def test_ule():
skip_if_no_data()
# Test loading of transfer data
train, valid, test, transfer = utlc.load_ndarray_dataset("ule",
normalize=True,
transfer=True)
assert train.shape[0] == transfer.shape[0]
def test_ule():
skip_if_no_data()
# Test loading of transfer data
train, valid, test, transfer = utlc.load_ndarray_dataset("ule",
normalize=True,
transfer=True)
assert train.shape[0] == transfer.shape[0]
def test_all_utlc():
skip_if_no_data()
for name in ['avicenna','harry','ule']: # not testing rita, because it requires a lot of memorz and is slow
print "Loading ", name
train, valid, test = utlc.load_ndarray_dataset(name, normalize=True)
print "dtype, max, min, mean, std"
print train.dtype, train.max(), train.min(), train.mean(), train.std()
assert isinstance(train, numpy.ndarray), "train is not an ndarray in %s dataset" % name
assert isinstance(valid, numpy.ndarray), "valid is not an ndarray in %s dataset" % name
assert isinstance(test, numpy.ndarray), "test is not an ndarray in %s dataset" % name
assert train.shape[1]==test.shape[1]==valid.shape[1], "shapes of datasets does not match for %s" % name
def test_all_utlc():
skip_if_no_data()
# not testing rita, because it requires a lot of memorz and is slow
for name in ['avicenna', 'harry', 'ule']:
print "Loading ", name
train, valid, test = utlc.load_ndarray_dataset(name, normalize=True)
print "dtype, max, min, mean, std"
print train.dtype, train.max(), train.min(), train.mean(), train.std()
assert isinstance(train, numpy.ndarray)
assert isinstance(valid, numpy.ndarray)
assert isinstance(test, numpy.ndarray)
assert train.shape[1] == test.shape[1] == valid.shape[1]
def test_all_utlc():
skip_if_no_data()
# not testing rita, because it requires a lot of memorz and is slow
for name in ['avicenna', 'harry', 'ule']:
print("Loading ", name)
train, valid, test = utlc.load_ndarray_dataset(name, normalize=True)
print("dtype, max, min, mean, std")
print(train.dtype, train.max(), train.min(), train.mean(), train.std())
assert isinstance(train, numpy.ndarray)
assert isinstance(valid, numpy.ndarray)
assert isinstance(test, numpy.ndarray)
assert train.shape[1] == test.shape[1] == valid.shape[1]
def load_data(conf):
"""
Loads a specified dataset according to the parameters in the dictionary
Parameters
----------
conf : WRITEME
Returns
-------
WRITEME
"""
logger.info('... loading dataset')
# Special case for sparse format
if conf.get('sparse', False):
expected = inspect.getargspec(load_sparse_dataset)[0][1:]
data = load_sparse_dataset(conf['dataset'], **subdict(conf, expected))
valid, test = data[1:3]
# Sparse TERRY data on LISA servers contains an extra null first row in
# valid and test subsets.
if conf['dataset'] == 'terry':
valid = valid[1:]
test = test[1:]
assert valid.shape[0] == test.shape[0] == 4096, \
'Sparse TERRY data loaded has wrong number of examples'
if len(data) == 3:
return [data[0], valid, test]
else:
return [data[0], valid, test, data[3]]
# Load as the usual ndarray
expected = inspect.getargspec(load_ndarray_dataset)[0][1:]
data = load_ndarray_dataset(conf['dataset'], **subdict(conf, expected))
# Special case for on-the-fly normalization
if conf.get('normalize_on_the_fly', False):
return data
# Allocate shared variables
def shared_dataset(data_x):
"""Function that loads the dataset into shared variables"""
if conf.get('normalize', True):
return sharedX(data_x, borrow=True)
else:
return theano.shared(theano._asarray(data_x), borrow=True)
return map(shared_dataset, data)
def load_data(conf):
"""
Loads a specified dataset according to the parameters in the dictionary
Parameters
----------
conf : WRITEME
Returns
-------
WRITEME
"""
print '... loading dataset'
# Special case for sparse format
if conf.get('sparse', False):
expected = inspect.getargspec(load_sparse_dataset)[0][1:]
data = load_sparse_dataset(conf['dataset'], **subdict(conf, expected))
valid, test = data[1:3]
# Sparse TERRY data on LISA servers contains an extra null first row in
# valid and test subsets.
if conf['dataset'] == 'terry':
valid = valid[1:]
test = test[1:]
assert valid.shape[0] == test.shape[0] == 4096, \
'Sparse TERRY data loaded has wrong number of examples'
if len(data) == 3:
return [data[0], valid, test]
else:
return [data[0], valid, test, data[3]]
# Load as the usual ndarray
expected = inspect.getargspec(load_ndarray_dataset)[0][1:]
data = load_ndarray_dataset(conf['dataset'], **subdict(conf, expected))
# Special case for on-the-fly normalization
if conf.get('normalize_on_the_fly', False):
return data
# Allocate shared variables
def shared_dataset(data_x):
"""Function that loads the dataset into shared variables"""
if conf.get('normalize', True):
return sharedX(data_x, borrow=True)
else:
return theano.shared(theano._asarray(data_x), borrow=True)
return map(shared_dataset, data)
def __init__(self, which_set, standardize):
train, valid, test = utlc.load_ndarray_dataset('avicenna')
if which_set == 'train':
self.X = train
elif which_set == 'valid':
self.X = valid
elif which_set == 'test':
self.X = test
else:
assert False
if standardize:
union = N.concatenate([train,valid,test],axis=0)
self.X -= union.mean(axis=0)
std = union.std(axis=0)
std[std < 1e-3] = 1e-3
self.X /= std
def __init__(self, which_set, standardize):
train, valid, test = utlc.load_ndarray_dataset('avicenna')
if which_set == 'train':
self.X = train
elif which_set == 'valid':
self.X = valid
elif which_set == 'test':
self.X = test
else:
assert False
if standardize:
union = N.concatenate([train, valid, test], axis=0)
# perform mean and std in float64 to avoid losing
# too much numerical precision
self.X -= union.mean(axis=0, dtype='float64')
std = union.std(axis=0, dtype='float64')
std[std < 1e-3] = 1e-3
self.X /= std
def __init__(self, which_set, standardize):
train, valid, test = utlc.load_ndarray_dataset('avicenna')
if which_set == 'train':
self.X = train
elif which_set == 'valid':
self.X = valid
elif which_set == 'test':
self.X = test
else:
assert False
if standardize:
union = N.concatenate([train, valid, test], axis=0)
# perform mean and std in float64 to avoid losing
# too much numerical precision
self.X -= union.mean(axis=0, dtype='float64')
std = union.std(axis=0, dtype='float64')
std[std < 1e-3] = 1e-3
self.X /= std