def getDatasetInfo(dataset, debug=False):
client = pyAMI.client.Client('atlas')
AtlasAPI.init()
results = AtlasAPI.get_dataset_info(client, dataset)
if len(results) != 1:
raise SystemExit('\n***EXIT*** no valid results for dataset %s'%dataset)
eff = None
for name, value in results[0].iteritems():
if name=='totalEvents':
nevents = value
elif name=='crossSection':
xsec = float(value)*1e6 #xsec is in nb, hence the 1e6 factor to get it in fb
elif name=='datasetNumber':
dsid = value
elif name=='genFiltEff':
eff = float(value)
#if geFiltEff is not available, use aprox_GenFiltEff
if eff is None:
for name, value in results[0].iteritems():
if name=='approx_GenFiltEff':
eff = float(value)
print '%s %e %e %s'%(dsid, xsec, eff, nevents)
if debug:
for name, value in results[0].iteritems():
print ' %s %s'%((name+':').ljust(24),value)
print ''
return dsid, xsec, eff, nevents
def main(fileList, samples):
client = pyAMI.client.Client('atlas')
AtlasAPI.init()
dirDict=getDirNames(samples)
listInput=open(fileList)
inputDatasets=listInput.readlines()
listToCheck=[]
for ds in inputDatasets:
if "#" in ds:
continue
dsid=ds.split(".")[1]
ds=ds.strip("\n")
tmp=AtlasAPI.list_datasets(client, patterns = [ds], fields = ['events'])
try:
inputEvents=int(tmp[0]['events'])
except:
print "WARNING: skipping", ds
continue
try:
processedEvents=getNumberEvents(dirDict[dsid])
except KeyError:
print "WARNING: tihs sample may be missing:",dsid, ",not found in input samples", samples
processedEvents=0
if inputEvents==0:
print "inputEvents==0 for",ds
continue
frac=float(processedEvents)/float(inputEvents)
diff=inputEvents-processedEvents
if diff>0:
listToCheck += [dsid]
missing_sample_line = ' ----> Event numbers do NOT match (%s/%s). Please check your download for %s. Fraction of Events downloaded %0.4f. Difference in events: %s' %(processedEvents,inputEvents,dsid,frac,diff)
print missing_sample_line
print "\nThe following list of samples is incomplete/missing:", ' '.join(map(str, listToCheck))
print "============================================================================================================"
for sp in listToCheck:
for line in inputDatasets:
if re.search(sp, line):
print line,
print "============================================================================================================"
def getAmiClient():
global m_AMIClient
if m_AMIClient: return m_AMIClient
try:
import pyAMI.client
import pyAMI.atlas.api as AtlasAPI
except ImportError:
print 'No AMI setup is found please SETUP AMI using "localSetupPyAMI"'
sys.exit(1)
if os.getenv("RUCIO_ACCOUNT") is None:
print "No RUCIO ACCOUNT is available.. please define a rucio Account"
exit(1)
while CheckRemainingProxyTime() < 600:
print "VOMS-PROXY is running out, renewing..."
m_AMIClient = pyAMI.client.Client('atlas')
AtlasAPI.init()
return m_AMIClient
def main():
opts = parse_opts()
files = load_files(opts)
print "Initializing PyAMI"
ami_client = pyAMI.client.Client("atlas")
atlas_api.init()
print "Checking dataset %s with %d files" % (opts.dataset, len(files))
daod_events, cbk_events = get_local_events(files)
good = True
if not check_derivation_stats(ami_client, opts.dataset, daod_events):
good = False
if not check_sample_stats(ami_client, opts.dataset, cbk_events):
good = False
if not good:
sys.exit(1)
def getAmiClient():
global m_AMIClient
if m_AMIClient: return m_AMIClient
try:
import pyAMI.client
import pyAMI.atlas.api as AtlasAPI
except ImportError:
logging.error(
'No AMI setup is found please SETUP AMI using "localSetupPyAMI"')
sys.exit(1)
if not RUCIO_ACCOUNT:
logging.error(
"No RUCIO ACCOUNT is available.. please define a rucio Account")
exit(1)
while CheckRemainingProxyTime() < 600:
logging.info("VOMS-PROXY is running out, renewing...")
