def performance_metrics(df_labels, df_embeddings_verification, track_embedding,
cfg, frame_list, iteration):
speaker_list = df_labels.columns.tolist()
df_precision = pd.DataFrame(columns=speaker_list,
index=cfg.audio.threshold)
df_roc = pd.DataFrame(columns=speaker_list, index=cfg.audio.threshold)
df_recall = pd.DataFrame(columns=speaker_list, index=cfg.audio.threshold)
df_far = pd.DataFrame(columns=speaker_list, index=cfg.audio.threshold)
df_frr = pd.DataFrame(columns=speaker_list, index=cfg.audio.threshold)
der = []
metric = DiarizationErrorRate(skip_overlap=True, collar=cfg.audio.collar)
groundtruth = load_rttm(cfg.audio.rttm_path)[cfg.audio.uri[iteration]]
for threshold in cfg.audio.threshold:
df_output = multi_speaker_verification(
track_embedding=track_embedding,
df_labels=df_labels,
df_embeddings_verification=df_embeddings_verification,
threshold=threshold)
for speaker in speaker_list:
try:
df_precision.loc[threshold,
speaker] = precision_score(df_labels[speaker],
df_output[speaker],
average='binary')
except:
df_precision.loc[threshold, speaker] = 0
try:
df_recall.loc[threshold,
speaker] = recall_score(df_labels[speaker],
df_output[speaker],
average='binary')
except:
df_recall.loc[threshold, speaker] = 0
try:
df_roc.loc[threshold,
speaker] = roc_auc_score(df_labels[speaker],
df_output[speaker],
average=None)
except:
df_roc.loc[threshold, speaker] = 0
try:
far, frr = FAR_FRR(y_true=df_labels[speaker],
y_pred=df_output[speaker])
df_far.loc[threshold, speaker] = far
df_frr.loc[threshold, speaker] = frr
except:
df_far.loc[threshold, speaker] = 0
df_frr.loc[threshold, speaker] = 0
components = metric(groundtruth,
merge_frames(df_outputs=df_output,
frame_list=frame_list,
filename=cfg.audio.uri[iteration] +
'_' + str(threshold)),
detailed=True)
components = metric[:]
der.append(components)
return df_precision, df_recall, df_roc, df_far, df_frr, der
def DER(df_labels, df_outputs, frame_list, cfg, collar):
speaker_list = df_labels.columns.tolist()
rttm_segment = load_rttm(cfg.audio.rttm_path)[cfg.audio.uri[0]]
E_MISS = 0
E_FA = 0
E_Spk = 0
reference_length = 0
length = (len(frame_list))
for i, frame in enumerate(frame_list):
frame_start, frame_end = float(frame[0]), float(frame[1])
segments = []
for segment in rttm_segment.get_timeline():
if list(rttm_segment.get_labels(segment))[0] in speaker_list:
intersection = max(
0,
min(float(frame[1]), segment.end) -
max(float(frame[0]), segment.start))
if intersection > collar:
segments.append(segment)
#print('start', segment.start)
#print('end', segment.end)
reference_length = reference_length + intersection
if len(segments) == 0:
if 1 in df_outputs.iloc[i, :].to_numpy():
E_FA = E_FA + (float(frame[1]) - float(frame[0]))
if len(segments) > 0:
if 1 not in (df_outputs.iloc[i, :].to_numpy()):
E_MISS = E_MISS + (float(frame[1]) - float(frame[0]))
else:
active_speakers = []
for interval in segments:
intersection = max(
0,
min(float(frame[1]), interval.end) -
max(float(frame[0]), interval.start))
active_speakers.append(
list(rttm_segment.get_labels(interval))[0])
for active_spk in active_speakers:
if (df_outputs.loc[i, active_spk] == 0):
E_Spk = E_Spk + (
segments[active_speakers.index(active_spk)].end -
segments[active_speakers.index(active_spk)].start)
inactive_speakers = list(
set(speaker_list) - set(active_speakers))
for spk in inactive_speakers:
if (df_outputs.loc[i, spk] == 1):
