else:
for elem in restricts[restrictType]:
otherElems.append(elem['name'] + " (" + elem['termid'] +
")")
networkDRdict['Cells'] = "\makecell[l]{" + "\\\\".join(
sorted(cellElems)) + "}"
networkDRdict['Disease'] = "\makecell[l]{" + "\\\\".join(
sorted(diseaseElems)) + "}"
networkDRdict['Other'] = "\makecell[l]{" + "\\\\".join(
sorted(otherElems)) + "}"
dr = DataRow.fromDict(networkDRdict)
restrictDF.addRow(dr)
print(restrictDF._makeLatex())
#exit()
allMissing = {}
figidx = 0
mirna2cellOut = open("/mnt/d/yanc_network/important_process.txt", 'w')
for network in networks:
figidx += 1
networkGraph = nx.Graph()
if network in ignoreNetworks:
continue
for pset in allPowerSets:
if len(pset) == 0:
continue
setPMIDs = set([x for x in allPMIDs])
for dim in pset:
setPMIDs = setPMIDs.intersection( dbs2pmids[dim] )
print(pset, len(setPMIDs))
drdict = {
"Subset": ", ".join(pset),
"Number of PMIDs": len(setPMIDs)
}
dr = DataRow.fromDict(drdict)
outdf.addRow(dr)
print(outdf._makeLatex())
else:
for elem in restricts[restrictType]:
otherElems.append(elem['name'] + " (" + elem['termid'] +
")")
networkDRdict['Cells'] = "\makecell[l]{" + "\\\\".join(
sorted(cellElems)) + "}"
networkDRdict['Disease'] = "\makecell[l]{" + "\\\\".join(
sorted(diseaseElems)) + "}"
networkDRdict['Other'] = "\makecell[l]{" + "\\\\".join(
sorted(otherElems)) + "}"
dr = DataRow.fromDict(networkDRdict)
restrictDF.addRow(dr)
print(restrictDF._makeLatex())
mirna2cellOut = open("/mnt/d/yanc_network/important_networks.txt", 'w')
def acceptEvidence(ev):
return True
figidx = 0
for network in networks:
figidx += 1
networkGraph = nx.Graph()
if network in ignoreNetworks: