def rvapi_shutdown(self, amopt):
"""Return any results to jscofe
Parameters
----------
amopt : dict
AMPLE results dictionary with all information
"""
rvdoc = amopt['rvapi_document']
if not rvdoc: return
work_dir = amopt['work_dir']
# Create dictionary we're going to return
meta = {'first_tab_id': self.summary_tab_id, 'results': []}
nresults = 0
if 'mrbump_results' in amopt and amopt['mrbump_results']:
mrb_results = amopt['mrbump_results']
nresults = min(3, len(mrb_results))
if nresults > 0:
root = os.path.join(work_dir, "..")
for fdata in mrbump_util.ResultsSummary(
mrb_results[:nresults]).topFiles(nresults):
# Mangle paths
fdata['pdb'] = os.path.relpath(root, fdata['pdb'])
fdata['mtz'] = os.path.relpath(root, fdata['mtz'])
meta['results'].append(fdata)
# Commit to file
logger.debug("Exporting pyrvapi metadata:\n{0}".format(meta))
pyrvapi.rvapi_put_meta(json.dumps(meta))
pyrvapi.rvapi_store_document2(rvdoc)
return
def storeReportDocument(self, meta_str):
if not self.rvapi_doc_path:
self.rvapi_doc_path = "rvapi_document"
if meta_str:
pyrvapi.rvapi_put_meta(meta_str)
pyrvapi.rvapi_store_document2(self.rvapi_doc_path)
return
def rvapi_shutdown(self, amopt):
"""Return any results to jscofe
Parameters
----------
amopt : dict
AMPLE results dictionary with all information
"""
rvdoc = amopt['rvapi_document']
if not rvdoc:
return
# Create dictionary we're going to return
meta = {'results': []}
nresults = 0
if bool(amopt.get('mrbump_results')):
mrb_results = amopt['mrbump_results']
nresults = min(3, len(mrb_results))
if nresults > 0:
for fdata in mrbump_util.ResultsSummary(
mrb_results[:nresults]).topFiles(nresults):
# Mangle paths. relpath assumes args are directories so need to add ..
fdata['pdb'] = self.fix_path(fdata['pdb'])
fdata['mtz'] = self.fix_path(fdata['mtz'])
meta['results'].append(fdata)
# Commit to file
logger.debug("Exporting pyrvapi metadata:\n{0}".format(meta))
pyrvapi.rvapi_put_meta(json.dumps(meta))
pyrvapi.rvapi_store_document2(rvdoc)
return
def rvapi_shutdown(self, amopt):
"""Return any results to jscofe
Parameters
----------
amopt : dict
AMPLE results dictionary with all information
"""
rvdoc = amopt['rvapi_document']
if not rvdoc:
return
# Create dictionary we're going to return
meta = {'results' : []}
nresults = 0
if bool(amopt.get('mrbump_results')):
mrb_results = amopt['mrbump_results']
nresults = min(3, len(mrb_results))
if nresults > 0:
for fdata in mrbump_util.ResultsSummary(mrb_results[:nresults]).topFiles(nresults):
# Mangle paths. relpath assumes args are directories so need to add ..
fdata['pdb'] = self.fix_path(fdata['pdb'])
fdata['mtz'] = self.fix_path(fdata['mtz'])
meta['results'].append(fdata)
# Commit to file
logger.debug("Exporting pyrvapi metadata:\n{0}".format(meta))
pyrvapi.rvapi_put_meta(json.dumps(meta))
pyrvapi.rvapi_store_document2(rvdoc)
return
def write_meta(self):
self.output_meta["report_row"] = self.page_cursor[1]
meta = json.dumps(self.output_meta, indent=2)
with open(os.path.join(self.workdir, "ccp4go.meta.json"), "w") as f:
f.write(meta)
if self.rvapi_doc_path:
pyrvapi.rvapi_put_meta(meta)
pyrvapi.rvapi_store_document2(self.rvapi_doc_path)
return
def store(self):
pyrvapi.rvapi_put_meta(self.meta)
pyrvapi.rvapi_store_document2(self._html_fname)
def save_document(self):
pyrvapi.rvapi_put_meta(self.rvapi_meta.to_json())
pyrvapi.rvapi_store_document2(self.rvapi_document)
pyrvapi.rvapi_keep_polling(True)
def save_document(self):
pyrvapi.rvapi_put_meta(self.rvapi_meta.to_json())
pyrvapi.rvapi_store_document2(self.rvapi_document)
pyrvapi.rvapi_keep_polling(True)