m_AMIClient = pyAMI.client.Client('atlas')
AtlasAPI.init()
return m_AMIClient
def main():
from argparse import RawTextHelpFormatter
parser = argparse.ArgumentParser(description=__doc__,
formatter_class=RawTextHelpFormatter)
parser.add_argument(
'--inDsTxt',
action="store",
help=
"text file containing datasets to make PRW for (one per line) [REQUIRED]",
required=True)
parser.add_argument('--outDS',
action="store",
default="",
help="Name of the output dataset",
required=False)
parser.add_argument(
'--forceStaged',
action="store_true",
help="If set, grid jobs will be submitted with forceStaged option")
parser.add_argument(
'--skipNTUP_PILEUP',
action="store_true",
help="If set, will not check for existing NTUP_PILEUP datasets")
parser.add_argument('prwFiles',
nargs="*",
help="Exosting PRW Config files to check")
args = parser.parse_args()
try:
import pyAMI.atlas.api as atlasAPI
import pyAMI.client
except ImportError:
print "Could not import pyAMI ... please do: lsetup pyAMI"
print "Also ensure you have a valid certificate (voms-proxy-init -voms atlas)"
return 1
client = pyAMI.client.Client('atlas')
atlasAPI.init()
#read datasets into list
with open(args.inDsTxt) as f:
datasets = f.read().splitlines()
import ROOT
out = ROOT.CP.TPileupReweighting("out")
for f in args.prwFiles:
out.AddConfigFile(f)
out.ResetCountingMode() #trick tool into going into counting mode
#list of known period numbers
periodNumbers = out.GetPeriodNumbers()
print "Determining provenances of %d datasets ..." % len(datasets)
aodDatasets = []
ntupDatasets = []
for dataset in datasets:
dataset = dataset.strip("/")
#strip the scope if it's there
if dataset.startswith("#"): continue
dataset = dataset.rsplit(":")[-1].strip()
if len(dataset) == 0: continue
print "Doing %s" % dataset
prov = atlasAPI.get_dataset_prov(client, dataset)
if 'node' not in prov:
print "ERROR: Could not determine provenance of %s, skipping!" % dataset
continue
theParent = ""
for ds in prov['node']:
if ds[u'dataType'] != u'AOD': continue
theParent = str(ds[u'logicalDatasetName'])
theParentSize = int(ds[u'events'])
break
if theParent == "":
print "ERROR: Could not determine provenance of %s, skipping!" % dataset
continue
#check input prw files, if we specified
isIncomplete = False
if len(args.prwFiles):
total = 0
dsid = theParent.split(".")[1]
for p in periodNumbers:
if p == -1: continue
hist = out.GetInputHistogram(int(dsid), p)
if hist: total += hist.GetEntries()
if total == theParentSize:
print "INFO: %s is complete in your existing PRW files. Good!" % dataset
continue
if total > theParentSize:
print "WARNING: %s is suspect in your existing PRW files, has %d events when expected %d ... please check you didn't overmerge" % (
dataset, total, theParentSize)
continue
else:
if total != 0:
print "WARNING: %s is incomplete (%d events when expected %d) ... will try to find centrally produced NTUP_PILEUP or prepare to generate" % (
dataset, total, theParentSize)
isIncomplete = True
#before adding the dataset, see if we can find an NTUP_PILEUP for it
if not args.skipNTUP_PILEUP:
ntupDatasetName = theParent.replace("AOD", "NTUP_PILEUP")
ntupDatasetName = ntupDatasetName.replace("aod", "%")
ntupDatasetName = ntupDatasetName.replace("merge", "%")
#remove everything after first rtag of ami tag .. replace with wildcard
first_rtag_pos = ntupDatasetName.index(
"_r", ntupDatasetName.index("NTUP_PILEUP"))
try:
next_underscore_pos = ntupDatasetName.index(
"_", first_rtag_pos + 1)
except ValueError:
next_underscore_pos = len(ntupDatasetName)
ntupDatasetName = ntupDatasetName[:next_underscore_pos] + "%"
res = atlasAPI.list_datasets(client,
ntupDatasetName,
fields='ldn,prodsys_status')
foundNTUP = False
for r in res:
if r[u'prodsys_status'] != "ALL EVENTS AVAILABLE" and (
isIncomplete or
r[u'prodsys_status'] != "EVENTS PARTIALLY AVAILABLE"):
continue
print "Found existing NTUP_PILEUP ... please download: %s" % r[
u"ldn"]
ntupDatasets += [r[u'ldn']]
foundNTUP = True
break
if foundNTUP == True: continue
aodDatasets += [theParent]
if len(aodDatasets) > 0:
if args.outDS == "":
print "NTUP_PILEUP need generating for the following datasets, please specify the --outDS option to give a name to the output dataset"
print ",".join(aodDatasets)
return 1
print "...submitting job to grid..."
extraOpts = ""
if args.forceStaged: extraOpts += "--forceStaged "
mycommand = """pathena --inDS="%s" --outDS="%s" PileupReweighting/generatePRW_jobOptions.py %s--mergeOutput --nGBPerJob=MAX --addNthFieldOfInDSToLFN=2,6""" % (
",".join(aodDatasets), args.outDS, extraOpts)
print "Command: %s" % mycommand
from subprocess import call
if call(mycommand, shell=True) != 0:
print "Problem executing command. Did you remember to do: lsetup panda"
return 1
print "... finished. Please monitor your job on the grid, and when it is finished, download the files!"
