def bary_to_topo(infofilenm, ephem="DE200"):
"""
bary_to_topo(infofilenm, ephem="DE200"):
Returns the barycentric and topocentric times evert 10 seconds.
The data for the observation must be found in the info file.
"""
if infofilenm[-4:] == ".inf": infofilenm = infofilenm[:-4]
obs = read_inffile(infofilenm)
T = obs.N * obs.dt
dt = 10.0
tto = obs.mjd_i + obs.mjd_f
tts = Num.arange(tto, tto + (T + dt) / SECPERDAY, dt / SECPERDAY)
nn = len(tts)
bts = Num.zeros(nn, 'd')
vel = Num.zeros(nn, 'd')
ra = psr_utils.coord_to_string(obs.ra_h, obs.ra_m, obs.ra_s)
dec = psr_utils.coord_to_string(obs.dec_d, obs.dec_m, obs.dec_s)
if (obs.telescope == 'Parkes'): tel = 'PK'
elif (obs.telescope == 'Effelsberg'): tel = 'EB'
elif (obs.telescope == 'Arecibo'): tel = 'AO'
elif (obs.telescope == 'MMT'): tel = 'MT'
elif (obs.telescope == 'GBT'): tel = 'GB'
else:
print "Telescope not recognized."
return 0
barycenter(tts, bts, vel, nn, ra, dec, tel, ephem)
avgvel = Num.add.reduce(vel) / nn
tts = Num.arange(nn, dtype='d') * dt
bts = (bts - bts[0]) * SECPERDAY
return tts, bts
def bary_to_topo(infofilenm, ephem="DE200"):
"""
bary_to_topo(infofilenm, ephem="DE200"):
Returns the barycentric and topocentric times evert 10 seconds.
The data for the observation must be found in the info file.
"""
if infofilenm[-4:]==".inf": infofilenm = infofilenm[:-4]
obs = read_inffile(infofilenm)
T = obs.N * obs.dt
dt = 10.0
tto = obs.mjd_i + obs.mjd_f
tts = Num.arange(tto, tto + (T + dt) / SECPERDAY, dt / SECPERDAY)
nn = len(tts)
bts = Num.zeros(nn, 'd')
vel = Num.zeros(nn, 'd')
ra = psr_utils.coord_to_string(obs.ra_h, obs.ra_m, obs.ra_s)
dec = psr_utils.coord_to_string(obs.dec_d, obs.dec_m, obs.dec_s)
if (obs.telescope == 'Parkes'): tel = 'PK'
elif (obs.telescope == 'Effelsberg'): tel = 'EB'
elif (obs.telescope == 'Arecibo'): tel = 'AO'
elif (obs.telescope == 'MMT'): tel = 'MT'
elif (obs.telescope == 'GBT'): tel = 'GB'
else:
print "Telescope not recognized."
return 0
barycenter(tts, bts, vel, nn, ra, dec, tel, ephem)
avgvel = Num.add.reduce(vel) / nn
tts = Num.arange(nn, dtype='d') * dt
bts = (bts - bts[0]) * SECPERDAY
return tts, bts
def __init__(self, fil_filenm, box):
self.fil_filenm = fil_filenm
self.basefilenm = fil_filenm.rstrip(".sig")
#self.beam = int(self.basefilenm[-1])
self.beam = int(self.basefilenm)
filhdr, self.hdrlen = sigproc.read_header(fil_filenm)
self.orig_filenm = filhdr['rawdatafile']
self.MJD = filhdr['tstart']
self.nchans = filhdr['nchans']
self.ra_rad = sigproc.ra2radians(filhdr['src_raj'])
self.ra_string = psr_utils.coord_to_string(\
*psr_utils.rad_to_hms(self.ra_rad))
self.dec_rad = sigproc.dec2radians(filhdr['src_dej'])
self.dec_string = psr_utils.coord_to_string(\
*psr_utils.rad_to_dms(self.dec_rad))
self.az = filhdr['az_start']
self.el = 90.0-filhdr['za_start']
self.BW = abs(filhdr['foff']) * filhdr['nchans']
self.dt = filhdr['tsamp']
self.orig_N = sigproc.samples_per_file(fil_filenm, filhdr, self.hdrlen)
self.orig_T = self.orig_N * self.dt
self.N = choose_N(self.orig_N)
#self.N = 2097152
self.T = self.N * self.dt
# Update the RA and DEC from the database file if required
#newposn = read_db_posn(self.orig_filenm, self.beam)
#if newposn is not None:
# self.ra_string, self.dec_string = newposn
# ... and use them to update the filterbank file
# fix_fil_posn(fil_filenm, self.hdrlen,
# self.ra_string, self.dec_string)
# Determine the average barycentric velocity of the observation
#self.baryv = get_baryv(self.ra_string, self.dec_string,
# self.MJD, self.T, obs="NC")
# Where to dump all the results
# Directory structure is under the base_output_directory
# according to base/MJD/filenmbase/beam
self.outputdir = os.path.join(base_output_directory,box,
self.basefilenm)
# Figure out which host we are processing on
self.hostname = socket.gethostname()
# The fraction of the data recommended to be masked by rfifind
self.masked_fraction = 0.0
# Initialize our timers
self.rfifind_time = 0.0
self.downsample_time = 0.0
self.subbanding_time = 0.0
self.dedispersing_time = 0.0
self.FFT_time = 0.0
self.lo_accelsearch_time = 0.0
self.hi_accelsearch_time = 0.0
self.singlepulse_time = 0.0
self.sifting_time = 0.0
self.folding_time = 0.0
self.total_time = 0.0
# Inialize some candidate counters
self.num_sifted_cands = 0
self.num_folded_cands = 0
self.num_single_cands = 0
self.nb_sp = 0
def bary_to_topo(infofilenm, rawdatafile=False, ephem="DE200"):
"""
bary_to_topo(infofilenm, ephem="DE200"):
Returns the barycentric and topocentric times evert 10 seconds.
The data for the observation must be found in the info file.
"""
if infofilenm[-4:]==".inf":
infofilenm = infofilenm[:-4]
filetype = 'inf'
elif infofilenm[-5:]==".fits":
infofilenm = infofilenm
filetype = 'PSRFITS'
else:
raise ValueError("file type not recognized. Must be .inf, or .fits")
if filetype=="inf":
obs = read_inffile(infofilenm)
T = obs.N * obs.dt
dt = 10.0
tto = obs.mjd_i + obs.mjd_f
tts = Num.arange(tto, tto + (T + dt) / psr_utils.SECPERDAY, dt / psr_utils.SECPERDAY)
nn = len(tts)
bts = Num.zeros(nn, 'd')
vel = Num.zeros(nn, 'd')
ra = psr_utils.coord_to_string(obs.ra_h, obs.ra_m, obs.ra_s)
dec = psr_utils.coord_to_string(obs.dec_d, obs.dec_m, obs.dec_s)
if (obs.telescope == 'Parkes'): tel = 'PK'
elif (obs.telescope == 'Effelsberg'): tel = 'EB'
elif (obs.telescope == 'Arecibo'): tel = 'AO'
elif (obs.telescope == 'MMT'): tel = 'MT'
elif (obs.telescope == 'GBT'): tel = 'GB'
else:
print "Telescope not recognized."
return 0
elif filetype=="PSRFITS":
if not rawdatafile:
rawdatafile = psrfits.PsrfitsFile(infofilenm)
T = rawdatafile.specinfo.T
dt = 10.0
tto = rawdatafile.specinfo.start_MJD[0]
tts = Num.arange(tto, tto + (T + dt) / psr_utils.SECPERDAY, dt / psr_utils.SECPERDAY)
nn = len(tts)
bts = Num.zeros(nn, 'd')
vel = Num.zeros(nn, 'd')
ra = rawdatafile.specinfo.ra_str
dec = rawdatafile.specinfo.dec_str
if (rawdatafile.specinfo.telescope == 'Parkes'): tel = 'PK'
elif (rawdatafile.specinfo.telescope == 'Effelsberg'): tel = 'EB'
elif (rawdatafile.specinfo.telescope == 'Arecibo'): tel = 'AO'
elif (rawdatafile.specinfo.telescope == 'MMT'): tel = 'MT'
elif (rawdatafile.specinfo.telescope == 'GBT'): tel = 'GB'
else:
print "Telescope not recognized."
