def yamlTest(cls):
content ="""
Translators:
LASI: LeftASI
RASI: RightASI
LPSI: LeftPSI
RPSI: RightPSI
"""
config = files.readContent(content)
def jsonTest(cls):
content ="""
{
"Translators": {
"LASI": "example glossary",
"RASI": "example glossary"
}
}
"""
config = files.readContent(content)
import ipdb; ipdb.set_trace()
def test_translators24_initiateWith_25markerset(self):
contents24 = """
Translators:
LASI: None
RASI: None
LPSI: None
RPSI: None
RTHI: None
RKNE: None
RTIAP: None
RTIAD: None
RTIB: None
RANK: None
RTIAP: None
RTIAD: None
RHEE: None
RSMH: None
RTOE: None
RFMH: None
RVMH: None
LTHI: None
LKNE: None
LTHAP: None
LTHAD: None
LTIB: None
LANK: None
LTIAP: None
LTIAD: None
LHEE: None
LSMH: None
LTOE: None
LFMH: None
LVMH: None
RKNM: None
LKNM: None
RMED: None
LMED: None
C7: T2
T10: None
CLAV: None
STRN: CLAV
LFHD: GLAB
LBHD: LMAS
RFHD: GLAB
RBHD: RMAS
LSHO: None
LELB: None
LWRB: None
LWRA: None
LFIN: None
RSHO: None
RELB: None
RWRB: None
RWRA: None
RFIN: None
"""
translators = files.readContent(contents24)
MAIN_PATH = pyCGM2.TEST_DATA_PATH + "LowLevel\\translators\\cgm2.5\\"
staticFilename = "static.c3d"
DATA_PATH_OUT = pyCGM2.TEST_DATA_PATH_OUT + "LowLevel\\translators\\cgm2.5\\"
files.createDir(DATA_PATH_OUT)
acqStatic = btkTools.smartReader(str(MAIN_PATH + staticFilename))
acqStatic2 = btkTools.applyTranslators(acqStatic,
translators["Translators"])
btkTools.smartWriter(
acqStatic2,
DATA_PATH_OUT + "translators24_initiateWith_25markerset.c3d")
np.testing.assert_equal(
acqStatic2.GetPoint(utils.str("C7")).GetValues(),
acqStatic.GetPoint(utils.str("T2")).GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint(utils.str("LFHD")).GetValues(),
acqStatic.GetPoint(utils.str("GLAB")).GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint(utils.str("RFHD")).GetValues(),
acqStatic.GetPoint(utils.str("GLAB")).GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint(utils.str("LBHD")).GetValues(),
acqStatic.GetPoint(utils.str("LMAS")).GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint(utils.str("RBHD")).GetValues(),
acqStatic.GetPoint(utils.str("RMAS")).GetValues())
def test_scenario4Test(self):
"""
you want to swp to markers
( e.g : LTHI swap with LTHAD)
return:
in the final c3d, both markers are swapped. there are no _origin markers
"""
contents24 = """
Translators:
LASI: None
RASI: None
LPSI: None
RPSI: None
RTHI: None
RKNE: None
RTIAP: None
RTIAD: None
RTIB: None
RANK: None
RTIAP: None
RTIAD: None
RHEE: None
RSMH: None
RTOE: None
RFMH: None
RVMH: None
LTHI: LTHAD
LKNE: None
LTHAP: None
LTHAD: LTHI
LTIB: None
LANK: None
LTIAP: None
LTIAD: None
LHEE: None
LSMH: None
LTOE: None
LFMH: None
LVMH: None
RKNM: None
LKNM: None
RMED: None
LMED: None
C7: None
T10: None
CLAV: None
STRN: None
LFHD: None
LBHD: None
RFHD: None
RBHD: None
LSHO: None
LELB: None
LWRB: None
LWRA: None
LFIN: None
RSHO: None
RELB: None
RWRB: None
RWRA: None
RFIN: None
"""
translators = files.readContent(contents24)
MAIN_PATH = pyCGM2.TEST_DATA_PATH + "LowLevel\\translators\\scenario4\\"
staticFilename = "staticAlana.c3d"
DATA_PATH_OUT = pyCGM2.TEST_DATA_PATH_OUT + "LowLevel\\translators\\scenario4\\"
files.createDir(DATA_PATH_OUT)
acqStatic = btkTools.smartReader(str(MAIN_PATH + staticFilename))
acqStatic2 = btkTools.applyTranslators(acqStatic,
translators["Translators"])
btkTools.smartWriter(acqStatic2, DATA_PATH_OUT + "scenario4Test.c3d")
np.testing.assert_equal(
acqStatic2.GetPoint(utils.str("LTHI")).GetValues(),
acqStatic.GetPoint(utils.str("LTHAD")).GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint(utils.str("LTHAD")).GetValues(),
acqStatic.GetPoint(utils.str("LTHI")).GetValues())
def test_scenario1Test(self):
"""
basic test.