E_Spk = E_Spk + (float(frame[1]) - float(frame[0]))
print(reference_length)
print(E_MISS)
print(E_FA)
print(E_Spk)
return (E_MISS + E_Spk + E_FA) / reference_length
def gecko(args):
hypotheses_path = args['<hypotheses_path>']
uri = args['<uri>']
colors = get_colors(uri)
distances = {}
if Path(hypotheses_path).exists():
hypotheses = load_rttm(hypotheses_path)
hypothesis = hypotheses[uri]
else: # protocol
protocol = get_protocol(args['<hypotheses_path>'])
reference = get_file(protocol, uri)
hypothesis = reference['annotation']
annotated = get_annotated(reference)
hypotheses_path = Path(hypotheses_path)
protocol = args['--database.task.protocol']
features = None
if protocol:
protocol = get_protocol(protocol)
embeddings = args['--embeddings']
reference, features = get_file(protocol, uri, embeddings=embeddings)
if args['--map']:
print(f"mapping {uri} with {protocol}")
diarizationErrorRate = DiarizationErrorRate()
annotated = get_annotated(reference)
optimal_mapping = diarizationErrorRate.optimal_mapping(
reference['annotation'], hypothesis, annotated)
hypothesis = hypothesis.rename_labels(mapping=optimal_mapping)
hypothesis = update_labels(hypothesis, distances) # tag unsure clusters
distances_per_speaker = get_distances_per_speaker(
features, hypothesis) if features else {}
if args['--tag_na']:
whole_file = Segment(0., annotated.segments_boundaries_[-1])
not_annotated = annotated.gaps(whole_file).to_annotation(na())
hypothesis = hypothesis.crop(annotated).update(not_annotated)
gecko_json = annotation_to_GeckoJSON(hypothesis, distances_per_speaker,
colors)
if hypotheses_path.exists():
dir_path = hypotheses_path.parent
else:
dir_path = Path(".")
json_path = os.path.join(dir_path, f'{uri}.json')
with open(json_path, 'w') as file:
json.dump(gecko_json, file)
print(f"succefully dumped {json_path}")
def speakers(args):
hypotheses_path = args['<hypotheses_path>']
uri = args['<uri>']
if Path(hypotheses_path).exists():
hypotheses = load_rttm(hypotheses_path)
hypothesis = hypotheses[uri]
else: # protocol
distances = {}
protocol = get_protocol(args['<hypotheses_path>'])
reference = get_file(protocol, uri)
hypothesis = reference['annotation']
annotated = get_annotated(reference)
print(uri)
print(f"Number of speakers: {len(hypothesis.labels())}")
print(f"Chart:\n{hypothesis.chart()}")
def from_rttm(cls, path: Union[str, Path]) -> 'Continuum':
"""
Load annotations from a RTTM file. The file name field will be used
as an annotation's annotator
Parameters
----------
path: Path or str
Path to the CSV file storing annotations
Returns
-------
continuum : Continuum
New continuum object loaded from the RTTM file
"""
annotations = load_rttm(str(path))
continuum = cls()
for uri, annot in annotations.items():
continuum.add_annotation(uri, annot)
return continuum
def get_friends_per_speaker(rttm_files, BABYTRAIN):
"""
Given a list of .rttm files, return the dictionnary
whose :
- key is a speaker.
- value is a list of speakers that appear in the same file than the key.
If BABYTRAIN = True, skip the speakers whose name does not start by !
"""
friends_per_speaker = {}
for rttm in rttm_files:
basename = os.path.splitext(os.path.basename(rttm))[0]
data = pyda.load_rttm(rttm)
if data != {}:
annotation = data[basename]
# Get the list of speakers participating to this file
speakers = annotation.labels()
if BABYTRAIN:
speakers = [s for s in speakers if s.startswith("!")]