return 0
barycenter(tts, bts, vel, nn, ra, dec, tel, ephem)
avgvel = Num.add.reduce(vel) / nn
tts = Num.arange(nn, dtype='d') * dt
bts = (bts - bts[0]) * psr_utils.SECPERDAY
return tts, bts
def __init__(self, fil_filenm):
self.fil_filenm = fil_filenm
self.basefilenm = fil_filenm[:fil_filenm.find(".fil")]
filhdr, hdrlen = sigproc.read_header(fil_filenm)
self.MJD = filhdr['tstart']
self.nchans = filhdr['nchans']
self.ra_rad = sigproc.ra2radians(filhdr['src_raj'])
self.ra_string = pu.coord_to_string(*pu.rad_to_hms(self.ra_rad))
self.dec_rad = sigproc.dec2radians(filhdr['src_dej'])
self.dec_string = pu.coord_to_string(*pu.rad_to_dms(self.dec_rad))
self.str_coords = "J" + "".join(self.ra_string.split(":")[:2])
if self.dec_rad >= 0.0: self.str_coords += "+"
self.str_coords += "".join(self.dec_string.split(":")[:2])
self.az = filhdr['az_start']
self.el = 90.0 - filhdr['za_start']
fillen = os.stat(fil_filenm)[6]
self.raw_N = (fillen - hdrlen) / (filhdr['nbits'] /
8) / filhdr['nchans']
self.dt = filhdr['tsamp']
self.raw_T = self.raw_N * self.dt
self.N = orig_N
self.T = self.N * self.dt
# Determine the average barycentric velocity of the observation
self.baryv = get_baryv(self.ra_string,
self.dec_string,
self.MJD,
self.T,
obs="GB")
# Where to dump all the results
# Directory structure is under the base_output_directory
# according to base/MJD/filenmbase/beam
self.outputdir = os.path.join(base_output_dir, str(int(self.MJD)),
self.str_coords)
# Figure out which host we are processing on
self.hostname = socket.gethostname()
# The fraction of the data recommended to be masked by rfifind
self.masked_fraction = 0.0
# Initialize our timers
self.rfifind_time = 0.0
self.downsample_time = 0.0
self.dedispersing_time = 0.0
self.FFT_time = 0.0
self.lo_accelsearch_time = 0.0
self.hi_accelsearch_time = 0.0
self.singlepulse_time = 0.0
self.sifting_time = 0.0
self.folding_time = 0.0
self.total_time = 0.0
# Inialize some candidate counters
self.num_sifted_cands = 0
self.num_folded_cands = 0
self.num_single_cands = 0
def __init__(self, fil_filenm):
self.fil_filenm = fil_filenm
self.basefilenm = fil_filenm[:fil_filenm.find(".fil")]
filhdr, hdrlen = sigproc.read_header(fil_filenm)
self.MJD = filhdr['tstart']
self.nchans = filhdr['nchans']
self.ra_rad = sigproc.ra2radians(filhdr['src_raj'])
self.ra_string = pu.coord_to_string(*pu.rad_to_hms(self.ra_rad))
self.dec_rad = sigproc.dec2radians(filhdr['src_dej'])
self.dec_string = pu.coord_to_string(*pu.rad_to_dms(self.dec_rad))
self.str_coords = "J"+"".join(self.ra_string.split(":")[:2])
if self.dec_rad >= 0.0: self.str_coords += "+"
self.str_coords += "".join(self.dec_string.split(":")[:2])
self.az = filhdr['az_start']
self.el = 90.0-filhdr['za_start']
fillen = os.stat(fil_filenm)[6]
self.raw_N = (fillen-hdrlen)/(filhdr['nbits']/8)/filhdr['nchans']
self.dt = filhdr['tsamp']
self.raw_T = self.raw_N * self.dt
self.N = orig_N
self.T = self.N * self.dt
# Determine the average barycentric velocity of the observation
self.baryv = get_baryv(self.ra_string, self.dec_string,
self.MJD, self.T, obs="GB")
# Where to dump all the results
# Directory structure is under the base_output_directory
# according to base/MJD/filenmbase/beam
self.outputdir = os.path.join(base_output_dir,
str(int(self.MJD)),
self.str_coords)
# Figure out which host we are processing on
self.hostname = socket.gethostname()
# The fraction of the data recommended to be masked by rfifind
self.masked_fraction = 0.0
# Initialize our timers
self.rfifind_time = 0.0
self.downsample_time = 0.0
self.dedispersing_time = 0.0
self.FFT_time = 0.0
self.lo_accelsearch_time = 0.0
self.hi_accelsearch_time = 0.0
self.singlepulse_time = 0.0
self.sifting_time = 0.0
self.folding_time = 0.0
self.total_time = 0.0
# Inialize some candidate counters
self.num_sifted_cands = 0
self.num_folded_cands = 0
self.num_single_cands = 0
def bary_to_topo(pb, pbd, pbdd, infofilenm, ephem="DE200"):
"""
bary_to_topo(pb, pbd, pbdd, infofilenm, ephem="DE200"):
Use least squares to calculate topocentric period
period derivative, and period second derivative
for the corresponding barycentric values. The data
for the observation must be found in the info file.
"""
from numpy.linalg.old import linear_least_squares
if infofilenm[-4:] == ".inf": infofilenm = infofilenm[:-4]
obs = read_inffile(infofilenm)
T = obs.N * obs.dt
dt = 10.0
tto = obs.mjd_i + obs.mjd_f
tts = Num.arange(tto, tto + (T + dt) / SECPERDAY, dt / SECPERDAY)
nn = len(tts)
bts = Num.zeros(nn, 'd')
vel = Num.zeros(nn, 'd')
ra = psr_utils.coord_to_string(obs.ra_h, obs.ra_m, obs.ra_s)
dec = psr_utils.coord_to_string(obs.dec_d, obs.dec_m, obs.dec_s)
if (obs.telescope == 'Parkes'): tel = 'PK'
elif (obs.telescope == 'Effelsberg'): tel = 'EB'
elif (obs.telescope == 'Arecibo'): tel = 'AO'
elif (obs.telescope == 'MMT'): tel = 'MT'
else:
print "Telescope not recognized."
return 0
barycenter(tts, bts, vel, nn, ra, dec, tel, ephem)
print "Topocentric start time = %17.11f" % tts[0]
print "Barycentric start time = %17.11f" % bts[0]
avgvel = Num.add.reduce(vel) / nn
print "Average Earth velocity = %10.5e c" % (avgvel)
tts = Num.arange(nn, dtype='d') * dt
bts = (bts - bts[0]) * SECPERDAY
[fb, fbd, fbdd] = p_to_f(pb, pbd, pbdd)
b = fb * bts + fbd * bts**2.0 / 2.0 + fbdd * bts**3.0 / 6.0
a = Num.transpose(Num.asarray([tts, tts**2.0, tts**3.0]))
[ft, ftd, ftdd], residuals, rank, sv = linear_least_squares(a, b)
[pt, ptd, ptdd] = p_to_f(ft, ftd, ftdd)
print " Topocentric period = %15.12f" % pt
print " Topocentric p-dot = %15.9e" % ptd
print " Topocentric p-dotdot = %15.9e" % ptdd
print " Quick Topo period = %15.12f" % (pb * (1.0 + avgvel))
print " Quick Topo p-dot = %15.9e" % (pbd * (1.0 + avgvel))
print " Quick Topo p-dotdot = %15.9e" % (pbdd * (1.0 + avgvel))
return [pt, ptd, ptdd]
def bary_to_topo(pb, pbd, pbdd, infofilenm, ephem="DE200"):
"""
bary_to_topo(pb, pbd, pbdd, infofilenm, ephem="DE200"):
Use least squares to calculate topocentric period
period derivative, and period second derivative
for the corresponding barycentric values. The data
for the observation must be found in the info file.