if len(ntupDatasets):
frucio_fn = 'rucio_downloads_%s.sh' % args.inDsTxt
print "Please download existing config files from these datasets (see also output file %s):" % frucio_fn
with open(frucio_fn, 'w') as frucio:
for ds in ntupDatasets:
command = "rucio download %s" % ds
print command
frucio.write(command + '\n')
print ""
if len(ntupDatasets) or len(aodDatasets):
print "After downloading, you are advised to check they are complete: checkPRW.py --inDsTxt=%s <downloaded files> " % args.inDsTxt
print "Thank you for generating config files, you get a gold star!"
else:
print "Looks like you are ready for pileup reweighting!"
return 0
#!/usr/bin/env python
import ROOT
import os
import pyAMI.client
import pyAMI.atlas.api as AtlasAPI
# Check if it's likely that we have a buggy number of AOD events
# To start, just checking AMI for the full original number, then seeing if it's higher.
# Set up pyAMI
client = pyAMI.client.Client('atlas')
AtlasAPI.init()
# Dir for MC files
mc_dir = "/afs/cern.ch/work/t/tholmes/ZMETSamples/eos/atlas/user/l/longjon/Ntuples/v00-13/"
#mc_dir = "/afs/cern.ch/work/t/tholmes/ZMETSamples/eos/atlas/user/t/tholmes/Ntuples/v00-11/"
# expect to have the form user.zmarshal.361443.e4133_s2608_s2183_r6869_r6282_p2419.zmetjets-v00-11_Sep2815_ntupleOutput.root
# with files in that dir
bad_dids = []
for d in os.listdir(mc_dir):
if not d.endswith(".root"): continue
if not "_p2411" in d: continue
#if not "zmarshal.361" in d: continue
print d
# Get total number of events
n_aod_events = 0
for f in os.listdir(mc_dir + d):
tf = ROOT.TFile(mc_dir + d + '/' + f, 'READ')
o, a = parser.parse_args()
try:
import pyAMI.client
except:
print "Failed to load pyAMI.client, you need to set up local PyAMI"
print "do"
print " > localSetupPyAMI"
import sys
sys.exit(-1)
import pyAMI.atlas.api as AtlasAPI
client = pyAMI.client.Client('atlas')
AtlasAPI.init()
inputDS = []
eventCounts = {}
inputFile = open(o.inFileName,"r")
for line in inputFile:
if line.startswith("#"): continue
words = line.split()
if not len(words): continue
dsName = words[0].rstrip("/")
dsID = dsName.split(".")[1]
print dsName
try:
# set verbosity for python printing
if args.verbose < 4:
getWeights_logger.setLevel(20 - args.verbose*5)
else:
getWeights_logger.setLevel(logging.NOTSET + 1)
try:
# get PyAMI
import pyAMI.client
import pyAMI.atlas.api as api
except ImportError:
getWeights_logger.exception("You must set up PyAMI first. lsetup pyami will do the trick. Make sure you have a valid certificate (voms-proxy-init -voms atlas) or run `ami auth` to log in.")
sys.exit(0)
# INIT ATLAS API
api.init()
# INSTANTIATE THE PYAMI CLIENT FOR ATLAS
client = pyAMI.client.Client('atlas')
try:
import timing
# check submission directory
if args.force_overwrite:
getWeights_logger.info("removing {0:s}".format(args.output_filename))
try:
os.remove(args.output_filename)
except OSError:
pass
else:
def main():
from argparse import RawTextHelpFormatter
parser = argparse.ArgumentParser(description=__doc__,formatter_class=RawTextHelpFormatter)
parser.add_argument('--outPRWFile',action="store",help="OPTIONAL Name of the output prw file containing valid configs",required=False)
parser.add_argument('--outputSuspect',action="store_true",help="allow for suspect channels to be included in the output prw file",default=False)
parser.add_argument('--inDsTxt',action="store",help="text file containing datasets to make PRW for (one per line)",required=True)
parser.add_argument('prwFiles',nargs="+",help="PRW Config files to scan")
args = parser.parse_args()
try:
import pyAMI.atlas.api as atlasAPI
import pyAMI.client
except ImportError:
print "Could not import pyAMI ... please do: lsetup pyAMI"
print "Also ensure you have a valid certificate (voms-proxy-init -voms atlas)"
return 1
client = pyAMI.client.Client('atlas')
atlasAPI.init()
#read datasets into list
datasets=[]
for txtFile in args.inDsTxt.split(","):
with open(txtFile) as f: datasets += f.read().splitlines()
print "Determining provenances of %d datasets ..." % len(datasets)
aodDatasets=dict()
for dataset in datasets:
#strip the scope if it's there
if dataset.startswith("#"): continue
dataset = dataset.rsplit(":")[-1].strip()
if len(dataset)==0: continue
print "Doing %s" % dataset
prov = atlasAPI.get_dataset_prov(client, dataset )
if 'node' not in prov:
print "ERROR: Could not determine provenance of %s, skipping!" % dataset
continue
theParent=""
for ds in prov['node']:
if ds[u'dataType']!=u'AOD': continue
theParent = str(ds[u'logicalDatasetName'])
theParentSize = int(ds[u'events'])
break
if theParent=="":
print "ERROR: Could not determine provenance of %s, skipping!" % dataset
continue
#extract the dsid ...
