def getTestSuite():
"""
set up composite test suite
"""
test_suite = unittest.TestSuite([])
test_suite.addTests(unittest.TestLoader().loadTestsFromTestCase(
TestSingleSnpScale)) #Tests Ludicrous Speed GWAS
return test_suite
if __name__ == '__main__':
#logging.basicConfig(level=logging.INFO)
logging.getLogger().setLevel(logging.WARN)
suites = getTestSuite()
if True:
r = unittest.TextTestRunner(failfast=False)
ret = r.run(suites)
assert ret.wasSuccessful()
else: #runner test run
logging.basicConfig(level=logging.INFO)
from pysnptools.util.mapreduce1.distributabletest import DistributableTest
runner = LocalMultiProc(taskcount=22,
mkl_num_threads=5,
just_one_process=False)
distributable_test = DistributableTest(suites, "temp_test")
print(runner.run(distributable_test))
logging.info("done")
def getTestSuite():
"""
set up composite test suite
"""
test_suite = unittest.TestSuite([])
test_suite.addTests(unittest.TestLoader().loadTestsFromTestCase(
TestSingleSnpScale)) #Tests Ludicrous Speed GWAS
return test_suite
if __name__ == '__main__':
#from fastlmm.ludicrous.test import getTestSuite, TestOneMil
logging.basicConfig(level=logging.INFO)
suites = getTestSuite()
if True:
r = unittest.TextTestRunner(failfast=True)
r.run(suites)
else: #runner test run
logging.basicConfig(level=logging.INFO)
from pysnptools.util.mapreduce1.distributabletest import DistributableTest
runner = LocalMultiProc(taskcount=22,
mkl_num_threads=5,
just_one_process=False)
distributable_test = DistributableTest(suites, "temp_test")
print runner.run(distributable_test)
logging.info("done")