def test_sbml_import(self):
## create sbml file for import
sbml_filename = self.mod.to_sbml()
assert os.path.isfile(sbml_filename)
## remove the existing copasi file
if os.path.isfile(self.copasi_file1):
os.remove(self.copasi_file1)
## import sbml
mod = model.ImportSBML(sbml_filename).model
self.assertTrue(type(mod) == model.Model)
def test_sbml_import_works(self):
"""
Test that time course works after import
:return:
"""
## create sbml file for import
sbml_filename = self.mod.to_sbml()
assert os.path.isfile(sbml_filename)
## remove the existing copasi file
if os.path.isfile(self.copasi_file1):
os.remove(self.copasi_file1)
## import sbml
mod = model.ImportSBML(sbml_filename).model
TC = tasks.TimeCourse(mod, end=100, intervals=100, step_size=1)
plotted_time_course = viz.PlotTimeCourse(TC, savefig=True)
self.assertEqual(
2,
len(
glob.glob(
os.path.join(plotted_time_course.results_directory, '*'))))