"""
from numpy.linalg.old import linear_least_squares
if infofilenm[-4:]==".inf": infofilenm = infofilenm[:-4]
obs = read_inffile(infofilenm)
T = obs.N * obs.dt
dt = 10.0
tto = obs.mjd_i + obs.mjd_f
tts = np.arange(tto, tto + (T + dt) / SECPERDAY, dt / SECPERDAY)
nn = len(tts)
bts = np.zeros(nn, 'd')
vel = np.zeros(nn, 'd')
ra = psr_utils.coord_to_string(obs.ra_h, obs.ra_m, obs.ra_s)
dec = psr_utils.coord_to_string(obs.dec_d, obs.dec_m, obs.dec_s)
if (obs.telescope == 'Parkes'): tel = 'PK'
elif (obs.telescope == 'Effelsberg'): tel = 'EB'
elif (obs.telescope == 'Arecibo'): tel = 'AO'
elif (obs.telescope == 'MMT'): tel = 'MT'
else:
print "Telescope not recognized."
return 0
barycenter(tts, bts, vel, nn, ra, dec, tel, ephem)
print "Topocentric start time = %17.11f" % tts[0]
print "Barycentric start time = %17.11f" % bts[0]
avgvel = np.add.reduce(vel) / nn
print "Average Earth velocity = %10.5e c" % (avgvel)
tts = np.arange(nn, dtype='d') * dt
bts = (bts - bts[0]) * SECPERDAY
[fb, fbd, fbdd] = p_to_f(pb, pbd, pbdd)
b = fb * bts + fbd * bts**2.0 / 2.0 + fbdd * bts**3.0 / 6.0
a = np.transpose(np.asarray([tts, tts**2.0, tts**3.0]))
[ft, ftd, ftdd], residuals, rank, sv = linear_least_squares(a,b)
[pt, ptd, ptdd] = p_to_f(ft, ftd, ftdd)
print " Topocentric period = %15.12f" % pt
print " Topocentric p-dot = %15.9e" % ptd
print " Topocentric p-dotdot = %15.9e" % ptdd
print " Quick Topo period = %15.12f" % (pb * (1.0 + avgvel))
print " Quick Topo p-dot = %15.9e" % (pbd * (1.0 + avgvel))
print " Quick Topo p-dotdot = %15.9e" % (pbdd * (1.0 + avgvel))
return [pt, ptd, ptdd]
break
else:
accum_samples += samples_per_file[ii]
# Now make a command line option for spigot2filterbank
tmpfilenm = "tmp%d.fil"%random.randint(0,2**30)
cmd = "spigot2filterbank -skip %d -numout %d -o %s " % \
(skip, raw_N, tmpfilenm)
for goodfile in infilenms[ii:ii+numfiles]:
cmd += "%s "%goodfile
os.system(cmd)
# Now read the header to determine what the correct filename
# should be. Use that to rename the fil file.
filhdr, hdrlen = sigproc.read_header(tmpfilenm)
MJDi = int(filhdr['tstart'])
ra_rad = sigproc.ra2radians(filhdr['src_raj'])
ra_string = pu.coord_to_string(*pu.rad_to_hms(ra_rad))
dec_rad = sigproc.dec2radians(filhdr['src_dej'])
dec_string = pu.coord_to_string(*pu.rad_to_dms(dec_rad))
str_coords = "".join(ra_string.split(":")[:2])
if dec_rad >= 0.0: str_coords += "+"
str_coords += "".join(dec_string.split(":")[:2])
filfilenm = "GBT350drift_%d_%s.fil" % (MJDi, str_coords)
os.rename(tmpfilenm, filfilenm)
print("Renamed '%s' to '%s'." % (tmpfilenm, filfilenm))
def __str__(self):
out = ''
if (self.name):
out = out + "\nPulsar B%s (J%s)\n" % \
(self.name, self.jname)
else:
out = out + "\nPulsar J%s\n" % (self.jname)
if (self.alias):
out = out + " Alias = %s\n" % self.alias
if (self.assoc is not None):
out = out + " Association = %s\n" % self.assoc
if (self.type is not None):
out = out + " Type = %s\n" % self.type
(h, m, s) = psr_utils.rad_to_hms(self.ra)
serr = psr_utils.RADTOSEC * self.raerr
out = out + " RA (J2000) = %s +/- %.4fs\n" % \
(psr_utils.coord_to_string(h, m, s), serr)
(d, m, s) = psr_utils.rad_to_dms(self.dec)
serr = psr_utils.RADTOARCSEC * self.decerr
out = out + " DEC (J2000) = %s +/- %.4f\"\n" % \
(psr_utils.coord_to_string(d, m, s), serr)
out = out + " (l, b) = (%.2f, %.2f)\n" % \
(self.l, self.b)
out = out + " DM (cm-3 pc) = %.8g +/- %.5g\n" % \
(self.dm, self.dmerr)
if (self.s400 is not None):
out = out + " S_400MHz (mJy) = %.3g +/- %.2g\n" % \
(self.s400, self.s400err)
if (self.s1400 is not None):
out = out + " S_1400MHz (mJy) = %.3g +/- %.2g\n" % \
(self.s1400, self.s1400err)
if (self.dist is not None):
out = out + " Distance (kpc) = %.3g\n" % self.dist
out = out + " Period (s) = %.15g +/- %.15g\n" % \
(self.p, self.perr)
out = out + " P-dot (s/s) = %.8g +/- %.8g\n" % \
(self.pd, self.pderr)
out = out + " Epoch (MJD) = %.10g\n" % self.pepoch
if (self.binary):
out = out + " P_binary (s) = %.10g +/- %.10g\n" % \
(self.pb*86400.0, self.pberr*86400.0)
out = out + " P_binary (d) = %.10g +/- %.10g\n" % \
(self.pb, self.pberr)
if self.x is not None:
out = out + " a*sin(i)/c (s) = %.8g +/- %.8g\n" % \
(self.x, self.xerr)
if self.e is not None:
out = out + " Eccentricity = %.8g +/- %.8g\n" % \
(self.e, self.eerr)
if (self.e > 0.0):
if self.w is not None:
out = out + " Long of Peri (deg) = %.10g +/- %.10g\n" % \
(self.w, self.werr)
if self.To is not None:
out = out + " Time of Peri (MJD) = %.12g +/- %.12g\n" % \
(self.To, self.Toerr)
else:
if self.To is not None:
out = out + " T of Ascd Node (MJD) = %.12g +/- %.12g\n" % \
(self.To, self.Toerr)
return out
def __init__(self, parfilenm):
self.FILE = parfilenm
pf = open(parfilenm)
for line in pf.readlines():
# Skip comments
if line[0] == "#":
continue
# Convert any 'D-' or 'D+' to 'E-' or 'E+'
line = line.replace("D-", "E-")
line = line.replace("D+", "E+")
splitline = line.split()
# Skip blank lines
if len(splitline) == 0:
continue
key = splitline[0]
if key in str_keys:
setattr(self, key, splitline[1])
elif key in float_keys:
try:
setattr(self, key, float(splitline[1]))
except ValueError:
pass
if len(splitline) == 3: # Some parfiles don't have flags, but do have errors
if splitline[2] not in ["0", "1"]:
setattr(self, key + "_ERR", float(splitline[2]))
if len(splitline) == 4:
setattr(self, key + "_ERR", float(splitline[3]))
# Deal with Ecliptic coords
if hasattr(self, "BETA") and hasattr(self, "LAMBDA"):
setattr(self, "ELAT", self.BETA)
setattr(self, "ELONG", self.LAMBDA)
if slalib and hasattr(self, "ELAT") and hasattr(self, "ELONG"):
if hasattr(self, "POSEPOCH"):
epoch = self.POSEPOCH
else:
epoch = self.PEPOCH
ra_rad, dec_rad = sla_ecleq(self.ELONG * pu.DEGTORAD, self.ELAT * pu.DEGTORAD, epoch)
rstr = pu.coord_to_string(*pu.rad_to_hms(ra_rad))
dstr = pu.coord_to_string(*pu.rad_to_dms(dec_rad))
setattr(self, "RAJ", rstr)
setattr(self, "DECJ", dstr)
if hasattr(self, "RAJ"):
setattr(self, "RA_RAD", pu.ra_to_rad(self.RAJ))
if hasattr(self, "DECJ"):
setattr(self, "DEC_RAD", pu.dec_to_rad(self.DECJ))