# For each speaker, add his/her friends.
for speaker in speakers:
if speaker not in friends_per_speaker.keys():
friends_per_speaker[speaker] = set(speakers)
else:
friends_per_speaker[speaker] |= set(speakers)
# Replace friends of investigators by empty set
if BABYTRAIN:
for k, v in friends_per_speaker.items():
if k.startswith("!INV"):
friends_per_speaker[k] = set()
return friends_per_speaker
def get_der(cfg, rttm, output_annotations):
metric = DiarizationErrorRate(skip_overlap=True, collar=cfg.audio.collar)
groundtruth = load_rttm(rttm)[rttm[rttm.rfind('/')+1:rttm.find('.')]]
der = metric(groundtruth, output_annotations, detailed=False)
return der
def main():
arguments = docopt(__doc__, version='Evaluation')
collar = float(arguments['--collar'])
skip_overlap = arguments['--skip-overlap']
tolerance = float(arguments['--tolerance'])
# protocol
protocol_name = arguments['<database.task.protocol>']
preprocessors = dict()
if arguments['overlap']:
if skip_overlap:
msg = ('Option --skip-overlap is not supported '
'when evaluating overlapped speech detection.')
sys.exit(msg)
preprocessors = {'annotation': to_overlap}
protocol = get_protocol(protocol_name,
progress=True,
preprocessors=preprocessors)
# subset (train, development, or test)
subset = arguments['--subset']
if arguments['spotting']:
hypothesis_json = arguments['<hypothesis.json>']
with open(hypothesis_json, mode='r') as fp:
hypotheses = json.load(fp)
output_prefix = hypothesis_json[:-5]
latencies = [float(l) for l in arguments['--latency']]
filters = arguments['--filter']
if filters:
from sympy import sympify, lambdify, symbols
speech = symbols('speech')
filter_funcs = []
filter_funcs = [
lambdify([speech], sympify(expression))
for expression in filters
]
filter_func = lambda speech: \
any(~func(speech) for func in filter_funcs)
else:
filter_func = None
spotting(protocol,
subset,
latencies,
hypotheses,
output_prefix,
filter_func=filter_func)
sys.exit(0)
hypothesis_rttm = arguments['<hypothesis.rttm>']
try:
hypotheses = load_rttm(hypothesis_rttm)
except FileNotFoundError:
msg = f'Could not find file {hypothesis_rttm}.'
sys.exit(msg)
except:
msg = (f'Failed to load {hypothesis_rttm}, please check its format '
f'(only RTTM files are supported).')
sys.exit(msg)
if arguments['detection']:
detection(protocol,
subset,
hypotheses,
collar=collar,
skip_overlap=skip_overlap)
if arguments['overlap']:
detection(protocol,
subset,
hypotheses,
collar=collar,
skip_overlap=skip_overlap)
if arguments['segmentation']:
segmentation(protocol, subset, hypotheses, tolerance=tolerance)
if arguments['diarization']:
greedy = arguments['--greedy']
diarization(protocol,
subset,
hypotheses,
greedy=greedy,
collar=collar,
skip_overlap=skip_overlap)
if arguments['identification']:
identification(protocol,
subset,
hypotheses,
collar=collar,
skip_overlap=skip_overlap)
lambdify([speech], sympify(expression))
for expression in filters]
filter_func = lambda speech: \
any(~func(speech) for func in filter_funcs)
else:
filter_func = None
spotting(protocol, subset, latencies, hypotheses, output_prefix,
filter_func=filter_func)
sys.exit(0)
hypothesis_rttm = arguments['<hypothesis.rttm>']
try:
hypotheses = load_rttm(hypothesis_rttm)
except FileNotFoundError:
msg = f'Could not find file {hypothesis_rttm}.'
sys.exit(msg)
except:
msg = (
f'Failed to load {hypothesis_rttm}, please check its format '
f'(only RTTM files are supported).'
