def test_partial_directory(self):
directory = path.join(path_to_module, "partial_dir")
res = progress.get_directory_status(directory, "SampleSheet.csv")
self.assertEqual(res.status, "partial")
self.assertIsNone(res.message)
def test_inaccessible_directory(self):
directory = path.join(path_to_module, "inaccessible_dir")
res = progress.get_directory_status(directory, "SampleSheet.csv")
self.assertEqual(res.status, "invalid")
self.assertIsNotNone(res.message)
def find_single_run(directory):
"""
Find a run in the base directory given
:param directory:
:return: DirectoryStatus object
"""
logging.info("looking for run in {}".format(directory))
return progress.get_directory_status(directory, 'SampleList.csv')
def find_runs(directory):
"""
find a list of run directories in the directory given
:param directory:
:return: list of DirectoryStatus objects
"""
logging.info("looking for runs in {}".format(directory))
runs = []
directory_list = Parser._find_directory_list(directory)
for d in directory_list:
runs.append(progress.get_directory_status(d, 'SampleList.csv'))
return runs