variables_motor['LickPort_RostroCaudal_pos'] = 0
print('protracting zaber motor to avoid watering the camera below..')
variables_subject['motor_forwardposition'] = variables_motor[
'LickPort_RostroCaudal_pos']
variables_subject['motor_retractedposition'] = variables_motor[
'LickPort_RostroCaudal_pos'] + variables_subject['motor_retractiondistance']
#generate json files
with open(setupfile, 'w') as outfile:
json.dump(variables_setup, outfile)
with open(subjectfile, 'w') as outfile:
json.dump(variables_subject, outfile)
print('json files (re)generated')
my_bpod.softcode_handler_function = my_softcode_handler # Assign the SoftCode function
variables = variables_subject.copy()
variables.update(variables_setup)
print('Variables:', variables)
#print('subjectname for testing:',my_bpod.session.INFO_SUBJECT_NAME)
# ============== Final preparations ==============
# ----> Start the task
ignore_trial_num_in_a_row = 0
if variables['accumulate_reward']: # Always get a reward on the first trial
reward_L_accumulated = True
reward_R_accumulated = True
if lickportnum == 3:
reward_M_accumulated = True
display_stim_event.set()
print("present stimulus")
elif data == settings_obj.SC_START_OPEN_LOOP:
stimulus_game.stop_closed_loop_before()
print("start open loop")
elif data == settings_obj.SC_STOP_OPEN_LOOP:
stimulus_game.stop_open_loop()
print("stop open loop")
elif data == settings_obj.SC_END_PRESENT_STIM:
stimulus_game.stop_closed_loop_after()
still_show_event.set()
print("end present stim")
elif data == 9:
print("wheel not stopping")
bpod.softcode_handler_function = softcode_handler
#probability constructor
probability_obj = ProbabilityConstuctor(settings_obj)
#stimulus
# failsave for stimulus file
stimulus_game = Stimulus(settings_obj, rotary_encoder_module,
probability_obj.stim_side_dict)
sides_li = []
# times
times_punish_li = []
# list of toples (bool insist mode active, insist mode side)
insist_mode_li = []
# active rule list
active_rule_li = []
'LickPort_RostroCaudal_pos': pos_Forward_Backward,
}
return variables_motor
break
except zaber_serial.binaryserial.serial.SerialException:
print('can' 't access Zaber ' + str(zabertry_i))
time.sleep(.01)
variables_motor = read_motor_position(variables['comport_motor'])
variables['motor_forwardposition'] = variables_motor[
'LickPort_RostroCaudal_pos']
variables['motor_retractedposition'] = variables_motor[
'LickPort_RostroCaudal_pos'] + variables['motor_retractiondistance']
my_bpod.softcode_handler_function = my_softcode_handler
print('Variables:', variables)
#print('subjectname for testing:',my_bpod.session.INFO_SUBJECT_NAME)
# ----> Start the task
ignore_trial_num_in_a_row = 0
for blocki, (p_R, p_L) in enumerate(
zip(variables['reward_probabilities_R'],
variables['reward_probabilities_L'])):
rewarded_trial_num = 0
unrewarded_trial_num_in_a_row = 0
triali = -1
#for triali in range(variables['Trialnumber_in_block']): # Main loop
trialnum_now = np.random.normal(variables['Trialnumber_in_block'],