def __init__(self, oligomer, target):
self.oligomer = oligomer
self.target = target
thermo = calcEndStability(self.oligomer, self.target)
self.tm = thermo.tm
self.dg = thermo.dg
self.dh = thermo.dh
self.ds = thermo.ds
def test_calcEndStability(self):
for _ in range(100):
self.randArgs()
binding_res = bindings.calcEndStability(seq1=self.seq1,
seq2=self.seq2,
mv_conc=self.mv_conc,
dv_conc=self.dv_conc,
dntp_conc=self.dntp_conc,
dna_conc=self.dna_conc,
temp_c=self.temp_c,
max_loop=self.max_loop)
wrapper_res = wrappers.calcEndStability(seq1=self.seq1,
seq2=self.seq2,
mv_conc=self.mv_conc,
dv_conc=self.dv_conc,
dntp_conc=self.dntp_conc,
dna_conc=self.dna_conc,
temp_c=self.temp_c,
max_loop=self.max_loop)
self.assertEqual(int(binding_res.tm), int(wrapper_res.tm))
def test_calcEndStability(self):
for _ in range(25):
self.randArgs()
binding_res = bindings.calcEndStability(
seq1=self.seq1,
seq2=self.seq2,
mv_conc=self.mv_conc,
dv_conc=self.dv_conc,
dntp_conc=self.dntp_conc,
dna_conc=self.dna_conc,
temp_c=self.temp_c,
max_loop=self.max_loop)
wrapper_res = wrappers.calcEndStability(
seq1=self.seq1,
seq2=self.seq2,
mv_conc=self.mv_conc,
dv_conc=self.dv_conc,
dntp_conc=self.dntp_conc,
dna_conc=self.dna_conc,
temp_c=self.temp_c,
max_loop=self.max_loop)
self.assertEqual(int(binding_res.tm), int(wrapper_res.tm))