# Compute the Galactic coords
if slalib and hasattr(self, "RA_RAD") and hasattr(self, "DEC_RAD"):
l, b = sla_eqgal(self.RA_RAD, self.DEC_RAD)
setattr(self, "GLONG", l * pu.RADTODEG)
setattr(self, "GLAT", b * pu.RADTODEG)
# Compute the Ecliptic coords
if slalib and hasattr(self, "RA_RAD") and hasattr(self, "DEC_RAD"):
if hasattr(self, "POSEPOCH"):
epoch = self.POSEPOCH
else:
epoch = self.PEPOCH
elon, elat = sla_eqecl(self.RA_RAD, self.DEC_RAD, epoch)
setattr(self, "ELONG", elon * pu.RADTODEG)
setattr(self, "ELAT", elat * pu.RADTODEG)
if hasattr(self, "P"):
setattr(self, "P0", self.P)
if hasattr(self, "P0"):
setattr(self, "F0", 1.0 / self.P0)
if hasattr(self, "F0"):
setattr(self, "P0", 1.0 / self.F0)
if hasattr(self, "FB0"):
setattr(self, "PB", (1.0 / self.FB0) / 86400.0)
if hasattr(self, "P0_ERR"):
if hasattr(self, "P1_ERR"):
f, ferr, fd, fderr = pu.pferrs(self.P0, self.P0_ERR, self.P1, self.P1_ERR)
setattr(self, "F0_ERR", ferr)
setattr(self, "F1", fd)
setattr(self, "F1_ERR", fderr)
else:
f, fd, = pu.p_to_f(self.P0, self.P1)
setattr(self, "F0_ERR", self.P0_ERR / (self.P0 * self.P0))
setattr(self, "F1", fd)
if hasattr(self, "F0_ERR"):
if hasattr(self, "F1_ERR"):
p, perr, pd, pderr = pu.pferrs(self.F0, self.F0_ERR, self.F1, self.F1_ERR)
setattr(self, "P0_ERR", perr)
setattr(self, "P1", pd)
setattr(self, "P1_ERR", pderr)
else:
p, pd, = pu.p_to_f(self.F0, self.F1)
setattr(self, "P0_ERR", self.F0_ERR / (self.F0 * self.F0))
setattr(self, "P1", pd)
if hasattr(self, "EPS1") and hasattr(self, "EPS2"):
ecc = math.sqrt(self.EPS1 * self.EPS1 + self.EPS2 * self.EPS2)
omega = math.atan2(self.EPS1, self.EPS2)
setattr(self, "E", ecc)
setattr(self, "OM", omega * pu.RADTODEG)
setattr(self, "T0", self.TASC + self.PB * omega / pu.TWOPI)
if hasattr(self, "PB") and hasattr(self, "A1") and not (hasattr(self, "E") or hasattr(self, "ECC")):
setattr(self, "E", 0.0)
if hasattr(self, "T0") and not hasattr(self, "TASC"):
setattr(self, "TASC", self.T0 - self.PB * self.OM / 360.0)
pf.close()
def read(self, parfilenm):
self.FILE = parfilenm
#print parfilenm
pf = open(parfilenm)
for line in pf.readlines():
# Convert any 'D-' or 'D+' to 'E-' or 'E+'
line = line.replace("D-", "E-")
line = line.replace("D+", "E+")
try:
splitline = line.split()
key = splitline[0]
if key in str_keys:
setattr(self, key, splitline[1])
elif key in float_keys:
try:
setattr(self, key, float(splitline[1]))
except ValueError:
pass
if len(
splitline
) == 3: # Some parfiles don't have flags, but do have errors
if splitline[2] not in ['0', '1']:
setattr(self, key + '_ERR', float(splitline[2]))
if len(splitline) == 4:
setattr(self, key + '_ERR', float(splitline[3]))
except:
if line.strip():
print ' ', line
# Read PSR name
if hasattr(self, 'PSR'):
setattr(self, 'PSR', self.PSR)
if hasattr(self, 'PSRJ'):
setattr(self, 'PSRJ', self.PSRJ)
# Deal with Ecliptic coords
if (hasattr(self, 'BETA') and hasattr(self, 'LAMBDA')):
self.use_eclip = True
setattr(self, 'ELAT', self.BETA)
setattr(self, 'ELONG', self.LAMBDA)
if (slalib and hasattr(self, 'ELAT') and hasattr(self, 'ELONG')):
self.use_eclip = True
if hasattr(self, 'POSEPOCH'):
epoch = self.POSEPOCH
else:
epoch = self.PEPOCH
ra_rad, dec_rad = sla_ecleq(self.ELONG * pu.DEGTORAD,
self.ELAT * pu.DEGTORAD, epoch)
rstr = pu.coord_to_string(*pu.rad_to_hms(ra_rad))
dstr = pu.coord_to_string(*pu.rad_to_dms(dec_rad))
setattr(self, 'RAJ', rstr)
setattr(self, 'DECJ', dstr)
if (slalib and hasattr(self, 'ELAT') and hasattr(self, 'ELONG')):
setattr(self, 'PMELONG', self.PMELONG)
setattr(self, 'PMELAT', self.PMELAT)
if hasattr(self, 'RAJ'):
setattr(self, 'RA_RAD', pu.ra_to_rad(self.RAJ))
if hasattr(self, 'DECJ'):
setattr(self, 'DEC_RAD', pu.dec_to_rad(self.DECJ))
# Compute the Galactic coords
if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
l, b = sla_eqgal(self.RA_RAD, self.DEC_RAD)
setattr(self, 'GLONG', l * pu.RADTODEG)
setattr(self, 'GLAT', b * pu.RADTODEG)
# Compute the Ecliptic coords
if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
if hasattr(self, 'POSEPOCH'):
epoch = self.POSEPOCH
else:
epoch = self.PEPOCH
elon, elat = sla_eqecl(self.RA_RAD, self.DEC_RAD, epoch)
setattr(self, 'ELONG', elon * pu.RADTODEG)
setattr(self, 'ELAT', elat * pu.RADTODEG)
if hasattr(self, 'P'):
setattr(self, 'P0', self.P)
if hasattr(self, 'P0'):
setattr(self, 'F0', 1.0 / self.P0)
if hasattr(self, 'F0'):
setattr(self, 'P0', 1.0 / self.F0)
if hasattr(self, 'F1'):
setattr(self, 'P1', -self.F1 / (self.F0 * self.F0))
if hasattr(self, 'FB0'):
setattr(self, 'PB', (1.0 / self.FB0) / 86400.0)
if hasattr(self, 'P0_ERR'):
if hasattr(self, 'P1_ERR'):
f, ferr, fd, fderr = pu.pferrs(self.P0, self.P0_ERR, self.P1,
self.P1_ERR)
setattr(self, 'F0_ERR', ferr)
setattr(self, 'F1', fd)
setattr(self, 'F1_ERR', fderr)
else:
f, fd, = pu.p_to_f(self.P0, self.P1)
setattr(self, 'F0_ERR', self.P0_ERR / (self.P0 * self.P0))
setattr(self, 'F1', fd)
if hasattr(self, 'F0_ERR'):
if hasattr(self, 'F1_ERR'):
p, perr, pd, pderr = pu.pferrs(self.F0, self.F0_ERR, self.F1,
self.F1_ERR)
setattr(self, 'P0_ERR', perr)
setattr(self, 'P1', pd)
setattr(self, 'P1_ERR', pderr)
else:
p, pd, = pu.p_to_f(self.F0, self.F1)
setattr(self, 'P0_ERR', self.F0_ERR / (self.F0 * self.F0))
setattr(self, 'P1', pd)
if hasattr(self, 'DM'):
setattr(self, 'DM', self.DM)
if hasattr(self, 'DM1'):
setattr(self, 'DM1', self.DM1)
if hasattr(self, 'DM2'):
setattr(self, 'DM2', self.DM2)
if hasattr(self, 'EPS1') and hasattr(self, 'EPS2'):
self.use_ell = True
ecc = math.sqrt(self.EPS1 * self.EPS1 + self.EPS2 * self.EPS2)
omega = math.atan2(self.EPS1, self.EPS2)
if self.EPS1 == 0.0 and self.EPS2 == 0.0:
ecc_err = pow(
pow(self.EPS1_ERR, 2) + pow(self.EPS2_ERR, 2), .5)
else:
ecc_err = pow(
pow(self.EPS1 * self.EPS1_ERR, 2) +
pow(self.EPS2 * self.EPS2_ERR, 2), 0.5) / ecc
setattr(self, 'ECC', ecc)
setattr(self, 'ECC_ERR', ecc_err)
setattr(self, 'OM', omega)
if hasattr(self, 'PB') and hasattr(self,
'A1') and not hasattr(self, 'ECC'):
setattr(self, 'ECC', 0.0)
if hasattr(self, 'BINARY'):
setattr(self, 'BINARY', self.BINARY)
if hasattr(self, 'KIN'):
setattr(self, 'SINI', math.sin(self.KIN * np.pi / 180.))
