def test(self):
"""tests model
returns: number correct and total number
"""
with torch.no_grad():
out = self.forward()
dist1, dist2, _, _ = self.criterion(self.labels, out)
test_loss = 0.5 * (dist1.mean() + dist2.mean())
labels = torch.Tensor.cpu(self.labels).numpy()
out = torch.Tensor.cpu(out).numpy()
for i in range(out.shape[0]) :
normals = pcu.estimate_normals(out[i], k=16)
#print(n.shape, n)
fs, vs = poisson_reconstruction(out[i], normals, depth=5, full_depth=3)
print(vs.shape, fs.shape)
filename, file_extension = os.path.splitext(self.filename[i])
file = '%s/%s_%s%s' % (self.export_folder[i], filename, 'out', file_extension)
print(file)
self.output_export(vs, fs, file)
#print(labels.shape, out.shape)
#for i in range(len(labels)) :
# mean_error, R, indices = icp(labels[i], out[i], tolerance=0.0001)
# print(out[i].shape, out[i])
# print(indices.shape, np.unique(indices).shape, indices, np.unique(indices))
#print(out[indices[:len(indices)-self.pad_iter]].shape, self.init_faces)
#self.output_export(vertices, faces)
print(test_loss, len(self.labels))
return test_loss, len(self.labels), out, self.labels
def compute_reward(self, points, normals, depth):
faces, vertices = poisson_reconstruction(points, normals, depth=depth)
reward = self.env.model.surface_similarity(vertices, faces)
if self._illustrate:
illustrate_mesh(vertices, faces).display()
return reward
def update(self):
points, normals = get_points_normals_from(self.input_)
faces, vertices = poisson_reconstruction(points, normals,
depth=self.depth)
self.output_ = get_polydata_from(vertices, faces)
def update(self):
points, normals = get_points_normals_from(self.input_)
faces, vertices = poisson_reconstruction(points,
normals,
depth=self.depth)
self.output_ = get_polydata_from(vertices, faces)
def create_surface_actor(points, n=None, orientationPoint=None, negate=False):
"""Generate point normals using PCA (principal component analysis).
Basically this estimates a local tangent plane around each sample point p
by considering a small neighborhood of points around p, and fitting a plane
to the neighborhood (via PCA).
:param int n: neighborhood size to calculate the normal
:param list orientationPoint: adjust the +/- sign of the normals so that
the normals all point towards a specified point. If None, perform a traversal
of the point cloud and flip neighboring normals so that they are mutually consistent.
:param bool negate: flip all normals
"""
if n is not None:
sampleSize = n
else:
sampleSize = points.GetNumberOfPoints() * .00005
if sampleSize < 10:
sampleSize = 10
polydata = vtk.vtkPolyData()
polydata.SetPoints(points)
print('Estimating normals using PCANormalEstimation')
normals = vtk.vtkPCANormalEstimation()
normals.SetInputData(polydata)
normals.SetSampleSize(sampleSize)
if orientationPoint is not None:
normals.SetNormalOrientationToPoint()
normals.SetOrientationPoint(orientationPoint)
else:
normals.SetNormalOrientationToGraphTraversal()
if negate:
normals.FlipNormalsOn()
normals.Update()
points_array = vtk_to_numpy(points.GetData())
normals_array = vtk_to_numpy(
normals.GetOutput().GetPointData().GetNormals())
faces, vertices = poisson_reconstruction(points_array,
normals_array,
depth=10)
return create_mesh_actor(vertices, faces)
def screenPoisson(xyz_file, ply_file = None):
'''
xyz_file:str， 文件的路径
ply_file:str， 文件的路径
'''
# Helper Function to read the xyz-normals point cloud file
points, normals = points_normals_from(xyz_file)
faces, vertices = poisson_reconstruction(points, normals, depth=10)
# 创建渲染的角色：点云，重建后的网格
points_actor = create_points_actor(points)
mesh_actor = create_mesh_actor(vertices, faces)
render(points_actor, mesh_actor)
# 将表面重建的网格保存为PLY文件
if ply_file != None:
ply_from_array(vertices, faces, output_file = ply_file)
def compute_approx_surface(self, exactness_level=10):
'''
Compute an approximating surface using Poisson recronstruction
exactness_level: controls the smoothness
larger exactness_level will fit the points more --> less smooth
'''
self.compute_pnormals()
LOGGER.info('Computing Poisson surface for {} points'.format(self.npoints))
mtimer = Timer()
sfaces, sverts = poisson_reconstruction(self.points.tolist(),
self.pnormals.tolist(),
depth=exactness_level)
mtimer.end(False)
LOGGER.info('Poisson surface computed! took {} created {} faces and {} vertices.'
.format(mtimer, len(sfaces), len(sverts)))
# represent the poisson surface as a triangulation
self.surf_poisson = TriMesh(sverts, faces=sfaces, label='surf_poisson')
#self.surf_poisson.write_vtp('_temp3.vtp', {})#params)
#self.surf_poisson.remesh()
#self.surf_poisson.write_vtp('_temp3_remeshed.vtp', {})#params)
self.surf_poisson.display()
def poission_rect(points,normals,depth=7,full_depth=5,scale=1.1,samples_per_node=1,cg_depth=0.0):
facets,verticle=pypoisson.poisson_reconstruction(points,normals,depth,full_depth,scale,samples_per_node,cg_depth)
return np.array(facets),np.array(verticle)
#!/usr/bin/env python3 """ @author:Harold @file: poisson.py @time: 27/09/2019 """ from pypoisson import poisson_reconstruction from ply_from_array import points_normals_from, ply_from_array filename = "ism_train_cat_normal.txt" output_file = "ism_train_cat_normal_recon.ply" points, normals = points_normals_from(filename) faces, vertices = poisson_reconstruction(points, normals, depth=10) ply_from_array(vertices, faces, output_file=output_file)
def _get_mesh(self, observation):
faces, vertices = poisson_reconstruction(
observation.points,
observation.normals,
depth=self._reconstruction_depth)
return vertices, faces
def get_mesh(observation, depth=10):
faces, vertices = poisson_reconstruction(observation.points,
observation.normals,
depth=depth)
return vertices, faces
from pypoisson import poisson_reconstruction from ply_from_array import points_normals_from, ply_from_array filename = "horse_with_normals.xyz" output_file = "horse_reconstruction.ply" #Helper Function to read the xyz-normals point cloud file points, normals = points_normals_from(filename) faces, vertices = poisson_reconstruction(points, normals, depth=10) #Helper function to save mesh to PLY Format ply_from_array(vertices, faces, output_file=output_file)