Esempio n. 1
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    def run(self):
        events = self.get_passed_object('FR1_events')

        sel_events = events[(events.type == 'WORD') & (events.recalled == 1)]

        sel_events = sel_events[0:20]

        from ptsa.data.readers.TimeSeriesEEGReader import TimeSeriesEEGReader

        time_series_reader = TimeSeriesEEGReader(sel_events)

        time_series_reader.start_time = 0.0
        time_series_reader.end_time = 1.6
        time_series_reader.buffer_time = 1.0
        time_series_reader.keep_buffer = True

        time_series_reader.read(channels=['002', '003'])

        eegs = time_series_reader.get_output()

        print eegs
Esempio n. 2
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    def run(self):
        events = self.get_passed_object('FR1_events')

        sel_events = events[(events.type == 'WORD') & (events.recalled == 1)]

        sel_events = sel_events[0:20]


        from ptsa.data.readers.TimeSeriesEEGReader import TimeSeriesEEGReader

        time_series_reader = TimeSeriesEEGReader(sel_events)

        time_series_reader.start_time = 0.0
        time_series_reader.end_time = 1.6
        time_series_reader.buffer_time = 1.0
        time_series_reader.keep_buffer = True

        time_series_reader.read(channels=['002','003'])


        eegs = time_series_reader.get_output()

        print eegs
Esempio n. 3
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    def run(self):


        # PTSA EVENT  READER

        # e_path = join(self.pipeline.mount_point, 'data/events', self.pipeline.task,self.pipeline.subject+'_events.mat')
        e_path = '/Users/m/data/events/RAM_FR1/R1060M_events.mat'
        # e_path = '/Users/m/data/events/RAM_FR1/R1056M_events.mat'
        e_reader = PTSAEventReader(event_file=e_path, eliminate_events_with_no_eeg=True)

        e_reader.read()

        events = e_reader.get_output()

        events = events[events.type == 'WORD']

        events = events[0:30]

        ev_order = np.argsort(events, order=('session','list','mstime'))
        events = events[ev_order]



        events = Events(events) # necessary workaround for new numpy
        print 'events=',events

        eegs= events.get_data(channels=['002','003'], start_time=0.0, end_time=1.6,
                                        buffer_time=1.0, eoffset='eegoffset', keep_buffer=False, eoffset_in_time=False,verbose=True)

        print eegs

        # BASE READER


        base_e_reader = BaseEventReader(event_file=e_path, eliminate_events_with_no_eeg=True, use_ptsa_events_class=False)



        base_e_reader.read()

        base_events = base_e_reader.get_output()

        base_events = base_events[base_events.type == 'WORD']

        base_ev_order = np.argsort(base_events, order=('session','list','mstime'))
        base_events = base_events[base_ev_order]

        base_events = base_events[0:30]


        print 'base_events=',base_events


        from ptsa.data.readers.TimeSeriesEEGReader import TimeSeriesEEGReader

        time_series_reader = TimeSeriesEEGReader(base_events)

        time_series_reader.start_time = 0.0
        time_series_reader.end_time = 1.6
        time_series_reader.buffer_time = 1.0
        time_series_reader.keep_buffer = False

        time_series_reader.read(channels=['002','003'])


        base_eegs = time_series_reader.get_output()
        print
Esempio n. 4
0
    def run(self):

        # PTSA EVENT  READER

        # e_path = join(self.pipeline.mount_point, 'data/events', self.pipeline.task,self.pipeline.subject+'_events.mat')
        e_path = '/Users/m/data/events/RAM_FR1/R1060M_events.mat'
        # e_path = '/Users/m/data/events/RAM_FR1/R1056M_events.mat'
        e_reader = PTSAEventReader(event_file=e_path,
                                   eliminate_events_with_no_eeg=True)

        e_reader.read()

        events = e_reader.get_output()

        events = events[events.type == 'WORD']

        events = events[0:30]

        ev_order = np.argsort(events, order=('session', 'list', 'mstime'))
        events = events[ev_order]

        events = Events(events)  # necessary workaround for new numpy
        print 'events=', events

        eegs = events.get_data(channels=['002', '003'],
                               start_time=0.0,
                               end_time=1.6,
                               buffer_time=1.0,
                               eoffset='eegoffset',
                               keep_buffer=False,
                               eoffset_in_time=False,
                               verbose=True)

        print eegs

        # BASE READER

        base_e_reader = BaseEventReader(event_file=e_path,
                                        eliminate_events_with_no_eeg=True,
                                        use_ptsa_events_class=False)

        base_e_reader.read()

        base_events = base_e_reader.get_output()

        base_events = base_events[base_events.type == 'WORD']

        base_ev_order = np.argsort(base_events,
                                   order=('session', 'list', 'mstime'))
        base_events = base_events[base_ev_order]

        base_events = base_events[0:30]

        print 'base_events=', base_events

        from ptsa.data.readers.TimeSeriesEEGReader import TimeSeriesEEGReader

        time_series_reader = TimeSeriesEEGReader(base_events)

        time_series_reader.start_time = 0.0
        time_series_reader.end_time = 1.6
        time_series_reader.buffer_time = 1.0
        time_series_reader.keep_buffer = False

        time_series_reader.read(channels=['002', '003'])

        base_eegs = time_series_reader.get_output()
        print