def test_seed_by_neighbors(self):
node = self.manager.get_node_by_dict(shp2)
edges = self.manager.query_neighbors([node])
self.assertEqual(2, len(edges))
graph = graph_from_edges(edges)
self.assertEqual(4,
graph.number_of_nodes(),
msg='Nodes: {}'.format(graph.nodes()))
self.assertTrue(graph.has_node_with_data(cd33_phosphorylated))
self.assertTrue(graph.has_node_with_data(cd33))
self.assertTrue(graph.has_node_with_data(syk))
self.assertTrue(graph.has_node_with_data(shp2))
self.assertEqual(3, graph.number_of_edges())
def test_seed_by_neighbors(self):
"""Test seeding a graph by neighbors of a list of nodes."""
node = self.manager.get_node_by_dsl(shp2)
edges = self.manager.query_neighbors([node])
self.assertEqual(2, len(edges))
graph = graph_from_edges(edges)
self.assertEqual(4,
graph.number_of_nodes(),
msg='Nodes: {}'.format(graph.nodes()))
self.assertIn(cd33_phosphorylated, graph)
self.assertIn(cd33, graph)
self.assertIn(syk, graph)
self.assertIn(shp2, graph)
self.assertEqual(3, graph.number_of_edges())
def test_seed_by_neighbors(self):
"""Test seeding a graph by neighbors of a list of nodes."""
shp2_model = self.manager.get_node_by_dsl(shp2)
self.assertIsNotNone(shp2_model)
edges = self.manager.query_neighbors([shp2_model])
self.assertEqual(2, len(edges))
graph = graph_from_edges(edges)
self.assertEqual(3, graph.number_of_edges())
self.assertEqual(4, graph.number_of_nodes())
self.assertIn(cd33_phosphorylated, graph)
self.assertIn(cd33, graph)
self.assertIn(syk, graph)
self.assertIn(shp2, graph)
self.assertEqual(3, graph.number_of_edges())
def test_seed_by_induction(self):
shp2_model = self.manager.get_node_by_dict(shp2)
syk_model = self.manager.get_node_by_dict(syk)
trem2_model = self.manager.get_node_by_dict(trem2)
edges = self.manager.query_induction(
[shp2_model, syk_model, trem2_model])
self.assertEqual(2, len(edges))
graph = graph_from_edges(edges)
self.assertEqual(3,
graph.number_of_nodes(),
msg='Nodes: {}'.format(graph.nodes()))
self.assertTrue(graph.has_node_with_data(trem2))
self.assertTrue(graph.has_node_with_data(syk))
self.assertTrue(graph.has_node_with_data(shp2))
self.assertEqual(2, graph.number_of_edges())
def test_seed_by_induction(self):
"""Test seeding by inducing over a list of nodes."""
shp2_model = self.manager.get_node_by_dsl(shp2)
syk_model = self.manager.get_node_by_dsl(syk)
trem2_model = self.manager.get_node_by_dsl(trem2)
edges = self.manager.query_induction(
[shp2_model, syk_model, trem2_model])
self.assertEqual(2, len(edges))
graph = graph_from_edges(edges)
self.assertEqual(3,
graph.number_of_nodes(),
msg='Nodes: {}'.format(graph.nodes()))
self.assertIn(trem2, graph)
self.assertIn(syk, graph)
self.assertIn(shp2, graph)
self.assertEqual(2, graph.number_of_edges())