Esempi in Python per NGS.prepare_data

Esempio n. 1

File: test_NGS.py Progetto: carlosp420/PyPhyloGenomics

    def test_prepare_data(self):
        ionfile = os.path.join(self.cwd, "NGS", "ion_file.fastq")
        NGS.prepare_data(ionfile, 8)

        expected_file1 = os.path.join("data", "modified", "wrk_ionfile.fasta")
        expected_file2 = os.path.join("data", "modified", "wrk_ionfile.fastq")
        self.assertTrue(os.path.isfile(expected_file1))
        self.assertTrue(os.path.isfile(expected_file2))
        os.remove(expected_file1)
        os.remove(expected_file2)

Esempio n. 2

File: prepare_data.py Progetto: carlosp420/transcriptome_analyser

from pyphylogenomics import NGS
import sys

ionfile = sys.argv[1].strip()
index_length = 0;
NGS.prepare_data(ionfile, index_length);