def test_resource_query(self):
res_objs = [
(IonObject(RT.InstrumentDevice, name="ID1", lcstate=LCS.DEPLOYED), ),
(IonObject(RT.InstrumentDevice, name="ID2", lcstate=LCS.INTEGRATED), ),
(IonObject(RT.InstrumentSite, name="IS1", lcstate=LCS.INTEGRATED), ),
(IonObject(RT.PlatformDevice, name="PD1"), ),
(IonObject(RT.PlatformSite, name="PS1"), ),
(IonObject(RT.PlatformSite, name="PS0"), ),
(IonObject(RT.Observatory, name="OS1"), ),
(IonObject(RT.DataProduct, name="DP1"), ),
(IonObject(RT.DataProduct, name="DP2"), ),
]
assocs = [
("ID1", PRED.hasOutputProduct, "DP1"),
("ID1", PRED.hasOutputProduct, "DP2"),
("PD1", PRED.hasDevice, "ID1"),
("OS1", PRED.hasSite, "PS0"),
("PS0", PRED.hasSite, "PS1"),
("PS1", PRED.hasSite, "IS1"),
("PS1", PRED.hasDevice, "PD1"),
("IS1", PRED.hasDevice, "ID1"),
]
res_by_name = {}
for res_entry in res_objs:
res_obj = res_entry[0]
res_name = res_obj.name
res_obj.alt_ids.append("TEST:%s" % res_name)
actor_id = res_by_name[res_entry[1]] if len(res_entry) > 1 else None
rid, _ = self.rr.create(res_obj, actor_id=actor_id)
res_by_name[res_name] = rid
for assoc in assocs:
sname, p, oname = assoc
s, o = res_by_name[sname], res_by_name[oname]
self.rr.create_association(s, p, o)
# --- Simple resource filters
rq = ResourceQuery()
rq.set_filter(rq.filter_type(RT.InstrumentDevice))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
rq.set_filter(rq.filter_type([RT.InstrumentDevice, RT.PlatformDevice]))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 3)
rq = ResourceQuery()
rq.set_filter(rq.filter_type([RT.InstrumentDevice, RT.PlatformDevice]),
rq.filter_name("ID1"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
rq = ResourceQuery()
rq.set_filter(rq.filter_type([RT.InstrumentDevice, RT.PlatformDevice]),
rq.filter_name(["ID1", "PD1"]))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
rq.set_filter(rq.filter_type([RT.InstrumentDevice, RT.PlatformDevice]),
rq.filter_name("ID", cmpop=ResourceQuery.TXT_CONTAINS))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
# --- Association query
rq = ResourceQuery()
rq.set_filter(rq.filter_associated_with_object(res_by_name["ID1"]))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
# --- Association queries with a target filter
rq = ResourceQuery()
target_filter = rq.eq(rq.RA_NAME, "DP1")
rq.set_filter(rq.filter_type([RT.InstrumentDevice, RT.PlatformDevice]),
rq.filter_associated_with_subject(predicate=PRED.hasOutputProduct,
target_filter=target_filter))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
self.assertEquals(res_obj[0].name, "ID1")
rq = ResourceQuery()
target_filter = rq.eq(rq.RA_NAME, "DP1")
rq.set_filter(rq.filter_type(RT.InstrumentDevice),
rq.filter_associated_with_subject(predicate=[PRED.hasOutputProduct, PRED.hasSource],
target_filter=target_filter))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
self.assertEquals(res_obj[0].name, "ID1")
rq = ResourceQuery()
target_filter = rq.eq(rq.RA_NAME, "DP1")
rq.set_filter(rq.filter_type(RT.InstrumentDevice),
rq.filter_associated_with_subject(predicate=PRED.hasOutputProduct,
object_type=RT.DataProduct,
target_filter=target_filter))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
self.assertEquals(res_obj[0].name, "ID1")
rq = ResourceQuery()
target_filter = rq.and_(rq.eq(rq.RA_NAME, "DP1"),
rq.eq(rq.ATT_TYPE, RT.DataProduct))
rq.set_filter(rq.filter_type(RT.InstrumentDevice),
rq.filter_associated_with_subject(predicate=PRED.hasOutputProduct,
target_filter=target_filter))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
self.assertEquals(res_obj[0].name, "ID1")
#rq = ResourceQuery()
#rq.set_filter(rq.filter_by_association(res_by_name["ID1"], direction="SO"))
#res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