theParent = theParent.split(".")[1]
if theParent in aodDatasets: aodDatasets[theParent] += theParentSize
else: aodDatasets[theParent] = theParentSize
#aodDatasets is now a chanNum -> eventNumber pairing ...
import ROOT
out = ROOT.CP.TPileupReweighting("out")
for f in args.prwFiles:
out.AddConfigFile(f)
out.ResetCountingMode() #trick tool into going into counting mode
#list of known period numbers
periodNumbers = out.GetPeriodNumbers()
for dsid,nevents in aodDatasets.iteritems():
#get the sum of weights from the tool
total=0;
for p in periodNumbers:
if p==-1: continue
hist = out.GetInputHistogram(int(dsid),p)
if hist: total += hist.GetEntries()
if total==nevents:
print "channel %s is ok" % dsid
elif total<nevents:
print "channel %s is incomplete (missing %d events from config files)" % (dsid,nevents-total)
out.RemoveChannel(int(dsid))
elif total>nevents:
print "channel %s is suspect! (config files have additional %d events)" % (dsid,total-nevents)
if not args.outputSuspect:
out.RemoveChannel(int(dsid))
if args.outPRWFile:
out.Initialize();
out.WriteToFile(args.outPRWFile);
return 0
def __init__(s):
s.client = pyAMI.client.Client("atlas")
AtlasAPI.init()
def main():
logging.basicConfig(format='%(levelname)s:%(message)s')
import time, datetime
from pytz import timezone
import argparse
try:
import pyAMI.client
import pyAMI.atlas.api as AtlasAPI
import pyAMI.config
except ImportError:
logging.error(
"Unable to find pyAMI client. Please try this command first: lsetup pyAMI"
)
return -1
extraFieldDefaults = {
} #{"approx_crossSection":None,"approx_GenFiltEff":1.0}
fieldDefaults = {"subprocessID": 0, "dataset_number": 0}
#populate the fieldDefaults ... for all, assume 'None'
for field in pyAMI.config.tables['datasets'].keys():
if str(field) == "cross_section":
continue #special exception because this field only present in
if str(field) in fieldDefaults.keys(): continue
if str(field).startswith("@"): continue
fieldDefaults[str(field)] = None
import commands
#check the voms proxy
status, out = commands.getstatusoutput("voms-proxy-info -fqan -exists")
if status != 0:
logging.error(
"Please renew your certificate with this command: voms-proxy-init -voms atlas"
)
return -1
try:
client = pyAMI.client.Client('atlas')
AtlasAPI.init()
except:
logging.error(
"Could not establish pyAMI session. Are you sure you have a valid certificate? Do: voms-proxy-init -voms atlas"
)
return -1
#need to collect the ami dataset parameter defaults
paramExplains = [] #for the help message only
paramUnits = dict()
paramDefaults = {}
res = client.execute('ListPhysicsParameterDefs', format='dom_object')
for r in res.get_rows(): #r is OrderedDict
explainString = "%s: %s" % (r[u'PARAMNAME'], r[u'DESCRIPTION'])
if r[u'UNITS'] != u'NULL':
explainString += " (units: %s)" % r[u'UNITS']
paramUnits[r[u'PARAMNAME']] = r[u'UNITS']
if r[u'HASDEFAULT'] == u'N': paramDefaults[str(r[u'PARAMNAME'])] = None
else:
explainString += " (default value = %s)" % r[u'DEFAULTVALUE']
if r[u'PARAMTYPE'] == u'number':
paramDefaults[str(r[u'PARAMNAME'])] = float(
r[u'DEFAULTVALUE']
) #FIXME: Assumes all parameters are floats
elif r[u'PARAMTYPE'] == u'string':
paramDefaults[str(r[u'PARAMNAME'])] = str(r[u'DEFAULTVALUE'])
paramExplains += [explainString]
paramDefaults["crossSection_pb"] = None
paramUnits["crossSection_pb"] = "pb"
paramExplains += [
"crossSection_pb: Same as crossSection except in pb units (units: pb)"
]
cern_time = timezone('UCT')
current_time = datetime.datetime.fromtimestamp(
time.time(), cern_time).strftime('%Y-%m-%d %H:%M:%S')
from argparse import RawTextHelpFormatter
parser = argparse.ArgumentParser(description=__doc__,
formatter_class=RawTextHelpFormatter)
parser.add_argument('--inDS',
nargs='+',
default=[""],
help="List of datasets to retrieve parameters for")
parser.add_argument(
'--inDsTxt',
default="",
help=
"Alternative to --inDS, can specify the datasets from an input file")
parser.add_argument(
'--fields',
nargs='+',
help=
"List of parameters to extract. Available parameters are: \n\n %s\n\nYou can also include any from:\n %s\nYou can also do keyword_xxx to add a bool branch for keywords"
% ("\n ".join(paramExplains),
", ".join(fieldDefaults.keys() + extraFieldDefaults.keys())),
default=["dataset_number", "crossSection", "kFactor", "genFiltEff"])
parser.add_argument(
'--timestamp',
default=current_time,
help=
"The timestamp to query parameters at, specified in Universal Central Time (UCT). If left blank, will take the current time"
)
parser.add_argument(
'--physicsGroups',
nargs='+',
