def test_MLFlowBackendFactory(self):
"""
Test pypads mlflow backend factory
:return:
"""
from pypads.app.backends.mlflow import MLFlowBackendFactory, LocalMlFlowBackend, \
MongoSupportMixin, RemoteMlFlowBackend
from pypads.app.base import PyPads
tracker = PyPads(uri=TEST_FOLDER, config=config)
# --------------------------- asserts ------------------------------
# Without MongoSupport
tracker.config = {**tracker.config, **{"mongo_db":False}}
uri = TEST_FOLDER
self.assertIsInstance(MLFlowBackendFactory.make(uri), LocalMlFlowBackend)
self.assertNotIsInstance(MLFlowBackendFactory.make(uri), MongoSupportMixin)
uri = "http://mlflow.padre-lab.eu"
self.assertIsInstance(MLFlowBackendFactory.make(uri), RemoteMlFlowBackend)
self.assertNotIsInstance(MLFlowBackendFactory.make(uri), MongoSupportMixin)
# With MongoSupport
tracker.config = {**tracker.config, **{"mongo_db":True}}
uri = TEST_FOLDER
self.assertIsInstance(MLFlowBackendFactory.make(uri), MongoSupportMixin)
uri = "http://mlflow.padre-lab.eu"
self.assertIsInstance(MLFlowBackendFactory.make(uri), MongoSupportMixin)
def test_pipeline(self):
"""
This example will track the experiment exection with the default configuration.
:return:
"""
# --------------------------- setup of the tracking ---------------------------
# Activate tracking of pypads
set_up_fns = {}
from pypads.app.base import PyPads
tracker = PyPads(setup_fns=set_up_fns, log_level="DEBUG")
tracker.start_track(experiment_name="1. Experiment")
import timeit
t = timeit.Timer(sklearn_pipeline_experiment)
print(t.timeit(1))
# --------------------------- asserts ---------------------------
run = mlflow.active_run()
assert tracker.api.active_run().info.run_id == run.info.run_id
# artifacts = [x for x in tracker.results.get_artifacts(run_id=run.info.run_id)]
# assert len(artifacts) > 0
tracker.api.end_run()
def test_experiment_configuration(self):
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads()
tracker.start_track(experiment_name="ConfiguredExperiment")
from sklearn import datasets, metrics
from sklearn.tree import DecisionTreeClassifier
# load the iris datasets
dataset = datasets.load_iris()
# fit a model to the data
model = DecisionTreeClassifier()
model.fit(dataset.data, dataset.target)
# make predictions
expected = dataset.target
predicted = model.predict(dataset.data)
# summarize the fit of the model
print(metrics.classification_report(expected, predicted))
# print(metrics.confusion_matrix(expected, predicted))
# assert statements
# assert tracker._experiment.regex == "ConfiguredExperiment"
# TODO add asserts
tracker.api.end_run()
def test_recursive_function_tracking(self):
"""
This example tests the tracking of recursive function
:return:
"""
# --------------------------- setup of the tracking ---------------------------
# Activate tracking of pypads
from pypads.app.base import PyPads
class TestLogger(InjectionLogger):
""" Set pre and post bools to true. This is a utility logger for testing purposes. """
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
def __post__(self, ctx, *args, _logger_call, _pypads_pre_return, _pypads_result, _args, _kwargs, **kwargs):
nonlocal i
i += 1
test = TestLogger()
events = {
"test_logger": test
}
hooks = {
"test_logger": {"on": ["pypads_log"]},
}
config = {"mongo_db": False}
setup_fns = {}
tracker = PyPads(uri=TEST_FOLDER, config=config, autostart=True,
hooks=hooks,
events=events,
setup_fns=setup_fns, log_level="DEBUG")
@tracker.decorators.track(event=["pypads_log"])
def recursive_dummy(s: str):
if len(s) > 1:
recursive_dummy(s[:-1])
else:
print("I am a dummy recursion")
return s
# --------------------------- asserts ---------------------------
i = 0
