def renderIndexSummary(form):
# default return values
reference = None
refSortedIndexRecords = None
marker = None
template = "gxdindex_summary"
# gather index records from the DB
indexRecords = form.queryIndexRecords()
# check for truncation by default limits
resultsTruncated = form.index_limit.data and \
(len(indexRecords) >= form.index_limit.data)
# generate age/assay count table
countSummary = gxdindex_aggregator.aggregateGenesByAssayAndStage(indexRecords)
# send to lit-index by reference, if passed a ref ID
if form.refs_id.data:
reference = reference_service.get_by_jnum_id(form.refs_id.data)
template = "gxdindex_summary_by_ref"
# send to lit-index by marker, if passed a marker ID
if form.marker_id.data:
# re-order indexRecords - this page has specific sort
indexRecords.sort(key=lambda r: r.reference.short_citation)
marker = marker_hunter.getMarkerByMGIID(form.marker_id.data)
template = "gxdindex_summary_by_marker"
# send to lit-index by age / assay, if passed age and assay_type
if form.age.data and form.assay_type.data:
template = "gxdindex_summary_by_age_assay"
return render_template("summary/gxdindex/%s.html" % template,
indexRecords=indexRecords,
resultsTruncated=resultsTruncated,
countSummary=countSummary,
reference=reference,
marker=marker,
form=form,
queryString=form.argString())
def renderIndexSummary(form):
# default return values
reference = None
refSortedIndexRecords = None
marker = None
template = "gxdindex_summary"
# gather index records from the DB
indexRecords = form.queryIndexRecords()
# check for truncation by default limits
resultsTruncated = form.index_limit.data and \
(len(indexRecords) >= form.index_limit.data)
# generate age/assay count table
countSummary = gxdindex_aggregator.aggregateGenesByAssayAndStage(indexRecords)
# send to lit-index by reference, if passed a ref ID
if form.refs_id.data:
reference = reference_service.get_by_jnum_id(form.refs_id.data)
template = "gxdindex_summary_by_ref"
# send to lit-index by marker, if passed a marker ID
if form.marker_id.data:
# re-order indexRecords - this page has specific sort
indexRecords.sort(key=lambda r: r.reference.short_citation)
marker = marker_hunter.getMarkerByMGIID(form.marker_id.data)
template = "gxdindex_summary_by_marker"
# send to lit-index by age / assay, if passed age and assay_type
if form.age.data and form.assay_type.data:
template = "gxdindex_summary_by_age_assay"
return render_template("summary/gxdindex/%s.html" % template,
indexRecords=indexRecords,
resultsTruncated=resultsTruncated,
countSummary=countSummary,
reference=reference,
marker=marker,
form=form,
queryString=form.argString())
def markerDetailById(id):
marker = marker_hunter.getMarkerByMGIID(id)
if marker:
return renderMarkerDetail(marker)
return error_template('No marker found for ID = %s' % id)
def markerDetailById(id):
marker = marker_hunter.getMarkerByMGIID(id)
if marker:
return renderMarkerDetail(marker)
return error_template('No marker found for ID = %s' % id)