default=["PMG,MCGN"],
help=
"Physics group from which to retrieve parameters, listed in order of priority (highest first). Default value is 'PMG,MCGN' (i.e. try to use PMG values, fallback on MCGN values if unavailable). Allowed groups are:\n PMG (this is the PMG's group name), BPHY, COSM, DAPR, EGAM, EXOT, FTAG, HIGG, HION, IDET, IDTR, JETM, LARG, MCGN (this is the AMI default group name), MDET, MUON, PHYS, REPR, SIMU, STDM, SUSY, TAUP, TCAL, TDAQ, THLT, TOPQ, TRIG, UPGR, VALI"
)
parser.add_argument(
'--oldTimestamp',
default="",
help=
"If specified, will instead display a diff between the old and new timestamp, showing explanation of any changed parameters"
)
parser.add_argument(
'--explainFields',
nargs='+',
default=[],
help=
"The fields you would like explained .. will appear as comment lines after each row in the output"
)
parser.add_argument(
'--explainInfo',
nargs='+',
default=['explanation', 'insert_time'],
help=
"Properties of the parameter you want to show in the explanation. Can list from: explanation, insert_time, physicsGroup, createdby. Default is: explanation,insert_time"
)
parser.add_argument(
'--outFile',
default=sys.stdout,
type=argparse.FileType('w'),
help="Where to print the output to. Leave blank to print to stdout")
parser.add_argument(
'--delim',
default="",
help=
"The delimiter character. Defaults to spaces leading to nice formatting table"
)
parser.add_argument('-v',
action='store_true',
help="Verbose output for debugging")
args = parser.parse_args()
if args.v: logging.getLogger().setLevel(logging.DEBUG)
else: logging.getLogger().setLevel(logging.INFO)
logging.debug(args.inDS)
logging.debug(args.fields)
logging.debug(args.timestamp)
if args.timestamp == "the dawn of time":
logging.error(
"Unfortunately we don't know any parameters from this time period... but we're working on it!"
)
return 9999
#split elements of fields by comma to get full list
args.fields = sum((y.split(',') for y in args.fields), [])
args.fields = [x.strip() for x in args.fields] #strips whitespace
#look for keyword_ fields, these are special ...
args.keywords = []
for f in args.fields:
if f.startswith("keyword_"):
k = f[8:]
#and then add each keyword to the extraFieldDefaults so it is recognised thusly
extraFieldDefaults["keyword_%s" % k] = bool(False)
args.keywords += [k]
#same for physics groups
args.physicsGroups = sum((y.split(',') for y in args.physicsGroups), [])
args.physicsGroups = [x.strip()
for x in args.physicsGroups] #strips whitespace
#same for explainFields and explainInfo
args.explainFields = sum((y.split(',') for y in args.explainFields), [])
args.explainFields = [x.strip()
for x in args.explainFields] #strips whitespace
args.explainInfo = sum((y.split(',') for y in args.explainInfo), [])
args.explainInfo = [x.strip()
for x in args.explainInfo] #strips whitespace
if args.inDsTxt != '': args.inDS = readDsFromFile(args.inDsTxt)
#and same for inDS
args.inDS = sum((y.split(',') for y in args.inDS), [])
args.inDS = [x.strip() for x in args.inDS] #strips whitespace
#1. check field values are allowed, we obtain default field values at same time..
#2. For each entry in inDS, if contains wildcard we obtain list of DS, otherwise check DS exists. During this time we obtain the datasetid and numEvents properties, incase we need them
#3. For each of these DS, get parameters from ami matching the timestamp. Organize into fields and index by subprocessID
#4. Output a line to our output file
#1.
#before adding all the ami parameters, identify which of provided fields are: 1). Obtained from list_datasets command (dsFields) 2). actual parameters
dsFields = [
x for x in args.fields
if x in fieldDefaults.keys() and x not in ["subprocessID", "ldn"]
]
extraFields = [x for x in args.fields if x in extraFieldDefaults.keys()]
paramFields = [x for x in args.fields if x in paramDefaults.keys()]
if len(paramFields) > 0 and args.physicsGroups == [""]:
logging.error(
"You must specify at least one physics group. See -h for allowed groups"
)
return -1
#combine paramDefaults with fieldDefaults
fieldDefaults.update(paramDefaults)
#and with extra fields
fieldDefaults.update(extraFieldDefaults)
for field in args.fields:
if field not in fieldDefaults:
logging.error("%s is not a recognised field. Allowed fields are:" %
field)
logging.error(fieldDefaults.keys())
return -1
if args.oldTimestamp != "":
logging.info("oldTimestamp option specified. Running in diff mode...")
args.explainFields = args.fields
args.explainInfo = [
"explanation", "insert_time", "physicsGroup", "createdby"
]
#2.