)
sys.exit(msg)
if arguments['detection']:
detection(protocol, subset, hypotheses,
collar=collar, skip_overlap=skip_overlap)
def main():
parser = argparse.ArgumentParser()
parser.add_argument(
"path",
type=str,
help=
"Relative path to the database folder, containing" # Positional Argument
"train, dev, and test sub-folders.")
parser.add_argument("-d",
"--duration",
type=int,
default=60,
help="Duration of a trial. (Default to 60 seconds)")
parser.add_argument(
'--bbt',
action='store_true',
help="Indicates whether the corpora is BabyTrain or not. If true,"
"skip all the speakers whose name doesn't start by '!'.")
args = parser.parse_args()
# Parameters
DURATION_TRIAL = args.duration
DATABASE_PATH = os.path.join(
os.getcwd(), args.path) # needs to loop through dev and test
BABYTRAIN = args.bbt
# Header
trials_txt = "target_speaker\tfile_basename\tbeginning_time\tend_time\tduration_total_speech\tduration_overlapping_speech\n"
# Extract target and non-target trials
rttm_files = utils.get_dev_test_rttm(DATABASE_PATH)
## First, get the dictionnary of every friends of every speakers.
friends_per_speaker = get_friends_per_speaker(rttm_files, BABYTRAIN)
for rttm in rttm_files:
basename = os.path.splitext(os.path.basename(rttm))[0]
data = pyda.load_rttm(rttm)
if data != {}:
annotation = data[basename]
participants = annotation.labels()
if BABYTRAIN:
participants = [p for p in participants if p.startswith("!")]
all_friends = get_friends_of_participants(friends_per_speaker,
participants)
last_offset = annotation.get_timeline()[-1][1]
for end in range(DURATION_TRIAL, int(last_offset), DURATION_TRIAL):
beg = end - DURATION_TRIAL
chunk = annotation.crop(Segment(beg, end))
targets = chunk.labels()
if BABYTRAIN:
targets = [t for t in targets if t.startswith("!")]
overlapping_chunk = utils.overlapping_annotation(chunk)
# A speaker is defined as a target speaker for a chunk c,
# when he/she is speaking in c.
for target in targets:
tot_speech = chunk.label_duration(target)
overlapping_speech = overlapping_chunk.label_duration(
target)
trials_txt += "%s\t%s\t%d\t%d\t%.3f\t%.3f\n" % (
target, basename, beg, end, tot_speech,
overlapping_speech)
non_targets = list(set(all_friends) - set(targets))
# A speaker is defined as a non-target speaker for a chunk c,
# when he/she is not speaking in c, but speaks somewhere in whatever file
# where one of the target speaker is also participating
for non_target in non_targets:
trials_txt += "%s\t%s\t%d\t%d\t%.1f\t%.1f\n" % (
non_target, basename, beg, end, 0.0, 0.0)
with open(os.path.join(DATABASE_PATH, "trials_%d.txt" % DURATION_TRIAL),
"w") as f:
f.write(trials_txt[:-1])
print("trials.txt generated in %s" % DATABASE_PATH)
device=device,
verbose=verbose,
rate=encoder_rate)
if save_test_emb:
np.save(inf_path + '{}_embeds.npy'.format(case), embed)
np.save(inf_path + '{}_embeds_times.npy'.format(case), info[0])
timelst = Diarize(scotus_ral,
embed,
info[0],
sim_thresh=diar,
score_thresh=score)
diar_to_rttm(timelst, case, di_path)
rttmto_RALrttm(case, scotus_ral, rttm_path, di_path)
predict = case + '_rdsv.rttm'
ral_label = case + '_ral.rttm'
predictions = load_rttm(di_path + predict)[case]
groundtruths = load_rttm(di_path + ral_label)[case]
der.append(
metric(groundtruths, predictions,
detailed=True)['diarization error rate'])
size.append(sz)
bycase = list(zip([item.split('.')[0] for item in set_dict['t']], der, size))
desc = stats.describe(der)
settings = ['Param:', encoder_rate, '|', diar, '-', score]
with open(test_eval_path, 'w') as f:
write = csv.writer(f)