config["recursion_identity"] = True # Ignoring recursive function calls is enabled
tracker.config = {**DEFAULT_CONFIG, **config}
recursive_dummy("".join([str(i) for i in range(1, 10)]))
self.assertEqual(1, i)
i = 1
config["recursion_identity"] = False # Ignoring recursive function calls is disabled
tracker.config = {**DEFAULT_CONFIG, **config}
recursive_dummy("".join([str(i) for i in range(1, 10)]))
self.assertEqual(10, i)
# !-------------------------- asserts ---------------------------
# End the mlflow run opened by PyPads
tracker.api.end_run()
def parallel_tracking(min_samples_leaf=1):
# --------------------------- setup of the tracking ---------------------------
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(uri=TEST_FOLDER,
config={"mongo_db": False},
autostart=True)
from tests.test_sklearn.base_sklearn_test import sklearn_simple_decision_tree_experiment
sklearn_simple_decision_tree_experiment(min_samples_leaf=min_samples_leaf)
tracker.deactivate_tracking(run_atexits=True, reload_modules=False)
return min_samples_leaf
def test_run_teardown(self):
"""
This example will test run teardown logger functionalities in _call which is called on PyPads __init__
:return:
"""
flag = False
class TestLogger(RunTeardown):
""" Set pre and post bools to true. This is a utility logger for testing purposes. """
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
def _call(self, *args, _pypads_env: LoggerEnv,
_logger_call: LoggerCall, _logger_output, **kwargs):
nonlocal flag
flag = True
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(uri=TEST_FOLDER,
config=config,
setup_fns={},
autostart=True)
tracker.api.register_teardown(name="test_teardown",
post_fn=TestLogger())
# --------------------------- asserts ---------------------------
self.assertFalse(flag)
tracker.api.end_run()
self.assertTrue(flag)
def test_minimal_mapping(self):
# --------------------------- setup of the tracking ---------------------------
# Activate tracking of pypads
from pypads.app.base import PyPads
from pypads.injections.setup.misc_setup import DependencyRSF
set_up_fns = {DependencyRSF()}
tracker = PyPads(uri=TEST_FOLDER,
config=config,
mappings=[minimal],
autostart=True,
setup_fns=set_up_fns)
import timeit
t = timeit.Timer(sklearn_pipeline_experiment)
print(t.timeit(1))
# --------------------------- asserts ---------------------------
run = mlflow.active_run()
assert tracker.api.active_run().info.run_id == run.info.run_id
artifacts = [
x for x in tracker.results.get_artifacts(run_id=run.info.run_id)
]
assert len(artifacts) > 0
def test_order_lf(self):
"""
This example will track the experiment exection with the default configuration.
:return:
"""
# --------------------------- setup of the tracking ---------------------------
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(uri=TEST_FOLDER,
config=config,
hooks=hooks,
events=events,
autostart=True)
tracker.api.track(experiment,
anchors=["order"],
ctx=sys.modules[__name__])
import timeit
t = timeit.Timer(experiment)
print(t.timeit(1))
# --------------------------- asserts ---------------------------
from pypads.app.pypads import get_current_pads
pads = get_current_pads()
assert pads.cache.run_exists(0, 1, 2)
def test_retry(self):
"""
This example will track a failure and only work on the second run.
:return:
"""
# --------------------------- setup of the tracking ---------------------------
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(uri=TEST_FOLDER, config=config, hooks=hooks, events=events, setup_fns={}, autostart=True)
i = 0
def experiment():
print("I'm an function level experiment")
nonlocal i
if i == 0:
i = i + 1
raise Exception("Planed failure")
else:
return "I'm a retried return value."