#replace all '*' with '%' and strip "/"
args.inDS = [ds.replace("*", "%") for ds in args.inDS]
args.inDS = [ds.rstrip("/") for ds in args.inDS]
if len(args.inDS) == 0 or (len(args.inDS) == 1 and args.inDS[0] == ""):
logging.error(
"No datasets provided. Please specify datasets with the --inDS or --inDsTxt options"
)
return -1
logging.info(
"Fetching list of datasets from AMI (this may take a few minutes)...")
#obtain list of datasets
res = AtlasAPI.list_datasets(
client,
patterns=args.inDS,
fields=dsFields + ['ldn'],
ami_status="VALID"
) #changed status from %, to only catch valid now: wb 08/2015
logging.info("...Found %d datasets matching your selection" % len(res))
if len(res) == 0:
return 0
#NOTE: Should we allow retrieval of the extra information: keyword, genfiltereff, approx crossection, .. these all come from GetDatasetInfo ami command
dataset_values = dict()
for r in res:
mydict = dict()
dataset_values[str(r['ldn'])] = mydict
for field in r.items():
if str(field[0]) == "ldn": continue
if str(field[0]) not in args.fields: continue
mydict[str(field[0])] = str(field[1])
#also if we have the 'extra fields or keywords' we will need to execute AtlasAPI.get_dataset_info ..
if len(extraFields) > 0 or len(args.keywords) > 0:
info_res = AtlasAPI.get_dataset_info(client, str(r['ldn']))
#print(info_res)
if len(info_res) == 0:
logging.error("Unable to retrieve dataset info for %s" %
str(r['ldn']))
return -1
for field in extraFields:
#ignore the keyword_ fields
if field.startswith("keyword_"): continue
mydict[field] = float(info_res[0][unicode(field)]) if isfloat(
info_res[0][unicode(field)]) else extraFieldDefaults[field]
for k in args.keywords:
mydict["keyword_%s" % k] = int(
(k in str(info_res[0][unicode('keyword')]).split(",")))
#sort dataset_values as well as possible
from collections import OrderedDict
sorted_values = OrderedDict()
for ds in args.inDS:
if ds in dataset_values.keys():
sorted_values[ds] = dataset_values[ds]
for ds in sorted(dataset_values):
if ds not in sorted_values.keys():
sorted_values[ds] = dataset_values[ds]
dataset_values = sorted_values
logging.debug(dataset_values)
#res = client.execute(['GetDatasetInfo
for ds in args.inDS:
if '%' not in ds and ds not in dataset_values.keys():
logging.warning("Unknown dataset: %s" % ds)
datasetsToQuery = ",".join(dataset_values.keys())
#if using inDsTxt, retain any comment or blank lines in structure of output
complete_values = OrderedDict()
if args.inDsTxt != "":
# read lines
commentcount = 0
import re
txt = open(args.inDsTxt)
for tmpLine in txt:
# remove \n
tmpLine = re.sub('\n', '', tmpLine)
# remove white spaces
tmpLine = tmpLine.strip()
# skip comment or empty
if tmpLine.startswith('#') or tmpLine == '':
complete_values['comment%d' % (commentcount)] = tmpLine
commentcount = commentcount + 1
continue
# append
tmpLine = tmpLine.rstrip("/")
if tmpLine in dataset_values.keys():
complete_values[tmpLine] = dataset_values[tmpLine]
else:
print("cannot find %s" % tmpLine)
# close file
txt.close()
dataset_values = complete_values
logging.info(
"Obtaining %s for selected datasets at timestamp=%s... (please be patient)"
% (args.fields, args.timestamp))
#do as one query, to be efficient
if (args.timestamp == current_time):
res = client.execute([
'GetPhysicsParamsForDataset',
"--logicalDatasetName=%s" % datasetsToQuery,
"--timestamp='%s'" % args.timestamp
],
format='dom_object')
else:
res = client.execute([
'GetPhysicsParamsForDataset',
"--logicalDatasetName=%s" % datasetsToQuery,
"--timestamp='%s'" % args.timestamp, "--history=true"
],
format='dom_object')
#organize results by dataset
parameterQueryResults = dict()
for r in res.get_rows():
if r[u'logicalDatasetName'] not in parameterQueryResults.keys():
parameterQueryResults[r[u'logicalDatasetName']] = []
parameterQueryResults[r[u'logicalDatasetName']] += [
r
] #puts row in the list for this dataset
if args.oldTimestamp != "":
logging.info(
"Obtaining %s for selected datasets at timestamp=%s... (please be patient)"
% (args.fields, args.oldTimestamp))
res2 = client.execute([
'GetPhysicsParamsForDataset',
"--logicalDatasetName=%s" % datasetsToQuery,
"--timestamp='%s'" % args.oldTimestamp, "--history=true"
],
format='dom_object')
old_parameterQueryResults = dict()
for r in res2.get_rows():
if r[u'logicalDatasetName'] not in old_parameterQueryResults.keys(