write.writerow(settings)
write.writerows(bycase)
write.writerow(desc)
from pyannote.database.util import load_rttm
from pyannote.core import Segment, notebook
from pyannote.audio.features import RawAudio
#from IPython.display import Audio
import torch
from pyannote.metrics.diarization import DiarizationErrorRate
Audio_File = {
'uri':
'ES2011a.Mix-Headset',
'audio':
'/home/lucas/PycharmProjects/Data/pyannote/amicorpus/ES2011a/audio/ES2011a.Mix-Headset.wav'
}
groundtruth = load_rttm(
'/home/lucas/PycharmProjects/Data/pyannote/AMI/MixHeadset.development.rttm'
)[Audio_File['uri']]
for segment in groundtruth.get_timeline():
print(list(groundtruth.get_labels(segment))[0])
pipeline = torch.hub.load('pyannote/pyannote-audio', 'dia_ami')
diarization = pipeline(Audio_File)
#print(diarization)
metric = DiarizationErrorRate(collar=0.25, skip_overlap=True)
der = metric(groundtruth, diarization)
print(der)
#print('done')
def performance_metrics(df_labels, df_embeddings_verification, track_embedding,
cfg, frame_list, iteration):
speaker_list = df_labels.columns.tolist()
df_precision = pd.DataFrame(columns=speaker_list,
index=cfg.audio.threshold)
df_roc = pd.DataFrame(columns=speaker_list, index=cfg.audio.threshold)
df_recall = pd.DataFrame(columns=speaker_list, index=cfg.audio.threshold)
df_far = pd.DataFrame(columns=speaker_list, index=cfg.audio.threshold)
df_frr = pd.DataFrame(columns=speaker_list, index=cfg.audio.threshold)
der = []
metric = DiarizationErrorRate(skip_overlap=True, collar=cfg.audio.collar)
groundtruth = load_rttm(cfg.audio.rttm_path)[cfg.audio.uri[iteration]]
for threshold in cfg.audio.threshold:
df_output = speaker_verification(
track_embedding=track_embedding,
df_labels=df_labels,
df_embeddings_verification=df_embeddings_verification,
threshold=threshold)
for speaker in speaker_list:
try:
df_precision.loc[threshold,
speaker] = precision_score(df_labels[speaker],
df_output[speaker],
average='binary')
except:
df_precision.loc[threshold, speaker] = 0
try:
df_recall.loc[threshold,
speaker] = recall_score(df_labels[speaker],
df_output[speaker],
average='binary')
except:
df_recall.loc[threshold, speaker] = 0
try:
df_roc.loc[threshold,
speaker] = roc_auc_score(df_labels[speaker],
df_output[speaker],
average=None)
except:
df_roc.loc[threshold, speaker] = 0
try:
far, frr = FAR_FRR(y_true=df_labels[speaker],
y_pred=df_output[speaker])
df_far.loc[threshold, speaker] = far
df_frr.loc[threshold, speaker] = frr
except:
df_far.loc[threshold, speaker] = 0
df_frr.loc[threshold, speaker] = 0
#der.append(metric(groundtruth, merge_frames(df_outputs=df_output, frame_list=frame_list, filename='try1_'+str(threshold))))
components = metric(groundtruth,
merge_frames(df_outputs=df_output,
frame_list=frame_list,
filename=cfg.audio.uri[iteration] +
'_' + str(threshold)),
detailed=True)
components = metric[:]
# print('False alarm: {}, Missed_Detection: {}, Confusion{}, Total {}'.format(DER['false alarm'], DER['missed detection'], DER['confusion'], DER['total']))
#if DER <= 1:
der.append(components)
#else:
# der.append(1.0)
return df_precision, df_recall, df_roc, df_far, df_frr, der
def main():
arguments = docopt(__doc__, version="Evaluation")
collar = float(arguments["--collar"])
skip_overlap = arguments["--skip-overlap"]
tolerance = float(arguments["--tolerance"])
# protocol
protocol_name = arguments["<database.task.protocol>"]
preprocessors = dict()
if arguments["overlap"]:
if skip_overlap:
msg = ("Option --skip-overlap is not supported "
"when evaluating overlapped speech detection.")