experiment = tracker.api.track(experiment, anchors=["pypads_log"])
import timeit
t = timeit.Timer(experiment)
print(t.timeit(1))
# --------------------------- asserts ---------------------------
from pypads.app.pypads import get_current_pads
pads = get_current_pads()
assert pads.cache.run_exists(id(logger))
self.assertEqual(i, 1)
def test_run_setup(self):
"""
This example will test run setup logger functionalities in _call which is called on PyPads __init__
:return:
"""
# --------------------------- setup of the tracking ---------------------------
flag = False
class TestLogger(RunSetup):
""" Set pre and post bools to true. This is a utility logger for testing purposes. """
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
def _call(self, *args, _pypads_env: LoggerEnv,
_logger_call: LoggerCall, _logger_output, **kwargs):
nonlocal flag
flag = True
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(uri=TEST_FOLDER,
config=config,
setup_fns={TestLogger()},
autostart=True)
# --------------------------- asserts ---------------------------
self.assertTrue(flag)
def test_dataset(self):
"""
This example will track the concepts created by the decorated function
"""
# --------------------------- setup of the tracking ---------------------------
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(autostart=True)
from sklearn.datasets import make_classification
ds_name = "generated"
@tracker.decorators.dataset(name=ds_name,
output_format={
'X': 'features',
'y': 'targets'
})
def load_data():
X, y = make_classification(n_samples=150)
return X, y
dataset = load_data()
# --------------------------- asserts ---------------------------
datasets_repo = tracker.dataset_repository
hash_id = persistent_hash(str(dataset))
self.assertTrue(datasets_repo.has_object(uid=hash_id))
# !-------------------------- asserts ---------------------------
tracker.api.end_run()
def test_decorator_passed_event(self):
"""
This example will track the experiment exection with passed event.
:return:
"""
# --------------------------- setup of the tracking ---------------------------
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(uri=TEST_FOLDER,
config=config,
hooks=hooks,
events=events,
autostart=True)
@tracker.decorators.track(event="pypads_log")
def experiment():
print("I'm an function level experiment")
return "I'm a return value."
import timeit
t = timeit.Timer(experiment)
print(t.timeit(1))
# --------------------------- asserts ---------------------------
from pypads.app.pypads import get_current_pads
pads = get_current_pads()
assert pads.cache.run_exists(id(logger))
def test_simple_parameter_mapping(self):
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(autostart=True)
from sklearn import datasets, metrics
from sklearn.tree import DecisionTreeClassifier
# load the iris datasets
dataset = datasets.load_iris()
# fit a model to the data
model = DecisionTreeClassifier()
model.fit(dataset.data, dataset.target)
# make predictions
expected = dataset.target
predicted = model.predict(dataset.data)
# summarize the fit of the model
print(metrics.classification_report(expected, predicted))
print(metrics.confusion_matrix(expected, predicted))
# assert statements
import mlflow
run = mlflow.active_run()
assert tracker.api.active_run().info.run_id == run.info.run_id
# assert len(tracker.mlf.list_artifacts(run.info.run_id)) == 0
# parameters = [x for x in tracker.results.get_parameters(run_id=run.info.run_id)]
# assert len(parameters) != 0
tracker.api.end_run()
def test_api_layered_tracking(self):
"""
This example will track the experiment execution with the default configuration.
:return:
"""
# --------------------------- setup of the tracking ---------------------------
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(uri=TEST_FOLDER, config=config, hooks=hooks, events=events, autostart=True)
global experiment
experiment = tracker.api.track(experiment, anchors=["ran"])
global sub_experiment
sub_experiment = tracker.api.track(sub_experiment, anchors=["ran"])
global more_experiment
more_experiment = tracker.api.track(more_experiment, anchors=["ran"])
import timeit
t = timeit.Timer(experiment)
print(t.timeit(1))
# --------------------------- asserts ---------------------------
from pypads.app.pypads import get_current_pads
pads = get_current_pads()
assert pads.cache.run_exists(id(logger))
assert pads.cache.run_get(id(logger)) == 16
# !-------------------------- asserts ---------------------------
def test_multi_injection_logger(self):
"""
This example will test multi injection logger functionalities.