# --- Multi-hop associations
rq = ResourceQuery()
# This will find InstrumentDevice child of PlatformDevice
rq.set_filter(rq.filter_by_association(res_by_name["PS1"], predicate=[PRED.hasDevice, PRED.hasDevice], direction="OO"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
#print "\n".join("%s %s %s" % (ro._id, ro.type_, ro.name) for ro in res_obj)
self.assertEquals(len(res_obj), 1)
self.assertEquals(res_obj[0].name, "ID1")
rq = ResourceQuery()
# This will find PlatformDevice for site PLUS InstrumentDevice child of PlatformDevice
rq.set_filter(rq.filter_by_association(res_by_name["PS1"], predicate=[PRED.hasDevice, PRED.hasDevice], direction="OO"),
rq.filter_by_association(res_by_name["PS1"], predicate=[PRED.hasDevice], direction="O"),
or_filters=True)
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
self.assertIn(res_obj[0].name, {"ID1", "PD1"})
self.assertIn(res_obj[1].name, {"ID1", "PD1"})
rq = ResourceQuery()
rq.set_filter(rq.filter_by_association(res_by_name["OS1"], predicate=[PRED.hasSite], direction="O"),
rq.filter_by_association(res_by_name["OS1"], predicate=[PRED.hasSite,PRED.hasSite], direction="OO"),
rq.filter_by_association(res_by_name["OS1"], predicate=[PRED.hasSite,PRED.hasSite,PRED.hasSite], direction="OOO"),
or_filters=True)
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 3)
self.assertIn(res_obj[0].name, {"PS0", "PS1", "IS1"})
self.assertIn(res_obj[1].name, {"PS0", "PS1", "IS1"})
self.assertIn(res_obj[2].name, {"PS0", "PS1", "IS1"})
# --- Association descendants (recursively)
rq = ResourceQuery()
rq.set_filter(rq.filter_object_descendants(res_by_name["OS1"], predicate=[PRED.hasSite]))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 3)
rq = ResourceQuery()
rq.set_filter(rq.filter_object_descendants(res_by_name["OS1"], predicate=[PRED.hasSite], max_depth=2))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertGreaterEqual(len(res_obj), 9)
# --- Parameterized queries
query_params = dict(restype=RT.InstrumentDevice)
rq = ResourceQuery()
rq.set_filter(rq.filter_type("$(restype)"))
rq.set_query_parameters(query_params)
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
# --- Association query
aq = AssociationQuery()
aq.set_filter(aq.filter_subject(res_by_name["ID1"]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 2)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject([res_by_name["ID1"], res_by_name["PS1"]]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 4)
aq = AssociationQuery()
aq.set_filter(aq.filter_object([res_by_name["DP1"], res_by_name["DP2"]]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 2)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject([res_by_name["ID1"], res_by_name["PS1"]]),
aq.filter_predicate(PRED.hasOutputProduct))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 2)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject(res_by_name["ID1"]),
aq.filter_predicate(PRED.hasOutputProduct),
aq.filter_object(res_by_name["DP1"]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 1)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject_type(RT.InstrumentDevice))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 2)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject_type([RT.Observatory, RT.PlatformSite]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 4)
aq = AssociationQuery()
aq.set_filter(aq.filter_object_type(RT.DataProduct))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 2)
aq = AssociationQuery()
aq.set_filter(aq.filter_object_type([RT.PlatformSite, RT.InstrumentSite]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 3)
aq = AssociationQuery()
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 8)
