def status(self):
"""
Get job status from HPC.
Returns
-------
status : (str)
Job status. Possible status are 'PENDING','RUNNING','NOT IN QUEUE'.
"""
hpc = HPCInterface()
stdout, stderr = hpc.qstat(printout=False)
queue = stdout.splitlines()
job_lines = grep_list(self.name, queue)
if job_lines == []:
status = 'NOT IN QUEUE'
elif len(job_lines) > 1:
raise ValueError(
f'More than one job named "{self.name}" has been found in queue:\n{stdout}'
)
else:
job_line = job_lines[0].split()
status = job_line[4]
if status == 'PD':
status = 'PENDING'
if status == 'R':
status = 'RUNNING'
if status == 'CG':
status = 'COMPLETED'
return status
def job_queue(self):
"""
Print job queue from HPC on screen
Returns
-------
stdout : (str)
Output.
stderr : (str)
Error.
"""
hpc = HPCInterface()
stdout, stderr = hpc.qstat()
return stdout, stderr
def queue(self,stdouts=False):
"""
Display queue from HPC. If stdouts is True returns out and err strings.
Returns
-------
stdout : (str)
Output.
stderr : (str)
Error.
"""
hpc = HPCInterface()
stdout,stderr = hpc.qstat()
if stdouts:
return stdout,stderr
else:
return
def job_id(self):
"""Get job ID from the queue on HPC"""
hpc = HPCInterface()
stdout, stderr = hpc.qstat(printout=False)
queue = stdout.splitlines()
job_lines = grep_list(self.name, queue)
if job_lines == []:
raise ValueError(
f'Job named "{self.name}" is not currently running or pending')
elif len(job_lines) > 1:
raise ValueError(
f'More than one job named "{self.name}" has been found in queue:\n{stdout}'
)
else:
job_line = job_lines[0].split()
job_id = job_line[0]
return job_id