):
old_parameterQueryResults[r[u'logicalDatasetName']] = []
old_parameterQueryResults[r[u'logicalDatasetName']] += [
r
] #puts row in the list for this dataset
headerString = ""
doneHeader = False
commentCache = ""
commentCount = 0
#result is a list of lists (each list is 1 row)
outputTable = []
tableHeaders = []
for ds in dataset_values.keys():
if ds.startswith('comment'):
if commentCount > 0: commentCache += "\n"
commentCache += dataset_values[ds]
commentCount = commentCount + 1
continue
#obtain list of parameters for this dataset
#if(args.timestamp==current_time):
# res = client.execute(['GetPhysicsParamsForDataset',"--logicalDatasetName=%s"% ds,"--timestamp='%s'"%args.timestamp], format='dom_object')
#else:
# res = client.execute(['GetPhysicsParamsForDataset',"--logicalDatasetName=%s"% ds,"--timestamp='%s'"%args.timestamp,"--history=true"], format='dom_object')
res = parameterQueryResults.get(ds, [])
if args.oldTimestamp != "":
res2 = old_parameterQueryResults.get(ds, [])
#first we have to determine how many subprocesses this ds has
dsSubprocesses = [0] #always have the 0 subprocess
for r in res:
sp = int(r[u'subprocessID'])
if sp not in dsSubprocesses: dsSubprocesses += [sp]
#now for each subprocess we have to locate each required field value (in paramFields)
#rank by physicsGroup
for sp in dsSubprocesses:
paramVals = dict()
paramVals2 = dict()
groupsWithVals = dict() #held for helpful output
#need to keep explanations for requested fields
explainInfo = dict()
for i in args.explainFields:
explainInfo[i] = dict()
for param in paramFields:
groupsWithVals[param] = []
bestGroupIndex = len(args.physicsGroups)
import copy
paramVals[param] = copy.copy(fieldDefaults[param])
for r in res:
if int(r[u'subprocessID']) != sp: continue
if str(r[u'paramName']) != param and not (
param == "crossSection_pb"
and str(r[u'paramName']) == "crossSection"):
continue
if str(r[u'physicsGroup']) not in args.physicsGroups:
groupsWithVals[param] += [(str(r[u'physicsGroup']),
str(r[u'paramValue']))]
continue
if args.physicsGroups.index(str(
r[u'physicsGroup'])) > bestGroupIndex:
continue
if args.physicsGroups.index(str(
r[u'physicsGroup'])) == bestGroupIndex:
logging.warning(
"Duplicate parameter %s for group %s in dataset %s (subprocess %d). Please report this!"
% (param, str(r[u'physicsGroup']), ds, sp))
paramVals[param] = str(r[u'paramValue'])
if param == "crossSection_pb":
paramVals[param] = str(
float(paramVals[param]) * 1000.0)
bestGroupIndex = args.physicsGroups.index(
str(r[u'physicsGroup']))
#keep the explanation info for the requested fields
if param in explainInfo.keys():
for e in args.explainInfo:
if unicode(e) not in r:
logging.error(
"Unrecognised explainInfo field: %s" % e)
return -1
explainInfo[param][e] = str(r[unicode(e)])
if args.oldTimestamp != "":
bestGroupIndex = len(args.physicsGroups)
paramVals2[param] = copy.copy(fieldDefaults[param])
for r in res2:
if int(r[u'subprocessID']) != sp: continue
if str(r[u'paramName']) != param and not (
param == "crossSection_pb"
and str(r[u'paramName']) == "crossSection"):
continue
if str(r[u'physicsGroup']) not in args.physicsGroups:
continue
if args.physicsGroups.index(str(
r[u'physicsGroup'])) > bestGroupIndex:
continue
if args.physicsGroups.index(str(
r[u'physicsGroup'])) == bestGroupIndex:
logging.warning(
"Duplicate parameter %s for group %s in dataset %s (subprocess %d). Please report this!"
% (param, str(r[u'physicsGroup']), ds, sp))
paramVals2[param] = str(r[u'paramValue'])
if param == "crossSection_pb":
paramVals2[param] = str(
float(paramVals2[param]) * 1000.0)
bestGroupIndex = args.physicsGroups.index(
str(r[u'physicsGroup']))
#at this stage, parameters reside in paramVals dict or dataset_values[ds] dict
#print them in the requested order .. if any is "None" then stop, because it doesn't have a default value and didn't find a value for it either
rowString = ""
rowList = []
firstPrint = False
for param in args.fields:
val = None
if param == "ldn": val = ds
elif param == "subprocessID": val = sp
elif param in dataset_values[ds].keys():
val = dataset_values[ds][param]
else:
val = paramVals.get(param, None)
if val == None:
if args.outFile != sys.stdout:
logging.warning(
"dataset %s (subprocess %d) does not have parameter %s, which has no default."