setattr(
self, 'SINI_ERR',
math.sin(self.KIN * np.pi / 180.) -
math.sin(self.KIN * np.pi / 180. -
self.KIN_ERR * np.pi / 180.))
pf.close()
def __init__(self, parfilenm):
self.FILE = parfilenm
pf = open(parfilenm)
for line in pf.readlines():
# Convert any 'D-' or 'D+' to 'E-' or 'E+'
line = line.replace("D-", "E-")
line = line.replace("D+", "E+")
splitline = line.split()
key = splitline[0]
if key in str_keys:
setattr(self, key, splitline[1])
elif key in float_keys:
try:
setattr(self, key, float(splitline[1]))
except ValueError:
pass
if len(splitline)==3: # Some parfiles don't have flags, but do have errors
if splitline[2] not in ['0', '1']:
setattr(self, key+'_ERR', float(splitline[2]))
if len(splitline)==4:
setattr(self, key+'_ERR', float(splitline[3]))
# Deal with Ecliptic coords
if (hasattr(self, 'BETA') and hasattr(self, 'LAMBDA')):
setattr(self, 'ELAT', self.BETA)
setattr(self, 'ELONG', self.LAMBDA)
if (slalib and hasattr(self, 'ELAT') and hasattr(self, 'ELONG')):
if hasattr(self, 'POSEPOCH'):
epoch = self.POSEPOCH
else:
epoch = self.PEPOCH
ra_rad, dec_rad = sla_ecleq(self.ELONG*pu.DEGTORAD,
self.ELAT*pu.DEGTORAD, epoch)
rstr = pu.coord_to_string(*pu.rad_to_hms(ra_rad))
dstr = pu.coord_to_string(*pu.rad_to_dms(dec_rad))
setattr(self, 'RAJ', rstr)
setattr(self, 'DECJ', dstr)
if hasattr(self, 'RAJ'):
setattr(self, 'RA_RAD', pu.ra_to_rad(self.RAJ))
if hasattr(self, 'DECJ'):
setattr(self, 'DEC_RAD', pu.dec_to_rad(self.DECJ))
# Compute the Galactic coords
if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
l, b = sla_eqgal(self.RA_RAD, self.DEC_RAD)
setattr(self, 'GLONG', l*pu.RADTODEG)
setattr(self, 'GLAT', b*pu.RADTODEG)
# Compute the Ecliptic coords
if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
if hasattr(self, 'POSEPOCH'):
epoch = self.POSEPOCH
else:
epoch = self.PEPOCH
elon, elat = sla_eqecl(self.RA_RAD, self.DEC_RAD, epoch)
setattr(self, 'ELONG', elon*pu.RADTODEG)
setattr(self, 'ELAT', elat*pu.RADTODEG)
if hasattr(self, 'P'):
setattr(self, 'P0', self.P)
if hasattr(self, 'P0'):
setattr(self, 'F0', 1.0/self.P0)
if hasattr(self, 'F0'):
setattr(self, 'P0', 1.0/self.F0)
if hasattr(self, 'FB0'):
setattr(self, 'PB', (1.0/self.FB0)/86400.0)
if hasattr(self, 'P0_ERR'):
if hasattr(self, 'P1_ERR'):
f, ferr, fd, fderr = pu.pferrs(self.P0, self.P0_ERR,
self.P1, self.P1_ERR)
setattr(self, 'F0_ERR', ferr)
setattr(self, 'F1', fd)
setattr(self, 'F1_ERR', fderr)
else:
f, fd, = pu.p_to_f(self.P0, self.P1)
setattr(self, 'F0_ERR', self.P0_ERR/(self.P0*self.P0))
setattr(self, 'F1', fd)
if hasattr(self, 'F0_ERR'):
if hasattr(self, 'F1_ERR'):
p, perr, pd, pderr = pu.pferrs(self.F0, self.F0_ERR,
self.F1, self.F1_ERR)
setattr(self, 'P0_ERR', perr)
setattr(self, 'P1', pd)
setattr(self, 'P1_ERR', pderr)
else:
p, pd, = pu.p_to_f(self.F0, self.F1)
setattr(self, 'P0_ERR', self.F0_ERR/(self.F0*self.F0))
setattr(self, 'P1', pd)
if hasattr(self, 'EPS1') and hasattr(self, 'EPS2'):
ecc = math.sqrt(self.EPS1 * self.EPS1 + self.EPS2 * self.EPS2)
omega = math.atan2(self.EPS1, self.EPS2)
setattr(self, 'E', ecc)
setattr(self, 'OM', omega * pu.RADTODEG)
setattr(self, 'T0', self.TASC + self.PB * omega/pu.TWOPI)
if hasattr(self, 'PB') and hasattr(self, 'A1') and not \
(hasattr(self, 'E') or hasattr(self, 'ECC')):
setattr(self, 'E', 0.0)
if hasattr(self, 'T0') and hasattr(self, 'PB') and hasattr(self, 'OM') and not hasattr(self, 'TASC'):
setattr(self, 'TASC', self.T0 - self.PB * self.OM/360.0)
pf.close()
print "skip = ", skip
print "1st_file_samps = ", first_file_samples
print "numfiles = ", numfiles
break
else:
accum_samples += samples_per_file[ii]
# Now make a command line option for spigot2filterbank
tmpfilenm = "tmp%d.fil" % random.randint(0, 2**30)
cmd = "spigot2filterbank -skip %d -numout %d -o %s " % \
(skip, raw_N, tmpfilenm)
for goodfile in infilenms[ii:ii + numfiles]:
cmd += "%s " % goodfile
os.system(cmd)
