def testLoadAlnMappingDict(self):
cmd.fab('ACDIKLMNP', 'm2')
cmd.fab('GHIKPQRS', 'm3')
from pymol.seqalign import load_aln_multi
load_aln_multi(self.datafile('alignment.aln'), 'aln', mapping={
'seq2': 'm2',
'seq3': 'm3',
})
self.assertEqual(cmd.count_atoms('guide & aln & m2'), 2)
self.assertEqual(cmd.count_atoms('guide & aln & m3'), 2)
def testLoadAlnMappingStr(self):
cmd.fab('ACDEFGHIKLMNPQRS', 'm1')
cmd.fab('ACDIKLMNP', 'm2')
from pymol.seqalign import load_aln_multi
load_aln_multi(self.datafile('alignment.aln'), 'aln', mapping=
'seq1 m1 '
'seq2 m2 '
)
self.assertEqual(cmd.count_atoms('guide & aln & m1'), 7)
self.assertEqual(cmd.count_atoms('guide & aln & m2'), 7)
def run():
mapping = dict((rec_id, combobox.currentText())
for (rec_id, combobox) in comboboxes.items())
seqalign.load_aln_multi(filename, mapping=mapping, _self=_self)
form._dialog.close()
def run():
mapping = dict((rec_id, combobox.currentText())
for (rec_id, combobox) in comboboxes.items())
seqalign.load_aln_multi(filename, mapping=mapping, _self=_self)
form._dialog.close()