:return:
"""
# --------------------------- setup of the tracking ---------------------------
class TestLogger(MultiInjectionLogger):
""" increase attrs i and j with each call. This is a utility logger for testing purposes. """
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.i = 0
@classmethod
def output_schema_class(cls) -> Optional[Type[OutputModel]]:
return DummyOutput
@staticmethod
def finalize_output(pads, logger_call, output, *args, **kwargs):
pass
def __pre__(self, ctx, *args, _logger_call, _logger_output, _args, _kwargs, **kwargs):
self.i += 1
def __post__(self, ctx, *args, _logger_call, _logger_output, _pypads_pre_return, _pypads_result, _args,
_kwargs, **kwargs):
_logger_output.var = self.i
test = TestLogger()
events = {
"test_logger": test
}
hooks = {
"test_logger": {"on": ["pypads_log"]},
}
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(uri=TEST_FOLDER, config=config, hooks=hooks, events=events, setup_fns={}, autostart=True)
experiment = tracker.api.track(dummy_function, anchors=["pypads_log"])
import timeit
t = timeit.Timer(experiment)
print(t.timeit(5))
# --------------------------- asserts ---------------------------
self.assertEqual(test.i, 5)
self.assertTrue(tracker.cache.run_exists(id(test)))
data = tracker.cache.run_get(id(test))
logger_call = data.get('logger_call')
output = data.get('output')
self.assertEqual(len(logger_call.call_stack), 5)
self.assertEqual(output.var, 5)
def test_pool_execution_single_tracker(self):
from pypads.app.base import PyPads
tracker = PyPads(uri=TEST_FOLDER,
config={"mongo_db": False},
autostart=True)
import timeit
t = timeit.Timer(
pool_execution(parallel_no_tracking, punch_dummy_gen()))
print(t.timeit(1))
def test_patch_untracked_changes(self):
"""
This example will test preserving untracked changes in the existing repository pypads will manage
:return:
"""
# Activate tracking of pypads
from pypads.app.base import PyPads
import os
with TempDir(chdr=True) as test_folder:
tracker = PyPads(uri=self.folder.name,
config=config,
setup_fns={},
autostart=True)
managed_git: ManagedGit = tracker.managed_git_factory(
test_folder._path)
# add untracked changes to the repository
with open(os.path.join(test_folder._path, "new_file.txt"),
"w") as file:
file.write("new untracked changes.")
# managed_git: ManagedGit = tracker.managed_git_factory(test_folder._path)
# --------------------------- asserts ------------------------------
self.assertTrue(managed_git.has_changes())
# Create a patch of the current state of the repository
status = managed_git.repo.git.status()
patch, patch_hash = managed_git.create_patch()
# Do some changes
os.remove(os.path.join(test_folder._path, "new_file.txt"))
self.assertNotEqual(status, managed_git.repo.git.status())
# Restore the state
with TempDir(chdr=False) as patch_folder:
with open(os.path.join(patch_folder._path, "patch.patch"),
"w") as f:
f.write(patch)
managed_git.restore_patch(
os.path.join(patch_folder._path, "patch.patch"))
self.assertEqual(status, managed_git.repo.git.status())
tracker.api.end_run()
def test_track_artifact(self):
# --------------------------- setup of the tracking ---------------------------
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(uri=TEST_FOLDER, autostart=True)
import os
import pickle as pkl
import numpy as np
name = 'some_artifact.pickle'
path = os.path.join(os.getcwd(), name)
description = 'logging an artifact from a local path'
obj = np.random.random(size=(3, 3))
keys = [
'experiment_id', 'run_id', 'category', 'storage_type',
'description', 'name', 'description', 'produced_by'
]
with open(path, 'wb') as f:
pkl.dump(obj, f)
tracker.api.log_artifact(local_path=path,
additional_data=None,
holder=None,
description=description)
os.remove(path=path)
holder = tracker.api.get_programmatic_output()
meta = ArtifactMetaModel(value_format='str',
file_format=FileFormats.pickle,
description=description,
file_size=229,
data=str(obj),
parent=holder,
produced_by=holder.produced_by,
part_of=get_reference(holder))
# Load the artifacts
artifacts = [
x for x in tracker.results.get_artifacts(run_id=meta.run.uid)
if x.data == name
]
# Load the data from the pypads path
loaded_data = tracker.results.load_artifact(
name, read_format=FileFormats.pickle)
# --------------------------- asserts ---------------------------
assert bool((loaded_data == obj).all()) is True
assert len(artifacts) == 1
artifacts = artifacts[0]
for key in keys:
assert meta.dict().get(key) == artifacts.dict().get(key)
def test_keras_autolog(self):
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(autostart="KerasAutolog")
import timeit
t = timeit.Timer(keras_simple_sequential_experiment)
print(t.timeit(1))
# --------------------------- asserts ---------------------------
# TODO Add asserts
# !-------------------------- asserts ---------------------------
tracker.api.end_run()
def test_keras_base_class(self):
# --------------------------- setup of the tracking ---------------------------
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(autostart="KerasAutolog", log_level="DEBUG")
import timeit
t = timeit.Timer(keras_simple_sequential_experiment)
print(t.timeit(1))
# --------------------------- asserts ---------------------------
# TODO add asserts
# !-------------------------- asserts ---------------------------
tracker.api.end_run()
def get_current_pads(init=False) -> Union[None, PyPads]:
"""
Get the currently active pypads instance. All duck punched objects use this function for interacting with pypads.
