In the script argument box of a python nexus operation, you can edit:
>>> -side=Left -b=50 -e=100
(Left knee calibration between frames 50 and 100)
"""
import os
import traceback
import logging
import argparse
import matplotlib.pyplot as plt
import numpy as np
# pyCGM2 settings
import pyCGM2
from pyCGM2 import log
log.setLoggingLevel(logging.INFO)
# vicon nexus
import ViconNexus
# pyCGM2 libraries
from pyCGM2 import enums
from pyCGM2.Tools import btkTools
from pyCGM2.Utils import files
from pyCGM2.Nexus import nexusFilters, nexusUtils, nexusTools
from pyCGM2.Model import modelFilters
from pyCGM2.Configurator import CgmArgsManager
from pyCGM2.Lib.CGM import kneeCalibration
# -*- coding: utf-8 -*-
"""
Created on Mon Oct 10 12:46:40 2016
@author: Fabien Leboeuf ( Salford Univ, UK)
"""
import numpy as np
import scipy as sp
import logging
import pyCGM2
from pyCGM2 import log; log.setLoggingLevel(logging.INFO)
# pyCGM2
from pyCGM2.Tools import btkTools
from pyCGM2.Model.CGM2 import cgm
from pyCGM2.Model import modelFilters,modelDecorator, frame
import pyCGM2.enums as pyCGM2Enums
class CGM11_calibrationTest():
@classmethod
def basicCGM1_manualOffsets(cls):
MAIN_PATH = pyCGM2.TEST_DATA_PATH + "CGM1\\CGM1-TESTS\\KAD-basic\\"
staticFilename = "MRI-US-01, 2008-08-08, 3DGA 02.c3d"
# -*- coding: utf-8 -*-
import matplotlib.pyplot as plt
import numpy as np
import logging
import pyCGM2
from pyCGM2 import log; log.setLoggingLevel(logging.DEBUG)
import pyCGM2
# btk
from pyCGM2 import btk
# pyCGM2
from pyCGM2.Tools import btkTools
from pyCGM2.Model import modelFilters,modelDecorator
from pyCGM2.Model.CGM2 import cgm2
import pyCGM2.enums as pyCGM2Enums
from pyCGM2.Model.Opensim import opensimFilters
# enableLongitudinalRotation in Static and Motion filter rotate along Z
class CGM2_SARA_test():
@classmethod
def CGM2_3_SARA_test(cls):
MAIN_PATH = pyCGM2.TEST_DATA_PATH + "CGM2\\cgm2.3\\Knee Calibration\\"
staticFilename = "Static.c3d"
leftKneeFilename = "Left Knee.c3d"
# -*- coding: utf-8 -*-
import matplotlib.pyplot as plt
import numpy as np
import logging
import pyCGM2
from pyCGM2 import log
log.setLoggingLevel(logging.DEBUG)
import pyCGM2
# btk
from pyCGM2 import btk
# pyCGM2
from pyCGM2.Tools import btkTools
from pyCGM2.Model import modelFilters, modelDecorator
from pyCGM2.Model.CGM2 import cgm2
from pyCGM2 import enums
from pyCGM2.Model.CGM2.coreApps import kneeCalibration
from pyCGM2.Utils import files
from pyCGM2.Model.Opensim import opensimFilters
# enableLongitudinalRotation in Static and Motion filter rotate along Z
class CGM2_Knee_test():
@classmethod
def CGM2_4_SARA_test(cls):
MAIN_PATH = pyCGM2.TEST_DATA_PATH + "CGM2\\cgm2.4\\Knee Calibration\\"
# -*- coding: utf-8 -*-
import numpy as np
import pdb
import logging
import json
import pyCGM2
from pyCGM2 import log
log.setLoggingLevel(logging.WARNING)
# pyCGM2
from pyCGM2.Tools import btkTools
from pyCGM2.Model.CGM2 import cgm
from pyCGM2.Model import modelFilters, modelDecorator, frame
import pyCGM2.enums as pyCGM2Enums
from collections import OrderedDict
from pyCGM2.Utils import files
class translatorScenario_tests():
@classmethod
def scenario1Test(cls):
"""
basic test.
the pyCGM2 marker is not in the c3d. it points to you own label which is not a pyCGM2 marker
( e.g : LASI points to LeftASI)
return:
=> own markers and pyGM2 markers are both IN the final c3d