# Now read the header to determine what the correct filename
# should be. Use that to rename the fil file.
filhdr, hdrlen = sigproc.read_header(tmpfilenm)
MJDi = int(filhdr['tstart'])
ra_rad = sigproc.ra2radians(filhdr['src_raj'])
ra_string = pu.coord_to_string(*pu.rad_to_hms(ra_rad))
dec_rad = sigproc.dec2radians(filhdr['src_dej'])
dec_string = pu.coord_to_string(*pu.rad_to_dms(dec_rad))
str_coords = "".join(ra_string.split(":")[:2])
if dec_rad >= 0.0: str_coords += "+"
str_coords += "".join(dec_string.split(":")[:2])
filfilenm = "GBT350drift_%d_%s.fil" % (MJDi, str_coords)
os.rename(tmpfilenm, filfilenm)
print "Renamed '%s' to '%s'." % (tmpfilenm, filfilenm)
def __init__(self, parfilenm):
self.FILE = parfilenm
pf = open(parfilenm)
for line in pf.readlines():
# Skip comments
if line[0]=='#':
continue
# Convert any 'D-' or 'D+' to 'E-' or 'E+'
line = line.replace("D-", "E-")
line = line.replace("D+", "E+")
splitline = line.split()
# Skip blank lines
if len(splitline)==0:
continue
key = splitline[0]
# Regex checks for non-digit chars, followed by digit chars
m1 = re.search(r'(\D+)(\d+)$', key)
# This one looks for the DMX[RF][12]_* params
m2 = re.search(r'(\D+\d+_)(\d+)$', key)
if key == "JUMP":
if splitline[3] not in ['0', '1']:
setattr(self, key+'_%s'%splitline[2], float(splitline[3]))
if len(splitline)==5:
if splitline[4] not in ['0', '1']:
setattr(self, key+'_%s'%splitline[2]+'_ERR',
float(splitline[4]))
elif len(splitline)==6:
setattr(self, key+'_%s'%splitline[2]+'_ERR',
float(splitline[5]))
if key in str_keys:
setattr(self, key, splitline[1])
elif key in float_keys:
try:
setattr(self, key, float(splitline[1]))
except ValueError:
pass
elif m1 is not None:
m = m1
if m2 is not None:
m = m2
if m.group(1) in floatn_keys:
try:
setattr(self, key, float(splitline[1]))
except ValueError:
pass
if len(splitline)==3: # Some parfiles don't have flags, but do have errors
if splitline[2] not in ['0', '1']:
setattr(self, key+'_ERR', float(splitline[2]))
if len(splitline)==4:
setattr(self, key+'_ERR', float(splitline[3]))
# Deal with Ecliptic coords
if (hasattr(self, 'BETA') and hasattr(self, 'LAMBDA')):
setattr(self, 'ELAT', self.BETA)
setattr(self, 'ELONG', self.LAMBDA)
if (slalib and hasattr(self, 'ELAT') and hasattr(self, 'ELONG')):
if hasattr(self, 'POSEPOCH'):
epoch = self.POSEPOCH
else:
epoch = self.PEPOCH
ra_rad, dec_rad = sla_ecleq(self.ELONG*pu.DEGTORAD,
self.ELAT*pu.DEGTORAD, epoch)
rstr = pu.coord_to_string(*pu.rad_to_hms(ra_rad))
dstr = pu.coord_to_string(*pu.rad_to_dms(dec_rad))
setattr(self, 'RAJ', rstr)
setattr(self, 'DECJ', dstr)
if hasattr(self, 'RAJ'):
setattr(self, 'RA_RAD', pu.ra_to_rad(self.RAJ))
if hasattr(self, 'DECJ'):
setattr(self, 'DEC_RAD', pu.dec_to_rad(self.DECJ))
# Compute the Galactic coords
if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
l, b = sla_eqgal(self.RA_RAD, self.DEC_RAD)
setattr(self, 'GLONG', l*pu.RADTODEG)
setattr(self, 'GLAT', b*pu.RADTODEG)
# Compute the Ecliptic coords
if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
if hasattr(self, 'POSEPOCH'):
epoch = self.POSEPOCH
else:
epoch = self.PEPOCH
elon, elat = sla_eqecl(self.RA_RAD, self.DEC_RAD, epoch)
setattr(self, 'ELONG', elon*pu.RADTODEG)
setattr(self, 'ELAT', elat*pu.RADTODEG)
if hasattr(self, 'P'):
setattr(self, 'P0', self.P)
if hasattr(self, 'P0'):
setattr(self, 'F0', 1.0/self.P0)
if hasattr(self, 'F0'):
setattr(self, 'P0', 1.0/self.F0)
if hasattr(self, 'FB0'):
setattr(self, 'PB', (1.0/self.FB0)/86400.0)
if hasattr(self, 'P0_ERR'):
if hasattr(self, 'P1_ERR'):
f, ferr, fd, fderr = pu.pferrs(self.P0, self.P0_ERR,
self.P1, self.P1_ERR)
setattr(self, 'F0_ERR', ferr)
setattr(self, 'F1', fd)
setattr(self, 'F1_ERR', fderr)
else:
f, fd, = pu.p_to_f(self.P0, self.P1)
setattr(self, 'F0_ERR', self.P0_ERR/(self.P0*self.P0))
setattr(self, 'F1', fd)
else:
if hasattr(self, 'P1'):
f, fd, = pu.p_to_f(self.P0, self.P1)
setattr(self, 'F1', fd)
elif hasattr(self, 'F1'):
p, pd, = pu.p_to_f(self.F0, self.F1)
setattr(self, 'P1', pd)
if (hasattr(self, 'F0_ERR') and hasattr(self, 'F1_ERR')):
p, perr, pd, pderr = pu.pferrs(self.F0, self.F0_ERR,
self.F1, self.F1_ERR)
setattr(self, 'P0_ERR', perr)
setattr(self, 'P1', pd)
setattr(self, 'P1_ERR', pderr)
elif (hasattr(self, 'F0') and hasattr(self, 'F0_ERR')):
setattr(self, 'P0_ERR', self.F0_ERR/(self.F0*self.F0))
if hasattr(self, 'EPS1') and hasattr(self, 'EPS2'):
ecc = math.sqrt(self.EPS1 * self.EPS1 + self.EPS2 * self.EPS2)
omega = math.atan2(self.EPS1, self.EPS2)
setattr(self, 'E', ecc)
setattr(self, 'OM', omega * pu.RADTODEG)
setattr(self, 'T0', self.TASC + self.PB * omega/pu.TWOPI)
if hasattr(self, 'PB') and hasattr(self, 'A1') and not \
(hasattr(self, 'E') or hasattr(self, 'ECC')):
setattr(self, 'E', 0.0)
if hasattr(self, 'T0') and not hasattr(self, 'TASC'):
setattr(self, 'TASC', self.T0 - self.PB * self.OM/360.0)
pf.close()
def __init__(self, parfilenm):
self.FILE = parfilenm
pf = open(parfilenm)
for line in pf.readlines():
# Skip comments
if line[0] == '#':
continue
# Convert any 'D-' or 'D+' to 'E-' or 'E+'
line = line.replace("D-", "E-")
line = line.replace("D+", "E+")
splitline = line.split()
# Skip blank lines
if len(splitline) == 0:
continue
key = splitline[0]
# Regex checks for non-digit chars, followed by digit chars
m1 = re.search(r'(\D+)(\d+)$', key)
# This one looks for the DMX[RF][12]_* params
m2 = re.search(r'(\D+\d+_)(\d+)$', key)
if key == "JUMP":
if splitline[3] not in ['0', '1']:
setattr(self, key + '_%s' % splitline[2],
float(splitline[3]))
if len(splitline) == 5:
if splitline[4] not in ['0', '1']:
setattr(self, key + '_%s' % splitline[2] + '_ERR',
float(splitline[4]))