# --- Association descendants (recursively)
aq = AssociationQuery()
aq.set_filter(aq.filter_object_descendants(res_by_name["OS1"], predicate=[PRED.hasSite]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 3)
#print assoc_objs
#from pyon.util.breakpoint import breakpoint
#breakpoint()
# --- Clean up
self.rr.rr_store.delete_mult(res_by_name.values())
def test_resource_query(self):
res_objs = [
(IonObject(RT.TestInstrument, name="ID1", lcstate=LCS.DEPLOYED, keywords=["K1", "K2"]), ),
(IonObject(RT.TestInstrument, name="ID2", lcstate=LCS.INTEGRATED), ),
(IonObject(RT.TestSite, name="IS1", lcstate=LCS.INTEGRATED), ),
(IonObject(RT.TestPlatform, name="PD1", keywords=["K", "K1", "K3"]), ),
(IonObject(RT.TestSite, name="PS1", alt_ids=["NS1:ID11", "NS2:ID21"]), ),
(IonObject(RT.TestSite, name="PS0", alt_ids=["NS1:ID12", "NS3:ID22"]), ),
(IonObject(RT.TestSite, name="OS1", alt_ids=["_:IDX", "NS2:ID21"]), ),
(IonObject(RT.TestDataset, name="DP1"), ),
(IonObject(RT.TestDataset, name="DP2"), ),
(IonObject(RT.ActorIdentity, name="user1", details=IonObject(OT.UserIdentityDetails,
contact=IonObject(OT.ContactInformation, individual_names_given="John",
individual_name_family="Doe", email="*****@*****.**"))), ),
(IonObject(RT.ActorIdentity, name="user2", details=IonObject(OT.UserIdentityDetails,
contact=IonObject(OT.ContactInformation, individual_names_given="Jane",
individual_name_family="Foo", email="*****@*****.**"))), ),
]
assocs = [
("ID1", PRED.hasTestDataset, "DP1"),
("ID1", PRED.hasTestDataset, "DP2"),
("PD1", PRED.hasTestDevice, "ID1"),
("OS1", PRED.hasTestSite, "PS0"),
("PS0", PRED.hasTestSite, "PS1"),
("PS1", PRED.hasTestSite, "IS1"),
("PS1", PRED.hasTestDevice, "PD1"),
("IS1", PRED.hasTestDevice, "ID1"),
]
res_by_name = {}
for res_entry in res_objs:
res_obj = res_entry[0]
res_name = res_obj.name
res_obj.alt_ids.append("TEST:%s" % res_name)
actor_id = res_by_name[res_entry[1]] if len(res_entry) > 1 else None
rid, _ = self.rr.create(res_obj, actor_id=actor_id)
res_by_name[res_name] = rid
for assoc in assocs:
sname, p, oname = assoc
s, o = res_by_name[sname], res_by_name[oname]
self.rr.create_association(s, p, o)
# TEST: Simple resource filters
rq = ResourceQuery()
rq.set_filter(rq.filter_type(RT.TestInstrument))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
rq.set_filter(rq.filter_type([RT.TestInstrument, RT.TestPlatform]))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 3)
rq = ResourceQuery()
rq.set_filter(rq.filter_type([RT.TestInstrument, RT.TestPlatform]),
rq.filter_name("ID1"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
rq = ResourceQuery()
rq.set_filter(rq.filter_type([RT.TestInstrument, RT.TestPlatform]),
rq.filter_name(["ID1", "PD1"]))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
rq.set_filter(rq.filter_type([RT.TestInstrument, RT.TestPlatform]),
rq.filter_name("ID", cmpop=ResourceQuery.TXT_CONTAINS))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
# TEST: Advanced resource filters
rq = ResourceQuery()
rq.set_filter(rq.filter_keyword("K1"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
rq.set_filter(rq.filter_keyword("K"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
rq = ResourceQuery()
rq.set_filter(rq.filter_keyword(""))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 0)
rq = ResourceQuery()
rq.set_filter(rq.filter_keyword(["K1", "K3"]))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
rq = ResourceQuery()
rq.set_filter(rq.filter_altid("NS1", "ID11"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
rq = ResourceQuery()
rq.set_filter(rq.filter_altid("NS2", "ID21"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
rq.set_filter(rq.filter_altid("NS2"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
