def test_nested_without_narrow(run_task):
logging.basicConfig(format='%(asctime)s : %(levelname)s : %(message)s',
level=logging.DEBUG)
register_all()
run_task('s_9_logical_operators',
'nested_without_narrow',
'generic/expected/nested_without_narrow',
output_dir=WORKING_PATH)
def test_sequential(run_task):
logging.basicConfig(format='%(asctime)s : %(levelname)s : %(message)s',
level=logging.DEBUG)
register_all()
import examples.s_8_filter_narrow.conf.filters.threshold
run_task('s_8_filter_narrow',
'sequential',
'generic/expected',
output_dir=WORKING_PATH)
def test_illegal_usage(run_task):
logging.basicConfig(format='%(asctime)s : %(levelname)s : %(message)s',
level=logging.DEBUG)
register_all()
with pytest.raises(
ValueError,
match="LogicalOperator filter can be used in NestedFilter only"):
run_task('s_9_logical_operators',
'illegal_usage',
'generic/expected/illegal_usage',
output_dir=WORKING_PATH)
def setup_and_teardown():
shutil.rmtree(WORKING_PATH, ignore_errors=True)
register_all()
yield
shutil.rmtree(WORKING_PATH, ignore_errors=True)
from polytropos.ontology.schema import Schema
from polytropos.actions.consume.coverage import CoverageFile
from polytropos.ontology.context import Context
from polytropos.ontology.task import Task
from polytropos.ontology.variable import VariableId
from polytropos.tools.schema import treeview
from polytropos.tools.schema.catalog import variable_catalog
from polytropos.tools.schema.linkage import ExportLinkages
from polytropos.tools.schema.repair_sort import repair_sort_order
from polytropos.actions import register_all
logging.basicConfig(format='%(asctime)s : %(levelname)s : %(message)s',
level=logging.INFO)
register_all()
@click.group()
def cli() -> None:
"""Polytropos. Copyright (c) 2019 Applied Nonprofit Research."""
pass
@cli.command()
@click.argument('data_path', type=click.Path(exists=True))
@click.argument('config_path', type=click.Path(exists=True))
@click.argument('task_name', type=str)
@click.option('--input_path', type=click.Path(exists=True))
@click.option('--output_path', type=click.Path(exists=False))
@click.option('--temp_path', type=click.Path(exists=False))
def test_merge(run_task):
logging.basicConfig(format='%(asctime)s : %(levelname)s : %(message)s',
level=logging.DEBUG)
register_all()
run_task('s_10_merge', 'merge', 'expected', output_dir=WORKING_PATH)