the pyCGM2 marker is not in the c3d. it points to you own label which is not a pyCGM2 marker
( e.g : LASI points to LeftASI)
return:
=> own markers and pyGM2 markers are both IN the final c3d
"""
contents24 = """
Translators:
LASI: LeftASI
RASI: RightASI
LPSI: LeftPSI
RPSI: RightPSI
RTHI: None
RKNE: None
RTIAP: None
RTIAD: None
RTIB: None
RANK: None
RTIAP: None
RTIAD: None
RHEE: None
RSMH: None
RTOE: None
RFMH: None
RVMH: None
LTHI: None
LKNE: None
LTHAP: None
LTHAD: None
LTIB: None
LANK: None
LTIAP: None
LTIAD: None
LHEE: None
LSMH: None
LTOE: None
LFMH: None
LVMH: None
RKNM: None
LKNM: None
RMED: None
LMED: None
C7: None
T10: None
CLAV: None
STRN: None
LFHD: None
LBHD: None
RFHD: None
RBHD: None
LSHO: None
LELB: None
LWRB: None
LWRA: None
LFIN: None
RSHO: None
RELB: None
RWRB: None
RWRA: None
RFIN: None
"""
translators = files.readContent(contents24)
MAIN_PATH = pyCGM2.TEST_DATA_PATH + "LowLevel\\translators\\scenario1\\"
staticFilename = "static.c3d"
DATA_PATH_OUT = pyCGM2.TEST_DATA_PATH_OUT + "LowLevel\\translators\\scenario1\\"
files.createDir(DATA_PATH_OUT)
acqStatic = btkTools.smartReader(str(MAIN_PATH + staticFilename))
acqStatic2 = btkTools.applyTranslators(acqStatic,
translators["Translators"])
btkTools.smartWriter(acqStatic2, DATA_PATH_OUT + "scenario1Test.c3d")
np.testing.assert_equal(
acqStatic2.GetPoint(utils.str("LeftASI")).GetValues(),
acqStatic2.GetPoint(utils.str("LASI")).GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint(utils.str("RightASI")).GetValues(),
acqStatic2.GetPoint(utils.str("RASI")).GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint(utils.str("LeftPSI")).GetValues(),
acqStatic2.GetPoint(utils.str("LPSI")).GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint(utils.str("RightPSI")).GetValues(),
acqStatic2.GetPoint(utils.str("RPSI")).GetValues())
def test_scenario3Test(self):
"""
the pyCGM2 marker is IN the c3d. it points to another pyCGM2 marker which is IN c3d
( e.g : LTHI points to LTHAP)
return:
the translator and your own markers point to similar values (e.g LTHI amd LTAP point same values)
a new marker suffixed with _origin for keeping a trace of the translator found in the c3d ( eg LTHi renamed LTHI_origin )
"""
contents24 = """
Translators:
LASI: None
RASI: None
LPSI: None
RPSI: None
RTHI: None
RKNE: None
RTIAP: None
RTIAD: None
RTIB: None
RANK: None
RTIAP: None
RTIAD: None
RHEE: None
RSMH: None
RTOE: None
RFMH: None
RVMH: None
LTHI: LTHAD
LKNE: None
LTHAP: None
LTHAD: None
LTIB: None
LANK: None
LTIAP: None
LTIAD: None
LHEE: None
LSMH: None
LTOE: None
LFMH: None
LVMH: None
RKNM: None
LKNM: None
RMED: None
LMED: None
C7: None
T10: None
CLAV: None
STRN: None
LFHD: None
LBHD: None
RFHD: None
RBHD: None
LSHO: None
LELB: None
LWRB: None
LWRA: None
LFIN: None
RSHO: None
RELB: None
RWRB: None
RWRA: None
RFIN: None
"""
translators = files.readContent(contents24)
MAIN_PATH = pyCGM2.TEST_DATA_PATH + "LowLevel\\translators\\scenario3\\"
staticFilename = "staticAlana.c3d"
DATA_PATH_OUT = pyCGM2.TEST_DATA_PATH_OUT + "LowLevel\\translators\\scenario3\\"
files.createDir(DATA_PATH_OUT)
acqStatic = btkTools.smartReader(str(MAIN_PATH + staticFilename))
acqStatic2 = btkTools.applyTranslators(acqStatic,
translators["Translators"])
btkTools.smartWriter(acqStatic2, DATA_PATH_OUT + "scenario3Test.c3d")
np.testing.assert_equal(
acqStatic2.GetPoint(utils.str("LTHI")).GetValues(),
acqStatic2.GetPoint(utils.str("LTHAD")).GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint(utils.str("LTHI_origin")).GetValues(),
acqStatic.GetPoint(utils.str("LTHI")).GetValues())