rq.set_filter(rq.filter_altid(None))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertGreaterEqual(len(res_obj), 3)
rq = ResourceQuery()
rq.set_filter(rq.filter_altid(["NS1", "NS2"], "ID21"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
# TEST: Full-text search
rq = ResourceQuery()
rq.set_filter(rq.filter_matchany("DP"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
rq.set_filter(rq.filter_type(RT.ActorIdentity),
rq.filter_matchany("user1"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
rq = ResourceQuery()
rq.set_filter(rq.filter_type(RT.ActorIdentity),
rq.filter_matchany("John"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
rq = ResourceQuery()
rq.set_filter(rq.filter_type(RT.ActorIdentity),
rq.filter_matchany("JoHn", rq.TXT_CONTAINS))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 0)
rq = ResourceQuery()
rq.set_filter(rq.filter_type(RT.ActorIdentity),
rq.filter_matchany("foo.com"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
rq.set_filter(rq.filter_type(RT.ActorIdentity),
rq.filter_matchany("DEPLOYED"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 0)
# --- Query with associations
rq = ResourceQuery()
rq.set_filter(rq.filter_associated_from_subject(res_by_name["ID1"]))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
# --- Query with associations with a target filter
rq = ResourceQuery()
target_filter = rq.eq(rq.RA_NAME, "DP1")
rq.set_filter(rq.filter_type([RT.TestInstrument, RT.TestPlatform]),
rq.filter_associated_from_object(predicate=PRED.hasTestDataset,
target_filter=target_filter))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
self.assertEquals(res_obj[0].name, "ID1")
rq = ResourceQuery()
target_filter = rq.eq(rq.RA_NAME, "DP1")
rq.set_filter(rq.filter_type(RT.TestInstrument),
rq.filter_associated_from_object(predicate=[PRED.hasTestDataset, PRED.hasTestSource],
target_filter=target_filter))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
self.assertEquals(res_obj[0].name, "ID1")
rq = ResourceQuery()
target_filter = rq.eq(rq.RA_NAME, "DP1")
rq.set_filter(rq.filter_type(RT.TestInstrument),
rq.filter_associated_from_object(predicate=PRED.hasTestDataset,
object_type=RT.TestDataset,
target_filter=target_filter))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
self.assertEquals(res_obj[0].name, "ID1")
rq = ResourceQuery()
target_filter = rq.and_(rq.eq(rq.RA_NAME, "DP1"),
rq.eq(rq.ATT_TYPE, RT.TestDataset))
rq.set_filter(rq.filter_type(RT.TestInstrument),
rq.filter_associated_from_object(predicate=PRED.hasTestDataset,
target_filter=target_filter))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
self.assertEquals(res_obj[0].name, "ID1")
#rq = ResourceQuery()
#rq.set_filter(rq.filter_by_association(res_by_name["ID1"], direction="SO"))
#res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
# --- Multi-hop associations
rq = ResourceQuery()
# This will find TestInstrument child of TestPlatform
rq.set_filter(rq.filter_by_association(res_by_name["PS1"], predicate=[PRED.hasTestDevice, PRED.hasTestDevice], direction="OO"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
#print "\n".join("%s %s %s" % (ro._id, ro.type_, ro.name) for ro in res_obj)
self.assertEquals(len(res_obj), 1)
self.assertEquals(res_obj[0].name, "ID1")
rq = ResourceQuery()
# This will find TestPlatform for site PLUS TestInstrument child of TestPlatform
rq.set_filter(rq.filter_by_association(res_by_name["PS1"], predicate=[PRED.hasTestDevice, PRED.hasTestDevice], direction="OO"),
rq.filter_by_association(res_by_name["PS1"], predicate=[PRED.hasTestDevice], direction="O"),
or_filters=True)
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
self.assertIn(res_obj[0].name, {"ID1", "PD1"})