elif len(splitline) == 6:
setattr(self, key + '_%s' % splitline[2] + '_ERR',
float(splitline[5]))
if key in str_keys:
setattr(self, key, splitline[1])
elif key in float_keys:
try:
setattr(self, key, float(splitline[1]))
except ValueError:
pass
elif m1 is not None:
m = m1
if m2 is not None:
m = m2
if m.group(1) in floatn_keys:
try:
setattr(self, key, float(splitline[1]))
except ValueError:
pass
if len(
splitline
) == 3: # Some parfiles don't have flags, but do have errors
if splitline[2] not in ['0', '1']:
setattr(self, key + '_ERR', float(splitline[2]))
if len(splitline) == 4:
setattr(self, key + '_ERR', float(splitline[3]))
# Deal with Ecliptic coords
if (hasattr(self, 'BETA') and hasattr(self, 'LAMBDA')):
setattr(self, 'ELAT', self.BETA)
setattr(self, 'ELONG', self.LAMBDA)
if (slalib and hasattr(self, 'ELAT') and hasattr(self, 'ELONG')):
# TEMPO's ecliptic coords are always based on J2000 epoch
ra_rad, dec_rad = sla_ecleq(self.ELONG * pu.DEGTORAD,
self.ELAT * pu.DEGTORAD, J2000)
rstr = pu.coord_to_string(*pu.rad_to_hms(ra_rad))
dstr = pu.coord_to_string(*pu.rad_to_dms(dec_rad))
setattr(self, 'RAJ', rstr)
setattr(self, 'DECJ', dstr)
if hasattr(self, 'RAJ'):
setattr(self, 'RA_RAD', pu.ra_to_rad(self.RAJ))
if hasattr(self, 'DECJ'):
setattr(self, 'DEC_RAD', pu.dec_to_rad(self.DECJ))
# Compute the Galactic coords
if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
l, b = sla_eqgal(self.RA_RAD, self.DEC_RAD)
setattr(self, 'GLONG', l * pu.RADTODEG)
setattr(self, 'GLAT', b * pu.RADTODEG)
# Compute the Ecliptic coords
if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
# TEMPO's ecliptic coords are always based on J2000 epoch
elon, elat = sla_eqecl(self.RA_RAD, self.DEC_RAD, J2000)
setattr(self, 'ELONG', elon * pu.RADTODEG)
setattr(self, 'ELAT', elat * pu.RADTODEG)
if hasattr(self, 'P'):
setattr(self, 'P0', self.P)
if hasattr(self, 'P0'):
setattr(self, 'F0', 1.0 / self.P0)
if hasattr(self, 'F0'):
setattr(self, 'P0', 1.0 / self.F0)
if hasattr(self, 'FB0'):
setattr(self, 'PB', (1.0 / self.FB0) / 86400.0)
if hasattr(self, 'P0_ERR'):
if hasattr(self, 'P1_ERR'):
f, ferr, fd, fderr = pu.pferrs(self.P0, self.P0_ERR, self.P1,
self.P1_ERR)
setattr(self, 'F0_ERR', ferr)
setattr(self, 'F1', fd)
setattr(self, 'F1_ERR', fderr)
else:
f, fd, = pu.p_to_f(self.P0, self.P1)
setattr(self, 'F0_ERR', self.P0_ERR / (self.P0 * self.P0))
setattr(self, 'F1', fd)
else:
if hasattr(self, 'P1'):
f, fd, = pu.p_to_f(self.P0, self.P1)
setattr(self, 'F1', fd)
elif hasattr(self, 'F1'):
p, pd, = pu.p_to_f(self.F0, self.F1)
setattr(self, 'P1', pd)
if (hasattr(self, 'F0_ERR') and hasattr(self, 'F1_ERR')):
p, perr, pd, pderr = pu.pferrs(self.F0, self.F0_ERR, self.F1,
self.F1_ERR)
setattr(self, 'P0_ERR', perr)
setattr(self, 'P1', pd)
setattr(self, 'P1_ERR', pderr)
elif (hasattr(self, 'F0') and hasattr(self, 'F0_ERR')):
setattr(self, 'P0_ERR', self.F0_ERR / (self.F0 * self.F0))
if hasattr(self, 'EPS1') and hasattr(self, 'EPS2'):
ecc = math.sqrt(self.EPS1 * self.EPS1 + self.EPS2 * self.EPS2)
omega = math.atan2(self.EPS1, self.EPS2)
setattr(self, 'E', ecc)
setattr(self, 'OM', omega * pu.RADTODEG)
setattr(self, 'T0', self.TASC + self.PB * omega / pu.TWOPI)
if hasattr(self, 'PB') and hasattr(self, 'A1') and not \
(hasattr(self, 'E') or hasattr(self, 'ECC')):
setattr(self, 'E', 0.0)
if hasattr(self, 'T0') and not hasattr(self, 'TASC'):
setattr(self, 'TASC', self.T0 - self.PB * self.OM / 360.0)
if hasattr(self, 'E') and not hasattr(self, 'ECC'):
setattr(self, 'ECC', self.E)
if not hasattr(self, 'EPS1'):
setattr(self, 'ECC_ERR', self.E_ERR)
if hasattr(self, 'ECC') and not hasattr(self, 'E'):
setattr(self, 'E', self.ECC)
setattr(self, 'E_ERR', self.ECC_ERR)
pf.close()
def __init__(self, fil_filenm):
self.fil_filenm = fil_filenm
self.basefilenm = fil_filenm.rstrip(".fil")
self.beam = int(self.basefilenm[-1])
filhdr, self.hdrlen = sigproc.read_header(fil_filenm)
self.orig_filenm = filhdr['rawdatafile']
self.MJD = filhdr['tstart']
self.nchans = filhdr['nchans']
self.ra_rad = sigproc.ra2radians(filhdr['src_raj'])
self.ra_string = psr_utils.coord_to_string(\
*psr_utils.rad_to_hms(self.ra_rad))
self.dec_rad = sigproc.dec2radians(filhdr['src_dej'])
self.dec_string = psr_utils.coord_to_string(\
*psr_utils.rad_to_dms(self.dec_rad))
self.az = filhdr['az_start']
self.el = 90.0 - filhdr['za_start']
self.BW = abs(filhdr['foff']) * filhdr['nchans']
self.dt = filhdr['tsamp']
self.orig_N = sigproc.samples_per_file(fil_filenm, filhdr, self.hdrlen)
self.orig_T = self.orig_N * self.dt
self.N = psr_utils.choose_N(self.orig_N)
self.T = self.N * self.dt
# Update the RA and DEC from the database file if required
newposn = read_db_posn(self.orig_filenm, self.beam)
if newposn is not None:
self.ra_string, self.dec_string = newposn
# ... and use them to update the filterbank file
fix_fil_posn(fil_filenm, self.hdrlen, self.ra_string,
self.dec_string)
# Determine the average barycentric velocity of the observation
self.baryv = presto.get_baryv(self.ra_string,
self.dec_string,
self.MJD,
self.T,
obs="AO")
# Where to dump all the results
# Directory structure is under the base_output_directory
# according to base/MJD/filenmbase/beam
self.outputdir = os.path.join(base_output_directory,
str(int(self.MJD)), self.basefilenm[:-2],
str(self.beam))
# Figure out which host we are processing on
self.hostname = socket.gethostname()
# The fraction of the data recommended to be masked by rfifind
self.masked_fraction = 0.0
# Initialize our timers
self.rfifind_time = 0.0
self.downsample_time = 0.0
self.subbanding_time = 0.0
self.dedispersing_time = 0.0
self.FFT_time = 0.0
self.lo_accelsearch_time = 0.0
self.hi_accelsearch_time = 0.0
