def test_practioner(self):
p = self.add_practitioner()
p_ref = Reference.practitioner(p.id)
assert p_ref.as_fhir()['display'] == 'first last'
assert (p_ref.as_fhir()['reference']
== 'api/practitioner/12345?system={}'.format(US_NPI))
def test_practioner(self):
p = self.add_practitioner()
p_ref = Reference.practitioner(p.id)
assert p_ref.as_fhir()['display'] == 'first last'
assert (p_ref.as_fhir()['reference'] ==
'api/practitioner/12345?system={}'.format(US_NPI))
def test_demographicsPUT(self):
# race / ethnicity require the SLOW addition of concepts to db
self.add_concepts()
# clinic reference requires pre-existing organization
self.shallow_org_tree()
(org_id, org_name), (org2_id, org2_name) = [
(org.id, org.name) for org in Organization.query.filter(
Organization.id > 0).limit(2)]
pract = self.add_practitioner(first_name='Indiana', last_name='Jones')
pract_id = pract.id
family = 'User'
given = 'Test'
dob = '1999-01-31'
dod = '2027-12-31T09:10:00+00:00'
gender = 'Male'
phone = "867-5309"
alt_phone = "555-5555"
data = {"name": {"family": family, "given": given},
"resourceType": "Patient",
"birthDate": dob,
"deceasedDateTime": dod,
"gender": gender,
"telecom": [
{
"system": "phone",
"use": "mobile",
"value": phone,
}, {
"system": "phone",
"use": "home",
"value": alt_phone,
}, {
"system": 'email',
'value': '__no_email__'
}],
"extension": [{
"url":
"http://hl7.org/fhir/StructureDefinition/us-core-race",
"valueCodeableConcept": {
"coding": [{
"system": "http://hl7.org/fhir/v3/Race",
"code": "1096-7"}]}},
{"url":
"http://hl7.org/fhir/StructureDefinition/us-core-"
"ethnicity",
"valueCodeableConcept": {
"coding": [{
"system": "http://hl7.org/fhir/v3/Ethnicity",
"code": "2162-6"}]}}
],
"careProvider": [
{"reference": "Organization/{}".format(org_id)},
{"reference": "api/organization/{}".format(org2_id)},
{"reference": "Practitioner/{}".format(pract_id)},
]
}
self.login()
response = self.client.put(
'/api/demographics/%s' % TEST_USER_ID,
content_type='application/json',
data=json.dumps(data))
assert response.status_code == 200
fhir = response.json
for item in fhir['telecom']:
if item['system'] == 'phone':
if item['use'] == 'home':
assert alt_phone == item['value']
elif item['use'] == 'mobile':
assert phone == item['value']
else:
self.fail(
'unexpected telecom use: {}'.format(item['use']))
else:
self.fail(
'unexpected telecom system: {}'.format(item['system']))
assert fhir['birthDate'] == dob
assert fhir['deceasedDateTime'] == dod
assert fhir['gender'] == gender.lower()
assert fhir['name']['family'] == family
assert fhir['name']['given'] == given
# ignore added timezone and empty extensions
assert 2 == len([ext for ext in fhir['extension']
if 'valueCodeableConcept' in ext])
assert 3 == len(fhir['careProvider'])
assert (
Reference.practitioner(pract_id).as_fhir() in fhir['careProvider'])
user = db.session.merge(self.test_user)
assert user._email.startswith('__no_email__')
assert user.email is None
assert user.first_name == given
assert user.last_name == family
assert ['2162-6'] == [c.code for c in user.ethnicities]
assert ['1096-7'] == [c.code for c in user.races]
assert len(user.organizations) == 2
assert user.organizations[0].name == org_name
assert user.organizations[1].name == org2_name
assert user.practitioner_id == pract_id
def test_demographicsPUT(self):
# race / ethnicity require the SLOW addition of concepts to db
self.add_concepts()
# clinic reference requires pre-existing organization
self.shallow_org_tree()
(org_id, org_name), (org2_id, org2_name) = [
(org.id, org.name)
for org in Organization.query.filter(Organization.id > 0).limit(2)
]
pract = self.add_practitioner(first_name='Indiana', last_name='Jones')
pract_id = pract.id
family = 'User'
given = 'Test'
dob = '1999-01-31'
dod = '2027-12-31T09:10:00+00:00'
gender = 'Male'
phone = "867-5309"
alt_phone = "555-5555"
data = {
"name": {
"family": family,
"given": given
},
"resourceType":
"Patient",
"birthDate":
dob,
"deceasedDateTime":
dod,
"gender":
gender,
"telecom": [{
"system": "phone",
"use": "mobile",
"value": phone,
}, {
"system": "phone",
"use": "home",
"value": alt_phone,
}, {
"system": 'email',
'value': '__no_email__'
}],
"extension": [{
"url": "http://hl7.org/fhir/StructureDefinition/us-core-race",
"valueCodeableConcept": {
"coding": [{
"system": "http://hl7.org/fhir/v3/Race",
"code": "1096-7"
}]
}
}, {
"url":
"http://hl7.org/fhir/StructureDefinition/us-core-"
"ethnicity",
"valueCodeableConcept": {
"coding": [{
"system": "http://hl7.org/fhir/v3/Ethnicity",
"code": "2162-6"
}]
}
}],
"careProvider": [
{
"reference": "Organization/{}".format(org_id)
},
{
"reference": "api/organization/{}".format(org2_id)
},
{
"reference": "Practitioner/{}".format(pract_id)
},
]
}
self.login()
response = self.client.put('/api/demographics/%s' % TEST_USER_ID,
content_type='application/json',
data=json.dumps(data))
assert response.status_code == 200
fhir = response.json
for item in fhir['telecom']:
if item['system'] == 'phone':
if item['use'] == 'home':
assert alt_phone == item['value']
elif item['use'] == 'mobile':
assert phone == item['value']
else:
self.fail('unexpected telecom use: {}'.format(item['use']))
else:
self.fail('unexpected telecom system: {}'.format(
item['system']))
assert fhir['birthDate'] == dob
assert fhir['deceasedDateTime'] == dod
assert fhir['gender'] == gender.lower()
assert fhir['name']['family'] == family
assert fhir['name']['given'] == given
# ignore added timezone and empty extensions
assert 2 == len([
ext for ext in fhir['extension'] if 'valueCodeableConcept' in ext
])
assert 3 == len(fhir['careProvider'])
assert (Reference.practitioner(pract_id).as_fhir()
in fhir['careProvider'])
user = db.session.merge(self.test_user)
assert user._email.startswith('__no_email__')
assert user.email is None
assert user.first_name == given
assert user.last_name == family
assert ['2162-6'] == [c.code for c in user.ethnicities]
assert ['1096-7'] == [c.code for c in user.races]
assert len(user.organizations) == 2
assert user.organizations[0].name == org_name
assert user.organizations[1].name == org2_name
assert user.practitioner_id == pract_id