def __getattr__(self, name):
matches = [
scheme for scheme, keywords in cid_concepts[self.cid].items()
if name in keywords
]
if not matches:
msg = "Identifier '{}' not found for cid{}".format(name, self.cid)
raise AttributeError(msg)
elif len(matches) > 1:
# Should never happen, but just in case
msg = "Multiple schemes found for '{}' in cid{}".format(name, cid)
raise AssertionError(msg)
else:
scheme = matches[0]
concept = concepts[scheme][name]
# Almost always only one code per concepts name
if len(concept) == 1:
code, val = list(concept.items())[0]
else:
matches = [(code, val) for code, val in concept.items()
if self.cid in val[1]]
if len(matches) > 1:
# Should never happen, but check in case
msg = "{} had multiple code matches for cid{}".format(
name, cid)
raise AssertionError(msg)
code, val = matches[0]
return Code(value=code, meaning=val[0], scheme_designator=scheme)
def test_construction_args_optional(self):
version = 'v1.0'
c = Code(self._value, self._scheme_designator, self._meaning, version)
assert c.value == self._value
assert c.scheme_designator == self._scheme_designator
assert c.meaning == self._meaning
assert c.scheme_version == version
def __getattr__(self, name):
# for codes.X, X must be a CID or a scheme designator
if name.startswith("cid"):
if not self.scheme:
return _CID_Dict(int(name[3:]))
raise AttributeError("Cannot call cid selector on scheme dict")
if name in self._dict.keys():
# Return concepts limited only the specified scheme designator
return _CodesDict(scheme=name)
# If not already narrowed to a particular scheme, is an error
if not self.scheme:
msg = "'{}' not recognized as a CID or scheme designator"
raise AttributeError(msg.format(name))
# else try to find in this scheme
scheme = self.scheme
try:
val = self._dict[scheme][name]
except KeyError:
msg = "Unknown code name '{}' for scheme '{}'"
raise AttributeError(msg.format(name, scheme))
# val is like {code1: (meaning, cid_list}, code2: ...}
if len(val) > 1: # more than one code for this name
raise NotImplementedError("Need cid to disambiguate")
else:
code = list(val.keys())[0] # get first and only
meaning, cids = val[code]
return Code(value=code, meaning=meaning, scheme_designator=scheme)
def test_construction_kwargs(self):
c = Code(value=self._value,
scheme_designator=self._scheme_designator,
meaning=self._meaning)
assert c.value == self._value
assert c.scheme_designator == self._scheme_designator
assert c.meaning == self._meaning
assert c.scheme_version is None
def test_cid612(self):
assert codes.cid612.MonitoredAnesthesiaCareMAC == Code(
value='398239001',
scheme_designator='SCT',
meaning='Monitored Anesthesia Care (MAC)'
)
def test_cid405(self):
assert codes.cid405.MultiMediaCard == Code(
value='110035',
scheme_designator='DCM',
meaning='Multi-media Card'
)
def test_cid301(self):
assert codes.cid301.mgcm3 == Code(
value='mg/cm3',
scheme_designator='UCUM',
meaning='mg/cm^3'
)
def test_cid250(self):
assert codes.cid250.Positive == Code(
value='10828004',
scheme_designator='SCT',
meaning='Positive'
)
def test_sct_1(self):
assert codes.SCT._1SigmaLowerValueOfPopulation == Code(
value='371919006',
scheme_designator='SCT',
meaning='1 Sigma Lower Value of Populuation'
)
def test_dcm_2(self):
assert codes.DCM.ProcedureReported == Code(
value='121058',
scheme_designator='DCM',
meaning='Procedure Reported'
)
def test_dcm_1(self):
assert codes.DCM.Modality == Code(
value='121139',
scheme_designator='DCM',
meaning='Modality'
)
def test_cid1003(self):
assert codes.cid1003.LevelOfT11T12IntervertebralDisc == Code(
value='243918001',
scheme_designator='SCT',
meaning='Level of T11/T12 intervertebral disc'
)
def test_cid646(self):
assert codes.cid646.SPECTCTOfWholeBody == Code(
value='127902',
scheme_designator='DCM',
meaning='SPECT CT of Whole Body'
)
def test_cid643(self):
assert codes.cid643._6Hydroxydopamine == Code(
value='4624',
scheme_designator='PUBCHEM_CID',
meaning='6-Hydroxydopamine'
)
def test_cid630(self):
assert codes.cid630.LidocainePrilocaine == Code(
value='346553009',
scheme_designator='SCT',
meaning='Lidocaine + Prilocaine'
)
def test_contained(self):
c = Code('24028007', 'SCT', 'Right')
assert c in codes.cid244
def test_not_contained(self):
c = Code('130290', 'DCM', 'Median')
assert c not in codes.cid244
def test_cid3000(self):
assert codes.cid3000.OperatorNarrative == Code(
value='109111',
scheme_designator='DCM',
meaning='Operator\'s Narrative'
)
def test_dcm_3(self):
assert codes.DCM.ImagingStartDatetime == Code(
value='122712',
scheme_designator='DCM',
meaning='Imaging Start DateTime'
)
def test_cid3001_1(self):
assert codes.cid3001.Avr == Code(
value='2:65',
scheme_designator='MDC',
meaning='-aVR'
)
def test_sct_2(self):
assert codes.SCT.FindingSite == Code(
value='363698007',
scheme_designator='SCT',
meaning='Finding Site'
)
def test_cid3001_2(self):
assert codes.cid3001.NegativeLowRightScapulaLead == Code(
value='2:124',
scheme_designator='MDC',
meaning='negativ: low right scapula Lead'
)
def test_cid300(self):
assert codes.cid300.NickelCobaltChromium == Code(
value='261249004',
scheme_designator='SCT',
meaning='Nickel cobalt chromium'
)
def test_cid3107(self):
assert codes.cid3107._13Nitrogen == Code(
value='21576001',
scheme_designator='SCT',
meaning='^13^Nitrogen'
)
def test_cid402(self):
assert codes.cid402.DestinationRoleID == Code(
value='110152',
scheme_designator='DCM',
meaning='Destination Role ID'
)
def test_cid3111(self):
assert codes.cid3111.Tc99mTetrofosmin == Code(
value='404707004',
scheme_designator='SCT',
meaning='Tc-99m tetrofosmin'
)
def test_cid610(self):
assert codes.cid610.ReverseOsmosisPurifiedHclAcidifiedWater == Code(
value='127291',
scheme_designator='DCM',
meaning='Reverse osmosis purified, HCl acidified water'
)
def test_cid3263(self):
assert codes.cid3263._12LeadFromEASILeadsESASAIByDowerEASITransformation == Code(
value='10:11284',
scheme_designator='MDC',
meaning='12-lead from EASI leads (ES, AS, AI) by Dower/EASI transformation'
)
def test_cid622(self):
assert codes.cid622.NeuromuscularBlockingNMBNonDepolarizing == Code(
value='372790002',
scheme_designator='SCT',
meaning='NeuroMuscular Blocking (NMB) - non depolarizing'
)
def test_cid3335(self):
assert codes.cid3335.PWaveSecondDeflectionInPWave == Code(
value='10:320',
scheme_designator='MDC',
meaning='P\' wave (second deflection in P wave)'
)