self.assertIn(res_obj[1].name, {"ID1", "PD1"})
rq = ResourceQuery()
rq.set_filter(rq.filter_by_association(res_by_name["OS1"], predicate=[PRED.hasTestSite], direction="O"),
rq.filter_by_association(res_by_name["OS1"], predicate=[PRED.hasTestSite,PRED.hasTestSite], direction="OO"),
rq.filter_by_association(res_by_name["OS1"], predicate=[PRED.hasTestSite,PRED.hasTestSite,PRED.hasTestSite], direction="OOO"),
or_filters=True)
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 3)
self.assertIn(res_obj[0].name, {"PS0", "PS1", "IS1"})
self.assertIn(res_obj[1].name, {"PS0", "PS1", "IS1"})
self.assertIn(res_obj[2].name, {"PS0", "PS1", "IS1"})
# --- Association descendants (recursively)
rq = ResourceQuery()
rq.set_filter(rq.filter_object_descendants(res_by_name["OS1"], predicate=[PRED.hasTestSite]))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 3)
rq = ResourceQuery()
rq.set_filter(rq.filter_object_descendants(res_by_name["OS1"], predicate=[PRED.hasTestSite], max_depth=2))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertGreaterEqual(len(res_obj), 9)
# --- Parameterized queries
query_params = dict(restype=RT.TestInstrument)
rq = ResourceQuery()
rq.set_filter(rq.filter_type("$(restype)"))
rq.set_query_parameters(query_params)
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
# --- Association query
aq = AssociationQuery()
aq.set_filter(aq.filter_subject(res_by_name["ID1"]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 2)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject([res_by_name["ID1"], res_by_name["PS1"]]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 4)
aq = AssociationQuery()
aq.set_filter(aq.filter_object([res_by_name["DP1"], res_by_name["DP2"]]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 2)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject([res_by_name["ID1"], res_by_name["PS1"]]),
aq.filter_predicate(PRED.hasTestDataset))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 2)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject(res_by_name["ID1"]),
aq.filter_predicate(PRED.hasTestDataset),
aq.filter_object(res_by_name["DP1"]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 1)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject_type(RT.TestInstrument))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 2)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject_type([RT.TestSite, RT.TestSite]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 5)
aq = AssociationQuery()
aq.set_filter(aq.filter_object_type(RT.TestDataset))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 2)
aq = AssociationQuery()
aq.set_filter(aq.filter_object_type([RT.TestSite, RT.TestSite]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 3)
aq = AssociationQuery()
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 8)
# --- Association descendants (recursively)
aq = AssociationQuery()
aq.set_filter(aq.filter_object_descendants(res_by_name["OS1"], predicate=[PRED.hasTestSite]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 3)
#print assoc_objs
#from pyon.util.breakpoint import breakpoint
#breakpoint()
# --- Clean up
self.rr.rr_store.delete_mult(res_by_name.values())
def test_resource_query(self):
res_objs = [
(IonObject(RT.TestInstrument, name="ID1", lcstate=LCS.DEPLOYED, keywords=["K1", "K2"]), ),
(IonObject(RT.TestInstrument, name="ID2", lcstate=LCS.INTEGRATED), ),
(IonObject(RT.TestSite, name="IS1", lcstate=LCS.INTEGRATED), ),
(IonObject(RT.TestPlatform, name="PD1", keywords=["K", "K1", "K3"]), ),
(IonObject(RT.TestSite, name="PS1", alt_ids=["NS1:ID11", "NS2:ID21"]), ),
(IonObject(RT.TestSite, name="PS0", alt_ids=["NS1:ID12", "NS3:ID22"]), ),
(IonObject(RT.TestSite, name="OS1", alt_ids=["_:IDX", "NS2:ID21"]), ),