sys.exit(msg)
preprocessors = {"annotation": to_overlap}
protocol = get_protocol(protocol_name, preprocessors=preprocessors)
# subset (train, development, or test)
subset = arguments["--subset"]
if arguments["spotting"]:
hypothesis_json = arguments["<hypothesis.json>"]
with open(hypothesis_json, mode="r") as fp:
hypotheses = json.load(fp)
output_prefix = hypothesis_json[:-5]
latencies = [float(l) for l in arguments["--latency"]]
filters = arguments["--filter"]
if filters:
from sympy import sympify, lambdify, symbols
speech = symbols("speech")
filter_funcs = []
filter_funcs = [
lambdify([speech], sympify(expression))
for expression in filters
]
filter_func = lambda speech: any(~func(speech)
for func in filter_funcs)
else:
filter_func = None
spotting(
protocol,
subset,
latencies,
hypotheses,
output_prefix,
filter_func=filter_func,
)
sys.exit(0)
hypothesis_rttm = arguments["<hypothesis.rttm>"]
try:
hypotheses = load_rttm(hypothesis_rttm)
except FileNotFoundError:
msg = f"Could not find file {hypothesis_rttm}."
sys.exit(msg)
except:
msg = (f"Failed to load {hypothesis_rttm}, please check its format "
f"(only RTTM files are supported).")
sys.exit(msg)
if arguments["detection"]:
detection(protocol,
subset,
hypotheses,
collar=collar,
skip_overlap=skip_overlap)
if arguments["overlap"]:
detection(protocol,
subset,
hypotheses,
collar=collar,
skip_overlap=skip_overlap)
if arguments["segmentation"]:
segmentation(protocol, subset, hypotheses, tolerance=tolerance)
if arguments["diarization"]:
greedy = arguments["--greedy"]
diarization(
protocol,
subset,
hypotheses,
greedy=greedy,
collar=collar,
skip_overlap=skip_overlap,
)
if arguments["identification"]:
identification(protocol,
subset,
hypotheses,
collar=collar,
skip_overlap=skip_overlap)
def __init__(self, sad_rttm: Path = None):
self.sad_rttm = sad_rttm
self.sad_ = load_rttm(self.sad_rttm)
def main():
argparser = argparse.ArgumentParser()
argparser.add_argument('system',
type=str,
help='Path to the system\'s output')
argparser.add_argument('protocol',
type=str,
help='The protocol on which you want to evaluate'
'your system')
argparser.add_argument('subset',
type=str,
help='The subset of the database on which you want'
'to evaluate your system.\n'
'Choose between [train, test, development].\n'
'Default is test.')
argparser.add_argument('--vad',
action='store_false',
help='(OPTIONNAL) Enable if Evaluation a VAD system'
', this way only speech/non speech metrics '
'will be reported.')
args = argparser.parse_args()
# Create timeline for both reference & system
system = load_rttm(args.system)
#system_sils = system.get_timeline().gaps()
#system_spch = system.get_timeline()
# get Reference using Pyannote Protocol
protocol = get_protocol(args.protocol)
items = list(getattr(protocol, args.subset)())
reference = {item['uri']: item['annotation'] for item in items}
results = dict()
for uri in reference:
# preffix r: reference
# prefix s: system
r_annot = reference[uri]
# In case the uri was not evaluated, skip this one and go to the next
try:
s_annot = system[uri]
except:
continue
r_labels = {
lab: r_annot.label_timeline(lab)
for lab in r_annot.labels()
}
s_labels = {
lab: s_annot.label_timeline(lab)
for lab in s_annot.labels()
}
if not args.vad:
mapping = get_mapping(r_annot, s_annot)
else:
mapping = None
# accumulate results, reference side
dur = get_speech_duration(r_annot, uri)
print(uri)
print(dur)
correct, miss_spk, miss_speech = accumulate_reference(
r_labels, s_labels, mapping, dur)
# Both "correct" should be the same
_, FA_spk, FA_speech = accumulate_system(r_labels, s_labels, mapping,
dur)
results[uri] = (correct, FA_spk, FA_speech, miss_spk, miss_speech)
# evaluate each wav referenced in system:
# IF not vad:
# for each label (FEM, MAL, CHI, KCHI), measure the time
# in Correct/False alarm Speaker, False alarm Speech/Missed speaker/
# Missed Speech
write_evaluation(results, args.vad)