def __init__(self, **keywords): """ 2008-09-18 use pymodule.ProcessOptions 2008-01-21 ecotype_duplicate2tg_ecotypeid_table, snp_locus_table1 and snp_locus_table2 are useless """ from pymodule import ProcessOptions self.ad = ProcessOptions.process_function_arguments(keywords, self.option_default_dict, error_doc=self.__doc__, class_to_have_attr=self) QualityControl.__init__(self, debug=self.debug)
def load_dstruc(self): if self.debug: import pdb pdb.set_trace() QualityControl.load_dstruc(self) self.header1, self.strain_acc_list1, self.category_list1, self.data_matrix1 = read_data(self.input_fname1) self.header2, self.strain_acc_list2, self.category_list2, self.data_matrix2 = read_data(self.input_fname2) self.col_id2col_index1, self.col_id2col_index2, self.col_id12col_id2 = self.get_col_matching_dstruc(self.header1, self.header2) self.row_id2row_index1, self.row_id2row_index2, self.row_id12row_id2 = self.get_row_matching_dstruc(self.strain_acc_list1, self.category_list1, self.strain_acc_list2)
def __init__(self, **keywords):
"""
2008-09-18
use pymodule.ProcessOptions
2008-01-21
ecotype_duplicate2tg_ecotypeid_table, snp_locus_table1 and snp_locus_table2 are useless
"""
from pymodule import ProcessOptions
self.ad = ProcessOptions.process_function_arguments(
keywords,
self.option_default_dict,
error_doc=self.__doc__,
class_to_have_attr=self)
QualityControl.__init__(self, debug=self.debug)
def load_dstruc(self):
if self.debug:
import pdb
pdb.set_trace()
QualityControl.load_dstruc(self)
self.header1, self.strain_acc_list1, self.category_list1, self.data_matrix1 = read_data(
self.input_fname1)
self.header2, self.strain_acc_list2, self.category_list2, self.data_matrix2 = read_data(
self.input_fname2)
self.col_id2col_index1, self.col_id2col_index2, self.col_id12col_id2 = self.get_col_matching_dstruc(
self.header1, self.header2)
self.row_id2row_index1, self.row_id2row_index2, self.row_id12row_id2 = self.get_row_matching_dstruc(
self.strain_acc_list1, self.category_list1, self.strain_acc_list2)