def test_raster_no_Polygon(self):
lon = np.random.random((10, 20))
lat = np.random.random((10, 20))
R = Raster(lon, lat)
with self.assertRaises(ValueError):
P = np.arange(10)
R._rasterize_single_polygon(P)
def test_raster_no_Polygon(self):
lon = np.random.random((10,20))
lat = np.random.random((10,20))
R = Raster(lon, lat)
with self.assertRaises(ValueError):
P = np.arange(10)
R._rasterize_single_polygon(P)
def test_raster_multiple_polygon(self): # this is quite slow!
lon = np.linspace(-180., 180., 361)
lat = np.linspace(-90., 90., 181)
LON, LAT = np.meshgrid(lon, lat)
#~ #~
# test a single polygon
poly = []
poly1 = [(-10., -10.), (-10., 20), (15., 0.), (0., -15.)]
poly.append(Polygon(1, poly1))
#~ #~
poly2 = [(-50., -80.), (-50., -70.), (-40., -70.), (-40., -75.)]
poly.append(Polygon(2, poly2))
#~ #~
R = Raster(LON, LAT)
R.rasterize_polygons(poly)
#~ #~
u = np.unique(R.mask[~R.mask.mask])
self.assertTrue(len(u) == 2)
self.assertTrue(1 in u)
self.assertTrue(2 in u)
def test_raster_multiple_polygon(self): # this is quite slow!
lon = np.linspace(-180., 180., 361)
lat = np.linspace(-90., 90., 181)
LON,LAT=np.meshgrid(lon, lat)
#~ #~
# test a single polygon
poly=[]
poly1 = [(-10.,-10.), (-10.,20), (15.,0.), (0.,-15.)]
poly.append(Polygon(1, poly1))
#~ #~
poly2 = [(-50.,-80.), (-50.,-70.), (-40.,-70.), (-40.,-75.)]
poly.append(Polygon(2, poly2))
#~ #~
R=Raster(LON,LAT)
R.rasterize_polygons(poly)
#~ #~
u = np.unique(R.mask[~R.mask.mask])
self.assertTrue(len(u)==2)
self.assertTrue(1 in u)
self.assertTrue(2 in u)
def test_raster_single_polygon(self):
lon = np.linspace(-180., 180., 361)
lat = np.linspace(-90., 90., 181)
LON,LAT=np.meshgrid(lon, lat)
# test a single polygon
poly = [(-10.,-10.), (-10.,20), (15.,0.), (0.,-25.)]
P = Polygon(5, poly)
R=Raster(LON,LAT)
R.mask = np.zeros(LON.shape)*np.nan
R._rasterize_single_polygon(P)
print np.unique(R.mask)
R.mask = np.ma.array(R.mask, mask=np.isnan(R.mask))
u = np.unique(R.mask[~R.mask.mask])
print R.mask
print u
self.assertTrue(len(u)==1)
self.assertTrue(5. in u)
def test_raster_single_polygon(self):
lon = np.linspace(-180., 180., 361)
lat = np.linspace(-90., 90., 181)
LON, LAT = np.meshgrid(lon, lat)
# test a single polygon
poly = [(-10., -10.), (-10., 20), (15., 0.), (0., -25.)]
P = Polygon(5, poly)
R = Raster(LON, LAT)
R.mask = np.zeros(LON.shape) * np.nan
R._rasterize_single_polygon(P)
print np.unique(R.mask)
R.mask = np.ma.array(R.mask, mask=np.isnan(R.mask))
u = np.unique(R.mask[~R.mask.mask])
print R.mask
print u
self.assertTrue(len(u) == 1)
self.assertTrue(5. in u)
def test_raster_wrong_latlon(self):
lon = np.random.random(10)
lat = np.random.random(10)
print lon.ndim
with self.assertRaises(ValueError):
R = Raster(lon, lat)
def test_raster_wrong_geometry(self):
lon = np.random.random((10, 20))
lat = np.random.random((11, 20))
with self.assertRaises(ValueError):
R = Raster(lon, lat)
def _import_regional_file(self, region_file, varname, targetgrid=None, logfile=None):
"""
check if the regional file can be either imported or if
regions are provided as vector data. In the latter case
the regions are rasterized and results are stored in a netCDF
file
Parameters
----------
region_file : str
name of file defining the region. This is either a netCDF
file which contains the mask as different integer values
or it is a *.reg file which contains the regions as
vector data.
varname : str
name of variable in netCDF file
targetgrid : str
name of targetgrid; either 't63grid' or the name of a file
with a valid geometry
Returns
-------
region_filename, region_file_varname
"""
if not os.path.exists(region_file):
raise ValueError('ERROR: region file is not existing: ' + region_file)
ext = os.path.splitext(region_file)[1]
if ext == '.nc':
# netCDF file was given. Try to read variable
if varname is None:
raise ValueError('ERROR: no variable name given!')
try:
tmp = Data(region_file, varname, read=True)
except:
raise ValueError('ERROR: the regional masking file can not be read!')
del tmp
# everything is fine
return region_file, varname
elif ext == '.reg':
# regions were given as vector files. Read it and
# rasterize the data and store results in a temporary
# file
import tempfile
if targetgrid is None:
raise ValueError('ERROR: targetgrid needs to be specified for vectorization of regions!')
if targetgrid == 't63grid':
ls_mask = get_T63_landseamask(True, area='global', mask_antarctica=False)
else:
ls_mask = get_generic_landseamask(True, area='global', target_grid=targetgrid,
mask_antarctica=False)
# temporary netCDF filename
region_file1 = tempfile.mktemp(prefix='region_mask_', suffix='.nc')
R = RegionParser(region_file) # read region vector data
M = Raster(ls_mask.lon, ls_mask.lat)
polylist = []
if logfile is not None:
logf = open(logfile, 'w')
else:
logf = None
id = 1
for k in R.regions.keys():
reg = R.regions[k]
polylist.append(pycmbsPolygon(id, zip(reg.lon, reg.lat)))
if logf is not None: # store mapping table
logf.write(k + '\t' + str(id) + '\n')
id += 1
M.rasterize_polygons(polylist)
if logf is not None:
logf.close()
# generate dummy output file
O = Data(None, None)
O.data = M.mask
O.lat = ls_mask.lat
O.lon = ls_mask.lon
varname = 'regions'
O.save(region_file1, varname=varname, format='nc', delete=True)
print('Regionfile was store in file: %s' % region_file1)
# check again that file is readable
try:
tmp = Data(region_file1, varname, read=True)
except:
print region_file1, varname
raise ValueError('ERROR: the generated region file is not readable!')
del tmp
return region_file1, varname
else:
raise ValueError('ERROR: unsupported file type')