def _createCoordinatesTiltPair(self, micTiltPairs, uCoords, tCoords,
angles, suffix):
coordTiltPairs = self.__createSet(
emobj.CoordinatesTiltPair,
'coordinates_pairs%s.sqlite',
suffix,
indexes=['_untilted._micId', '_tilted._micId'])
coordTiltPairs.setUntilted(uCoords)
coordTiltPairs.setTilted(tCoords)
coordTiltPairs.setAngles(angles)
coordTiltPairs.setMicsPair(micTiltPairs)
for coordU, coordT in izip(uCoords, tCoords):
coordTiltPairs.append(emobj.TiltPair(coordU, coordT))
return coordTiltPairs
def createTiltedPairsStep(self):
args = {}
self.micsPairsSqlite = self._getPath('micrographs_pairs.sqlite')
pwutils.cleanPath(self.micsPairsSqlite) # Delete if exists
micsTiltPair = emobj.MicrographsTiltPair(filename=self.micsPairsSqlite)
micsU = self.importMicrographs(self.patternUntilted.get(), 'Untilted',
self.voltage.get(),
self.sphericalAberration.get(),
self.ampContrast.get())
micsT = self.importMicrographs(self.patternTilted.get(), 'Tilted',
self.voltage.get(),
self.sphericalAberration.get(),
self.ampContrast.get())
micsTiltPair.setUntilted(micsU)
micsTiltPair.setTilted(micsT)
for micU, micT in zip(micsU, micsT):
micsTiltPair.append(emobj.TiltPair(micU, micT))
args[self.OUTPUT_NAME] = micsTiltPair
self._defineOutputs(**args)