:return:
"""
global current_pads
if not current_pads:
if init:
# Try to reload pads if it was already defined in the active run
config = get_current_config()
if config:
logger.warning(
"PyPads seems to be missing on given run with saved configuration. Reinitializing.")
return PyPads(config=config)
else:
logger.warning(
"PyPads has to be initialized before it can be used. Initializing for your with default values.")
return PyPads()
else:
raise UninitializedTrackerException(
"Pypads didn't get initialized and can't be used. Inititalize PyPads by creating an instance.")
return current_pads
def test_default_tracking(self):
"""
This example will track the experiment exection with the default configuration.
:return:
"""
# --------------------------- setup of the tracking ---------------------------
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(autostart=False, log_level="WARNING")
tracker.start_track(experiment_name="1. Experiment")
tracker.actuators.set_random_seed(seed=1)
import timeit
t = timeit.Timer(sklearn_simple_decision_tree_experiment)
from pypads import logger
logger.info(t.timeit(1))
# --------------------------- asserts ---------------------------
import mlflow
run = mlflow.active_run()
assert tracker.api.active_run().info.run_id == run.info.run_id
tracker.api.end_run()
def test_torch_sequential_class(self):
# --------------------------- setup of the tracking ---------------------------
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(autostart="MNIST-Torch", setup_fns=[])
try:
import timeit
t = timeit.Timer(torch_simple_example)
print(t.timeit(1))
except RuntimeError as e:
logger.warning("Torch bug on re-import: {}".format(str(e)))
# --------------------------- asserts ---------------------------
# TODO Add asserts
# !-------------------------- asserts ---------------------------
tracker.api.end_run()
def test_git_repository_init(self):
"""
This example will test the versioning of source code.
:return:
"""
# Activate tracking of pypads
from pypads.app.base import PyPads
with TempDir(chdr=True) as test_folder:
tracker = PyPads(uri=self.folder.name,
config=config,
setup_fns={},
autostart=True)
# --------------------------- asserts ------------------------------
with self.assertRaises(InvalidGitRepositoryError):
git.Repo(path=test_folder._path)
managed_git: ManagedGit = tracker.managed_git_factory(
test_folder._path)
temp_repo = git.Repo(test_folder._path)
self.assertEqual(temp_repo, managed_git.repo)
tracker.api.end_run()
def test_default_splitter_with_params(self):
# --------------------------- setup of the tracking ---------------------------
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(uri=TEST_FOLDER, autostart=True)
@tracker.decorators.dataset(name="iris")
def load_iris():
from sklearn.datasets import load_iris
return load_iris()
data = load_iris()
splits = tracker.actuators.default_splitter(data.data,
strategy="cv",
n_folds=3,
val_ratio=0.2)
# --------------------------- asserts ---------------------------
# id of the splits logger
from pypads_padre.bindings.events import DEFAULT_PADRE_LOGGING_FNS
SplitILF = DEFAULT_PADRE_LOGGING_FNS["splits"][0]
_id = id(SplitILF)
import numpy
for train_idx, test_idx, val_idx in splits:
print("train: {}\n test: {}\n val: {}".format(
train_idx, test_idx, val_idx))
self.assertTrue(tracker.cache.run_exists("current_split"))
split_id = tracker.cache.run_get("current_split")
self.assertTrue(tracker.cache.run_exists(_id))
logger_cached = tracker.cache.run_get(_id)
output = logger_cached.get('output')
splits = output.splits
self.assertTrue(str(split_id) in splits.splits.keys())
current_split = splits.splits[str(split_id)]
self.assertTrue(
numpy.array_equal(train_idx, current_split.train_set))
self.assertTrue(numpy.array_equal(test_idx,
current_split.test_set))
self.assertTrue(
numpy.array_equal(val_idx, current_split.validation_set))
# !-------------------------- asserts ---------------------------
tracker.api.end_run()