self.singlepulse_time = 0.0
self.sifting_time = 0.0
self.folding_time = 0.0
self.total_time = 0.0
# Inialize some candidate counters
self.num_sifted_cands = 0
self.num_folded_cands = 0
self.num_single_cands = 0
def __init__(self, parfilenm):
self.FILE = parfilenm
pf = open(parfilenm)
for line in pf.readlines():
# Skip comments
if line[0] == '#':
continue
# Convert any 'D-' or 'D+' to 'E-' or 'E+'
line = line.replace("D-", "E-")
line = line.replace("D+", "E+")
splitline = line.split()
# Skip blank lines
if len(splitline) == 0:
continue
key = splitline[0]
if key in str_keys:
setattr(self, key, splitline[1])
elif key in float_keys:
try:
setattr(self, key, float(splitline[1]))
except ValueError:
pass
if len(
splitline
) == 3: # Some parfiles don't have flags, but do have errors
if splitline[2] not in ['0', '1']:
setattr(self, key + '_ERR', float(splitline[2]))
if len(splitline) == 4:
setattr(self, key + '_ERR', float(splitline[3]))
# Deal with Ecliptic coords
if (hasattr(self, 'BETA') and hasattr(self, 'LAMBDA')):
setattr(self, 'ELAT', self.BETA)
setattr(self, 'ELONG', self.LAMBDA)
if (slalib and hasattr(self, 'ELAT') and hasattr(self, 'ELONG')):
if hasattr(self, 'POSEPOCH'):
epoch = self.POSEPOCH
else:
epoch = self.PEPOCH
ra_rad, dec_rad = sla_ecleq(self.ELONG * pu.DEGTORAD,
self.ELAT * pu.DEGTORAD, epoch)
rstr = pu.coord_to_string(*pu.rad_to_hms(ra_rad))
dstr = pu.coord_to_string(*pu.rad_to_dms(dec_rad))
setattr(self, 'RAJ', rstr)
setattr(self, 'DECJ', dstr)
if hasattr(self, 'RAJ'):
setattr(self, 'RA_RAD', pu.ra_to_rad(self.RAJ))
if hasattr(self, 'DECJ'):
setattr(self, 'DEC_RAD', pu.dec_to_rad(self.DECJ))
# Compute the Galactic coords
if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
l, b = sla_eqgal(self.RA_RAD, self.DEC_RAD)
setattr(self, 'GLONG', l * pu.RADTODEG)
setattr(self, 'GLAT', b * pu.RADTODEG)
# Compute the Ecliptic coords
if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
if hasattr(self, 'POSEPOCH'):
epoch = self.POSEPOCH
else:
epoch = self.PEPOCH
elon, elat = sla_eqecl(self.RA_RAD, self.DEC_RAD, epoch)
setattr(self, 'ELONG', elon * pu.RADTODEG)
setattr(self, 'ELAT', elat * pu.RADTODEG)
if hasattr(self, 'P'):
setattr(self, 'P0', self.P)
if hasattr(self, 'P0'):
setattr(self, 'F0', 1.0 / self.P0)
if hasattr(self, 'F0'):
setattr(self, 'P0', 1.0 / self.F0)
if hasattr(self, 'FB0'):
setattr(self, 'PB', (1.0 / self.FB0) / 86400.0)
if hasattr(self, 'P0_ERR'):
if hasattr(self, 'P1_ERR'):
f, ferr, fd, fderr = pu.pferrs(self.P0, self.P0_ERR, self.P1,
self.P1_ERR)
setattr(self, 'F0_ERR', ferr)
setattr(self, 'F1', fd)
setattr(self, 'F1_ERR', fderr)
else:
f, fd, = pu.p_to_f(self.P0, self.P1)
setattr(self, 'F0_ERR', self.P0_ERR / (self.P0 * self.P0))
setattr(self, 'F1', fd)
if (hasattr(self, 'F0_ERR') and hasattr(self, 'F1_ERR')):
p, perr, pd, pderr = pu.pferrs(self.F0, self.F0_ERR, self.F1,
self.F1_ERR)
setattr(self, 'P0_ERR', perr)
setattr(self, 'P1', pd)
setattr(self, 'P1_ERR', pderr)
elif (hasattr(self, 'F0') and hasattr(self, 'F0_ERR')):
setattr(self, 'P0_ERR', self.F0_ERR / (self.F0 * self.F0))
if hasattr(self, 'EPS1') and hasattr(self, 'EPS2'):
ecc = math.sqrt(self.EPS1 * self.EPS1 + self.EPS2 * self.EPS2)
omega = math.atan2(self.EPS1, self.EPS2)
setattr(self, 'E', ecc)
setattr(self, 'OM', omega * pu.RADTODEG)
setattr(self, 'T0', self.TASC + self.PB * omega / pu.TWOPI)
if hasattr(self, 'PB') and hasattr(self, 'A1') and not \
(hasattr(self, 'E') or hasattr(self, 'ECC')):
setattr(self, 'E', 0.0)
if hasattr(self, 'T0') and not hasattr(self, 'TASC'):
setattr(self, 'TASC', self.T0 - self.PB * self.OM / 360.0)
pf.close()
def __str__(self):
out = ''
if (self.name):
out = out + "\nPulsar B%s (J%s)\n" % \
(self.name, self.jname)
else:
out = out + "\nPulsar J%s\n" % (self.jname)
if (self.alias):
out = out + " Alias = %s\n" % self.alias
if (self.assoc is not None):
out = out + " Association = %s\n" % self.assoc
if (self.type is not None):
out = out + " Type = %s\n" % self.type
(h, m, s) = psr_utils.rad_to_hms(self.ra)
serr = psr_utils.RADTOSEC * self.raerr
out = out + " RA (J2000) = %s +/- %.4fs\n" % \
(psr_utils.coord_to_string(h, m, s), serr)
(d, m, s) = psr_utils.rad_to_dms(self.dec)
serr = psr_utils.RADTOARCSEC * self.decerr
out = out + " DEC (J2000) = %s +/- %.4f\"\n" % \
(psr_utils.coord_to_string(d, m, s), serr)
out = out + " (l, b) = (%.2f, %.2f)\n" % \
(self.l, self.b)
out = out + " DM (cm-3 pc) = %.8g +/- %.5g\n" % \
(self.dm, self.dmerr)
if (self.s400 is not None):
out = out + " S_400MHz (mJy) = %.3g +/- %.2g\n" % \
(self.s400, self.s400err)
if (self.s1400 is not None):
out = out + " S_1400MHz (mJy) = %.3g +/- %.2g\n" % \
(self.s1400, self.s1400err)
if (self.dist is not None):
out = out + " Distance (kpc) = %.3g\n" % self.dist
out = out + " Period (s) = %.15g +/- %.15g\n" % \
(self.p, self.perr)
out = out + " P-dot (s/s) = %.8g +/- %.8g\n" % \
(self.pd, self.pderr)
out = out + " Epoch (MJD) = %.10g\n" % self.pepoch
if (self.binary):
out = out + " P_binary (s) = %.10g +/- %.10g\n" % \
(self.pb*86400.0, self.pberr*86400.0)
out = out + " P_binary (d) = %.10g +/- %.10g\n" % \
(self.pb, self.pberr)
if self.x is not None:
out = out + " a*sin(i)/c (s) = %.8g +/- %.8g\n" % \
(self.x, self.xerr)
if self.e is not None:
out = out + " Eccentricity = %.8g +/- %.8g\n" % \
(self.e, self.eerr)
if (self.e > 0.0):
if self.w is not None:
out = out + " Long of Peri (deg) = %.10g +/- %.10g\n" % \
(self.w, self.werr)
if self.To is not None:
out = out + " Time of Peri (MJD) = %.12g +/- %.12g\n" % \
(self.To, self.Toerr)
else:
if self.To is not None:
out = out + " T of Ascd Node (MJD) = %.12g +/- %.12g\n" % \
(self.To, self.Toerr)
return out