(IonObject(RT.TestDataset, name="DP1"), ),
(IonObject(RT.TestDataset, name="DP2"), ),
(IonObject(RT.ActorIdentity, name="user1", details=IonObject(OT.UserIdentityDetails,
contact=IonObject(OT.ContactInformation, individual_names_given="John",
individual_name_family="Doe", email="*****@*****.**"))), ),
(IonObject(RT.ActorIdentity, name="user2", details=IonObject(OT.UserIdentityDetails,
contact=IonObject(OT.ContactInformation, individual_names_given="Jane",
individual_name_family="Foo", email="*****@*****.**"))), ),
]
assocs = [
("ID1", PRED.hasTestDataset, "DP1"),
("ID1", PRED.hasTestDataset, "DP2"),
("PD1", PRED.hasTestDevice, "ID1"),
("OS1", PRED.hasTestSite, "PS0"),
("PS0", PRED.hasTestSite, "PS1"),
("PS1", PRED.hasTestSite, "IS1"),
("PS1", PRED.hasTestDevice, "PD1"),
("IS1", PRED.hasTestDevice, "ID1"),
]
res_by_name = {}
for res_entry in res_objs:
res_obj = res_entry[0]
res_name = res_obj.name
res_obj.alt_ids.append("TEST:%s" % res_name)
actor_id = res_by_name[res_entry[1]] if len(res_entry) > 1 else None
rid, _ = self.rr.create(res_obj, actor_id=actor_id)
res_by_name[res_name] = rid
for assoc in assocs:
sname, p, oname = assoc
s, o = res_by_name[sname], res_by_name[oname]
self.rr.create_association(s, p, o)
# TEST: Simple resource filters
rq = ResourceQuery()
rq.set_filter(rq.filter_type(RT.TestInstrument))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
rq.set_filter(rq.filter_type([RT.TestInstrument, RT.TestPlatform]))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 3)
rq = ResourceQuery()
rq.set_filter(rq.filter_type([RT.TestInstrument, RT.TestPlatform]),
rq.filter_name("ID1"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
rq = ResourceQuery()
rq.set_filter(rq.filter_type([RT.TestInstrument, RT.TestPlatform]),
rq.filter_name(["ID1", "PD1"]))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
rq.set_filter(rq.filter_type([RT.TestInstrument, RT.TestPlatform]),
rq.filter_name("ID", cmpop=ResourceQuery.TXT_CONTAINS))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
# TEST: Advanced resource filters
rq = ResourceQuery()
rq.set_filter(rq.filter_keyword("K1"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
rq.set_filter(rq.filter_keyword("K"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
rq = ResourceQuery()
rq.set_filter(rq.filter_keyword(""))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 0)
rq = ResourceQuery()
rq.set_filter(rq.filter_keyword(["K1", "K3"]))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
rq = ResourceQuery()
rq.set_filter(rq.filter_altid("NS1", "ID11"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
rq = ResourceQuery()
rq.set_filter(rq.filter_altid("NS2", "ID21"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
rq.set_filter(rq.filter_altid("NS2"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
rq.set_filter(rq.filter_altid(None))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertGreaterEqual(len(res_obj), 3)
rq = ResourceQuery()
rq.set_filter(rq.filter_altid(["NS1", "NS2"], "ID21"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
# TEST: Full-text search
rq = ResourceQuery()
rq.set_filter(rq.filter_matchany("DP"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
rq.set_filter(rq.filter_type(RT.ActorIdentity),
rq.filter_matchany("user1"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
rq = ResourceQuery()
rq.set_filter(rq.filter_type(RT.ActorIdentity),
rq.filter_matchany("John"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
rq = ResourceQuery()
rq.set_filter(rq.filter_type(RT.ActorIdentity),
rq.filter_matchany("JoHn", rq.TXT_CONTAINS))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 0)
rq = ResourceQuery()
