def __init__(
self,
input_size: int,
output_size: int,
hidden_size: int,
n_hidden_layers: int,
x_reals: List[str],
x_categoricals: List[str],
embedding_sizes: Dict[str, Tuple[int, int]],
embedding_labels: Dict[str, List[str]],
static_categoricals: List[str],
static_reals: List[str],
time_varying_categoricals_encoder: List[str],
time_varying_categoricals_decoder: List[str],
time_varying_reals_encoder: List[str],
time_varying_reals_decoder: List[str],
embedding_paddings: List[str],
categorical_groups: Dict[str, List[str]],
**kwargs,
):
# saves arguments in signature to `.hparams` attribute, mandatory call - do not skip this
self.save_hyperparameters()
# pass additional arguments to BaseModel.__init__, mandatory call - do not skip this
super().__init__(**kwargs)
# create embedder - can be fed with x["encoder_cat"] or x["decoder_cat"] and will return
# dictionary of category names mapped to embeddings
self.input_embeddings = MultiEmbedding(
embedding_sizes=self.hparams.embedding_sizes,
categorical_groups=self.hparams.categorical_groups,
embedding_paddings=self.hparams.embedding_paddings,
x_categoricals=self.hparams.x_categoricals,
max_embedding_size=self.hparams.hidden_size,
)
# calculate the size of all concatenated embeddings + continous variables
n_features = sum(embedding_size
for classes_size, embedding_size in self.hparams.
embedding_sizes.values()) + len(self.reals)
# create network that will be fed with continious variables and embeddings
self.network = FullyConnectedModule(
input_size=self.hparams.input_size * n_features,
output_size=self.hparams.output_size,
hidden_size=self.hparams.hidden_size,
n_hidden_layers=self.hparams.n_hidden_layers,
)
def __init__(
self,
cell_type: str = "LSTM",
hidden_size: int = 10,
rnn_layers: int = 2,
dropout: float = 0.1,
static_categoricals: List[str] = [],
static_reals: List[str] = [],
time_varying_categoricals_encoder: List[str] = [],
time_varying_categoricals_decoder: List[str] = [],
categorical_groups: Dict[str, List[str]] = {},
time_varying_reals_encoder: List[str] = [],
time_varying_reals_decoder: List[str] = [],
embedding_sizes: Dict[str, Tuple[int, int]] = {},
embedding_paddings: List[str] = [],
embedding_labels: Dict[str, np.ndarray] = {},
x_reals: List[str] = [],
x_categoricals: List[str] = [],
output_size: Union[int, List[int]] = 1,
target: Union[str, List[str]] = None,
target_lags: Dict[str, List[int]] = {},
loss: MultiHorizonMetric = None,
logging_metrics: nn.ModuleList = None,
**kwargs,
):
"""
Recurrent Network.
Simple LSTM or GRU layer followed by output layer
Args:
cell_type (str, optional): Recurrent cell type ["LSTM", "GRU"]. Defaults to "LSTM".
hidden_size (int, optional): hidden recurrent size - the most important hyperparameter along with
``rnn_layers``. Defaults to 10.
rnn_layers (int, optional): Number of RNN layers - important hyperparameter. Defaults to 2.
dropout (float, optional): Dropout in RNN layers. Defaults to 0.1.
static_categoricals: integer of positions of static categorical variables
static_reals: integer of positions of static continuous variables
time_varying_categoricals_encoder: integer of positions of categorical variables for encoder
time_varying_categoricals_decoder: integer of positions of categorical variables for decoder
time_varying_reals_encoder: integer of positions of continuous variables for encoder
time_varying_reals_decoder: integer of positions of continuous variables for decoder
categorical_groups: dictionary where values
are list of categorical variables that are forming together a new categorical
variable which is the key in the dictionary
x_reals: order of continuous variables in tensor passed to forward function
x_categoricals: order of categorical variables in tensor passed to forward function
embedding_sizes: dictionary mapping (string) indices to tuple of number of categorical classes and
embedding size
embedding_paddings: list of indices for embeddings which transform the zero's embedding to a zero vector
embedding_labels: dictionary mapping (string) indices to list of categorical labels
output_size (Union[int, List[int]], optional): number of outputs (e.g. number of quantiles for
QuantileLoss and one target or list of output sizes).
target (str, optional): Target variable or list of target variables. Defaults to None.
target_lags (Dict[str, Dict[str, int]]): dictionary of target names mapped to list of time steps by
which the variable should be lagged.