def test_punch_before_import(self):
from pypads.app.base import PyPads
from test_classes.dummy_mapping import _get_punch_dummy_mapping
tracker = PyPads(uri=TEST_FOLDER, mappings=_get_punch_dummy_mapping())
tracker.activate_tracking(reload_modules=True)
tracker.start_track()
from test_classes.dummy_classes import PunchDummy
from test_classes.dummy_classes import PunchDummy2
dummy2 = PunchDummy2(2)
assert hasattr(PunchDummy, "_pypads_mapping_PunchDummy")
assert hasattr(PunchDummy2, "_pypads_mapping_PunchDummy2")
assert hasattr(dummy2, "_pypads_mapping_PunchDummy2")
def test_track_mem_artifact(self):
# --------------------------- setup of the tracking ---------------------------
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(uri=TEST_FOLDER, autostart=True)
path = 'some_artifact'
description = 'Storing test array as an artifact'
keys = [
'experiment_id', 'run_id', 'category', 'storage_type',
'description', 'name', 'description', 'produced_by'
]
import numpy as np
obj = np.random.random(size=(3, 3))
holder = tracker.api.get_programmatic_output()
tracker.api.log_mem_artifact(path=path,
obj=obj,
write_format=FileFormats.pickle,
description=description,
additional_data=None,
holder=None)
meta = ArtifactMetaModel(value_format='str',
file_format=FileFormats.pickle,
description=description,
file_size=229,
data=str(obj),
parent=holder,
produced_by=holder.produced_by,
part_of=get_reference(holder))
artifacts = [
x for x in tracker.results.get_artifacts(run_id=meta.run.uid)
if x.data == path + '.pickle'
]
# --------------------------- asserts ---------------------------
assert len(artifacts) == 1
artifacts = artifacts[0]
for key in keys:
assert meta.dict().get(key) == artifacts.dict().get(key)
def test_injection_logger(self):
"""
This example will test injection logger functionalities in __pre__ and __post__
:return:
"""
# --------------------------- setup of the tracking ---------------------------
class TestLogger(InjectionLogger):
""" Set pre and post bools to true. This is a utility logger for testing purposes. """
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.pre = False
self.post = False
def __pre__(self, ctx, *args, _logger_call, _logger_output, _args, _kwargs, **kwargs):
self.pre = True
def __post__(self, ctx, *args, _logger_call, _pypads_pre_return, _pypads_result, _args, _kwargs, **kwargs):
self.post = True
test = TestLogger()
events = {
"test_logger": test
}
hooks = {
"test_logger": {"on": ["pypads_log"]},
}
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(uri=TEST_FOLDER, config=config, hooks=hooks, events=events, setup_fns={}, autostart=True)
experiment = tracker.api.track(dummy_function, anchors=["pypads_log"])
import timeit
t = timeit.Timer(experiment)
print(t.timeit(1))
# --------------------------- asserts ---------------------------
self.assertTrue(test.pre)
self.assertTrue(test.post)
def test_multiple_fits(self):
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(uri=TEST_FOLDER, autostart=True)
from sklearn import datasets
from sklearn.tree import DecisionTreeClassifier
# load the iris datasets
dataset = datasets.load_iris()
# fit a model to the data
model = DecisionTreeClassifier()
model.fit(dataset.data, dataset.target)
model.fit(dataset.data, dataset.target)
# TODO add asserts
tracker.api.end_run()
def test_failed_logging(self):
"""
This example will track a failure in a decorated function.
:return:
"""
# --------------------------- setup of the tracking ---------------------------
# Activate tracking of pypads
from pypads.app.base import PyPads
tracker = PyPads(uri=TEST_FOLDER, config=config, hooks=hooks, events=events, setup_fns={}, autostart=True)
def failing_function():
print("I'm a failing function")
raise Exception("Planed failure")
failing_function = tracker.api.track(failing_function, anchors=["pypads_log"])
# --------------------------- asserts ---------------------------
with self.assertRaises(Exception):
failing_function()