def mergeMatchesOnQueries(inFile, outFile):
mapFile = "%s.map" % ( inFile )
PathUtils.convertPathFileIntoMapFileWithQueryCoordsOnly( inFile, mapFile )
cmd = "mapOp"
cmd += " -q %s" % ( mapFile )
cmd += " -m"
cmd += " 2>&1 > /dev/null"
exitStatus = os.system( cmd )
if exitStatus != 0:
print "ERROR: mapOp returned %i" % ( exitStatus )
sys.exit(1)
os.remove( mapFile )
mergeFile = "%s.merge" % ( mapFile )
mergeFileHandler = open( mergeFile, "r" )
outFileHandler = open( outFile, "w" )
m = Map()
while True:
line = mergeFileHandler.readline()
if line == "":
break
m.reset()
m.setFromString( line, "\t" )
m.writeAsQueryOfPath( outFileHandler )
mergeFileHandler.close()
os.remove( mergeFile )
outFileHandler.close()