rq.set_filter(rq.filter_type(RT.ActorIdentity),
rq.filter_matchany("foo.com"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
rq.set_filter(rq.filter_type(RT.ActorIdentity),
rq.filter_matchany("DEPLOYED"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 0)
# --- Query with associations
rq = ResourceQuery()
rq.set_filter(rq.filter_associated_from_subject(res_by_name["ID1"]))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
# --- Query with associations with a target filter
rq = ResourceQuery()
target_filter = rq.eq(rq.RA_NAME, "DP1")
rq.set_filter(rq.filter_type([RT.TestInstrument, RT.TestPlatform]),
rq.filter_associated_from_object(predicate=PRED.hasTestDataset,
target_filter=target_filter))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
self.assertEquals(res_obj[0].name, "ID1")
rq = ResourceQuery()
target_filter = rq.eq(rq.RA_NAME, "DP1")
rq.set_filter(rq.filter_type(RT.TestInstrument),
rq.filter_associated_from_object(predicate=[PRED.hasTestDataset, PRED.hasTestSource],
target_filter=target_filter))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
self.assertEquals(res_obj[0].name, "ID1")
rq = ResourceQuery()
target_filter = rq.eq(rq.RA_NAME, "DP1")
rq.set_filter(rq.filter_type(RT.TestInstrument),
rq.filter_associated_from_object(predicate=PRED.hasTestDataset,
object_type=RT.TestDataset,
target_filter=target_filter))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
self.assertEquals(res_obj[0].name, "ID1")
rq = ResourceQuery()
target_filter = rq.and_(rq.eq(rq.RA_NAME, "DP1"),
rq.eq(rq.ATT_TYPE, RT.TestDataset))
rq.set_filter(rq.filter_type(RT.TestInstrument),
rq.filter_associated_from_object(predicate=PRED.hasTestDataset,
target_filter=target_filter))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
self.assertEquals(res_obj[0].name, "ID1")
#rq = ResourceQuery()
#rq.set_filter(rq.filter_by_association(res_by_name["ID1"], direction="SO"))
#res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
# --- Multi-hop associations
rq = ResourceQuery()
# This will find TestInstrument child of TestPlatform
rq.set_filter(rq.filter_by_association(res_by_name["PS1"], predicate=[PRED.hasTestDevice, PRED.hasTestDevice], direction="OO"))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
#print "\n".join("%s %s %s" % (ro._id, ro.type_, ro.name) for ro in res_obj)
self.assertEquals(len(res_obj), 1)
self.assertEquals(res_obj[0].name, "ID1")
rq = ResourceQuery()
# This will find TestPlatform for site PLUS TestInstrument child of TestPlatform
rq.set_filter(rq.filter_by_association(res_by_name["PS1"], predicate=[PRED.hasTestDevice, PRED.hasTestDevice], direction="OO"),
rq.filter_by_association(res_by_name["PS1"], predicate=[PRED.hasTestDevice], direction="O"),
or_filters=True)
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
self.assertIn(res_obj[0].name, {"ID1", "PD1"})
self.assertIn(res_obj[1].name, {"ID1", "PD1"})
rq = ResourceQuery()
rq.set_filter(rq.filter_by_association(res_by_name["OS1"], predicate=[PRED.hasTestSite], direction="O"),
rq.filter_by_association(res_by_name["OS1"], predicate=[PRED.hasTestSite,PRED.hasTestSite], direction="OO"),
rq.filter_by_association(res_by_name["OS1"], predicate=[PRED.hasTestSite,PRED.hasTestSite,PRED.hasTestSite], direction="OOO"),
or_filters=True)
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 3)
self.assertIn(res_obj[0].name, {"PS0", "PS1", "IS1"})
self.assertIn(res_obj[1].name, {"PS0", "PS1", "IS1"})
self.assertIn(res_obj[2].name, {"PS0", "PS1", "IS1"})
# --- Association descendants (recursively)
rq = ResourceQuery()
rq.set_filter(rq.filter_object_descendants(res_by_name["OS1"], predicate=[PRED.hasTestSite]))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 3)
rq = ResourceQuery()