% (ds, sp, param))
if len(groupsWithVals.get(param, [])) > 0:
logging.warning(
"The follow physicsGroups have defined that parameter though:"
)
logging.warning(groupsWithVals[param])
val = "#UNKNOWN#"
#return -1
#if isfloat(str(val)): val = "%.6g" % float(val)
if args.oldTimestamp != "":
#diff val to old val
val2 = None
if param == "ldn": val2 = ds
elif param == "subprocessID": val2 = sp
elif param in dataset_values[ds].keys():
val2 = dataset_values[ds][param]
else:
val2 = paramVals2.get(param, None)
if val2 == None: val2 = "#UNKNOWN#"
#if isfloat(str(val2)): val2 = "%.6g" % float(val)
if (str(val) != str(val2)):
if not firstPrint: print("%s:" % ds)
firstPrint = True
print(" %s : %s ---> %s" %
(param, str(val2), str(val)))
print(" insert_time : %s" %
explainInfo[param]['insert_time'])
print(" explanation : %s" %
explainInfo[param]['explanation'])
print(" createdby : %s" %
explainInfo[param]['createdby'])
print(" physicsGroup : %s" %
explainInfo[param]['physicsGroup'])
continue
rowList += [str(val)]
if rowString != "" and args.delim != "":
rowString += args.delim
rowString += str(val)
#inspect the type of str(val) to build up the header
if not doneHeader:
headerString += param
if args.outFile != sys.stdout:
if type(fieldDefaults[param]) == bool:
headerString += "/O:"
elif type(fieldDefaults[param]) == int:
headerString += "/I:"
elif type(fieldDefaults[param]) == float:
headerString += "/D:"
elif isfloat(str(val)):
headerString += "/D:"
#elif isint(str(val)): headerString += "/I:" TO BE SAFE WE MAKE ALL NUMERIC FIELDS FLOATS, EXCEPT if the default value is type int
else:
headerString += "/C:"
else:
v = param
if param in paramUnits:
headerString += " [%s]" % paramUnits[param]
v += " [%s]" % paramUnits[param]
tableHeaders += [v]
headerString += " "
if args.oldTimestamp != "":
continue #print nothing more for diff mode
if not doneHeader:
doneHeader = True
if args.outFile != sys.stdout:
print(headerString[:-1], file=args.outFile)
if commentCount > 0:
if args.outFile != sys.stdout and args.delim != "":
print(commentCache, file=args.outFile)
outputTable += [["COMMENT", commentCache]]
commentCache = ''
commentCount = 0
if args.outFile != sys.stdout and args.delim != "":
print(rowString, file=args.outFile)
outputTable += [rowList]
#also print the required explanations
for (field, expl) in explainInfo.items():
outString = "#%s: { " % field
doneFirst = False
for eField in args.explainInfo:
if doneFirst: outString += " , "
if not eField in expl.keys():
outString += " %s: <NONE .. value is default>" % eField
else:
outString += "%s: %s" % (eField, expl[eField])
doneFirst = True
outString += " }"
#print(outString,file=args.outFile)
outputTable += [["COMMENT", outString]]
if args.oldTimestamp != "":
args.outFile.close()
return 0
#print the table in nicely formatted state
if args.outFile == sys.stdout or args.delim == "":
#determine column widths
columnWidths = [0] * len(args.fields)
for i in range(0, len(tableHeaders)):
columnWidths[i] = len(tableHeaders[i])
for r in outputTable:
if len(r) > 0 and r[0] == "COMMENT": continue
for i in range(0, len(r)):
if len(r[i]) > columnWidths[i]: columnWidths[i] = len(r[i])
lineout = ""
for i in range(0, len(tableHeaders)):
lineout += tableHeaders[i].ljust(columnWidths[i]) + " "
print(lineout)
for r in outputTable:
lineout = ""
if len(r) > 0 and r[0] == "COMMENT": lineout = r[1]
else:
for i in range(0, len(r)):
lineout += r[i].ljust(columnWidths[i]) + " "
print(lineout, file=args.outFile)
#print the footer, which is the command to reproduce this output
import os
if args.outFile != sys.stdout:
#remove comment from dataset_values
datasetss = [
x for x in dataset_values.keys() if not x.startswith("comment")
]
print("", file=args.outFile)
print("#lsetup \"asetup %s,%s\" pyAMI" %
(os.environ.get('AtlasProject', 'UNKNOWN!'),
os.environ.get('AtlasVersion', 'UNKNOWN!')),
file=args.outFile)
print(
"#getMetadata.py --timestamp=\"%s\" --physicsGroups=\"%s\" --fields=\"%s\" --inDS=\"%s\""
% (args.timestamp, ",".join(args.physicsGroups), ",".join(
args.fields), ",".join(datasetss)),
file=args.outFile)
logging.info("Results written to: %s" % args.outFile.name)
args.outFile.close()