Lags can be useful to indicate seasonality to the models. If you know the seasonalit(ies) of your data,
add at least the target variables with the corresponding lags to improve performance.
Defaults to no lags, i.e. an empty dictionary.
loss (MultiHorizonMetric, optional): loss: loss function taking prediction and targets.
logging_metrics (nn.ModuleList, optional): Metrics to log during training.
Defaults to nn.ModuleList([SMAPE(), MAE(), RMSE(), MAPE(), MASE()]).
"""
if loss is None:
loss = MAE()
if logging_metrics is None:
logging_metrics = nn.ModuleList(
[SMAPE(), MAE(), RMSE(),
MAPE(), MASE()])
self.save_hyperparameters()
# store loss function separately as it is a module
super().__init__(loss=loss, logging_metrics=logging_metrics, **kwargs)
self.embeddings = MultiEmbedding(
embedding_sizes=embedding_sizes,
embedding_paddings=embedding_paddings,
categorical_groups=categorical_groups,
x_categoricals=x_categoricals,
)
lagged_target_names = [
l for lags in target_lags.values() for l in lags
]
assert set(self.encoder_variables) - set(
to_list(target)
) - set(lagged_target_names) == set(self.decoder_variables) - set(
lagged_target_names
), "Encoder and decoder variables have to be the same apart from target variable"
for targeti in to_list(target):
assert (
targeti in time_varying_reals_encoder
), f"target {targeti} has to be real" # todo: remove this restriction
assert (
isinstance(target, str) and isinstance(loss, MultiHorizonMetric)
) or (
isinstance(target, (list, tuple)) and isinstance(loss, MultiLoss)
and len(loss) == len(target)
), "number of targets should be equivalent to number of loss metrics"
rnn_class = get_rnn(cell_type)
cont_size = len(self.reals)
cat_size = sum(
[size[1] for size in self.hparams.embedding_sizes.values()])
input_size = cont_size + cat_size
self.rnn = rnn_class(
input_size=input_size,
hidden_size=self.hparams.hidden_size,
num_layers=self.hparams.rnn_layers,
dropout=self.hparams.dropout if self.hparams.rnn_layers > 1 else 0,
batch_first=True,
)
# add linear layers for argument projects
if isinstance(target, str): # single target
self.output_projector = nn.Linear(self.hparams.hidden_size,
self.hparams.output_size)
assert not isinstance(
self.loss, QuantileLoss
), "QuantileLoss does not work with recurrent network"
else: # multi target
self.output_projector = nn.ModuleList([
nn.Linear(self.hparams.hidden_size, size)
for size in self.hparams.output_size
])
for l in self.loss:
assert not isinstance(
l, QuantileLoss
), "QuantileLoss does not work with recurrent network"
def __init__(
self,
hidden_size: int = 16,
lstm_layers: int = 1,
dropout: float = 0.1,
output_size: Union[int, List[int]] = 7,
loss: MultiHorizonMetric = None,
attention_head_size: int = 4,
max_encoder_length: int = 10,
static_categoricals: List[str] = [],
static_reals: List[str] = [],
time_varying_categoricals_encoder: List[str] = [],
time_varying_categoricals_decoder: List[str] = [],
categorical_groups: Dict[str, List[str]] = {},
time_varying_reals_encoder: List[str] = [],
time_varying_reals_decoder: List[str] = [],
x_reals: List[str] = [],
x_categoricals: List[str] = [],
hidden_continuous_size: int = 8,
hidden_continuous_sizes: Dict[str, int] = {},
embedding_sizes: Dict[str, Tuple[int, int]] = {},
embedding_paddings: List[str] = [],
embedding_labels: Dict[str, np.ndarray] = {},
learning_rate: float = 1e-3,
log_interval: Union[int, float] = -1,
log_val_interval: Union[int, float] = None,
log_gradient_flow: bool = False,
reduce_on_plateau_patience: int = 1000,
monotone_constaints: Dict[str, int] = {},
share_single_variable_networks: bool = False,
logging_metrics: nn.ModuleList = None,
**kwargs,
):
"""
Temporal Fusion Transformer for forecasting timeseries - use its :py:meth:`~from_dataset` method if possible.