rq.set_filter(rq.filter_object_descendants(res_by_name["OS1"], predicate=[PRED.hasTestSite], max_depth=2))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
rq = ResourceQuery()
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertGreaterEqual(len(res_obj), 9)
# --- Parameterized queries
query_params = dict(restype=RT.TestInstrument)
rq = ResourceQuery()
rq.set_filter(rq.filter_type("$(restype)"))
rq.set_query_parameters(query_params)
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
# --- Association query
aq = AssociationQuery()
aq.set_filter(aq.filter_subject(res_by_name["ID1"]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 2)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject([res_by_name["ID1"], res_by_name["PS1"]]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 4)
aq = AssociationQuery()
aq.set_filter(aq.filter_object([res_by_name["DP1"], res_by_name["DP2"]]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 2)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject([res_by_name["ID1"], res_by_name["PS1"]]),
aq.filter_predicate(PRED.hasTestDataset))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 2)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject(res_by_name["ID1"]),
aq.filter_predicate(PRED.hasTestDataset),
aq.filter_object(res_by_name["DP1"]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 1)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject_type(RT.TestInstrument))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 2)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject_type([RT.TestSite, RT.TestSite]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 5)
aq = AssociationQuery()
aq.set_filter(aq.filter_object_type(RT.TestDataset))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 2)
aq = AssociationQuery()
aq.set_filter(aq.filter_object_type([RT.TestSite, RT.TestSite]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 3)
aq = AssociationQuery()
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 8)
# --- Association descendants (recursively)
aq = AssociationQuery()
aq.set_filter(aq.filter_object_descendants(res_by_name["OS1"], predicate=[PRED.hasTestSite]))
assoc_objs = self.rr.find_associations(query=aq.get_query(), id_only=False)
self.assertEquals(len(assoc_objs), 3)
# --- Lifecycle state
rq = ResourceQuery()
rq.set_filter(rq.filter_type(RT.TestInstrument))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
self.rr.lcs_delete(res_by_name["ID2"])
rq = ResourceQuery()
rq.set_filter(rq.filter_type(RT.TestInstrument))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 1)
rq.set_query_arg("with_deleted", True)
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
self.rr.undelete(res_by_name["ID2"])
rq = ResourceQuery()
rq.set_filter(rq.filter_type(RT.TestInstrument))
res_obj = self.rr.find_resources_ext(query=rq.get_query(), id_only=False)
self.assertEquals(len(res_obj), 2)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject(res_by_name["PD1"]))
assocs = self.rr.find_associations(query=aq.get_query())
self.assertEquals(len(assocs), 1)
self.rr.lcs_delete(res_by_name["ID1"])
aq = AssociationQuery()
aq.set_filter(aq.filter_subject(res_by_name["PD1"]))
assocs = self.rr.find_associations(query=aq.get_query())
self.assertEquals(len(assocs), 0)
aq.set_query_arg("with_deleted", True)
assocs = self.rr.find_associations(query=aq.get_query())
self.assertEquals(len(assocs), 1)
self.rr.undelete(res_by_name["ID1"], undelete_associations=True)
aq = AssociationQuery()
aq.set_filter(aq.filter_subject(res_by_name["PD1"]))
assocs = self.rr.find_associations(query=aq.get_query())
self.assertEquals(len(assocs), 1)
# --- Clean up
self.rr.rr_store.delete_mult(res_by_name.values())