Implementation of the article
`Temporal Fusion Transformers for Interpretable Multi-horizon Time Series
Forecasting <https://arxiv.org/pdf/1912.09363.pdf>`_. The network outperforms DeepAR by Amazon by 36-69%
in benchmarks.
Enhancements compared to the original implementation (apart from capabilities added through base model
such as monotone constraints):
* static variables can be continuous
* multiple categorical variables can be summarized with an EmbeddingBag
* variable encoder and decoder length by sample
* categorical embeddings are not transformed by variable selection network (because it is a redundant operation)
* variable dimension in variable selection network are scaled up via linear interpolation to reduce
number of parameters
* non-linear variable processing in variable selection network can be shared among decoder and encoder
(not shared by default)
Tune its hyperparameters with
:py:func:`~pytorch_forecasting.models.temporal_fusion_transformer.tuning.optimize_hyperparameters`.
Args:
hidden_size: hidden size of network which is its main hyperparameter and can range from 8 to 512
lstm_layers: number of LSTM layers (2 is mostly optimal)
dropout: dropout rate
output_size: number of outputs (e.g. number of quantiles for QuantileLoss and one target or list
of output sizes).
loss: loss function taking prediction and targets
attention_head_size: number of attention heads (4 is a good default)
max_encoder_length: length to encode (can be far longer than the decoder length but does not have to be)
static_categoricals: names of static categorical variables
static_reals: names of static continuous variables
time_varying_categoricals_encoder: names of categorical variables for encoder
time_varying_categoricals_decoder: names of categorical variables for decoder
time_varying_reals_encoder: names of continuous variables for encoder
time_varying_reals_decoder: names of continuous variables for decoder
categorical_groups: dictionary where values
are list of categorical variables that are forming together a new categorical
variable which is the key in the dictionary
x_reals: order of continuous variables in tensor passed to forward function
x_categoricals: order of categorical variables in tensor passed to forward function
hidden_continuous_size: default for hidden size for processing continous variables (similar to categorical
embedding size)
hidden_continuous_sizes: dictionary mapping continuous input indices to sizes for variable selection
(fallback to hidden_continuous_size if index is not in dictionary)
embedding_sizes: dictionary mapping (string) indices to tuple of number of categorical classes and
embedding size
embedding_paddings: list of indices for embeddings which transform the zero's embedding to a zero vector
embedding_labels: dictionary mapping (string) indices to list of categorical labels
learning_rate: learning rate
log_interval: log predictions every x batches, do not log if 0 or less, log interpretation if > 0. If < 1.0
, will log multiple entries per batch. Defaults to -1.
log_val_interval: frequency with which to log validation set metrics, defaults to log_interval
log_gradient_flow: if to log gradient flow, this takes time and should be only done to diagnose training
failures
reduce_on_plateau_patience (int): patience after which learning rate is reduced by a factor of 10
monotone_constaints (Dict[str, int]): dictionary of monotonicity constraints for continuous decoder
variables mapping
position (e.g. ``"0"`` for first position) to constraint (``-1`` for negative and ``+1`` for positive,
larger numbers add more weight to the constraint vs. the loss but are usually not necessary).
This constraint significantly slows down training. Defaults to {}.
share_single_variable_networks (bool): if to share the single variable networks between the encoder and
decoder. Defaults to False.
logging_metrics (nn.ModuleList[LightningMetric]): list of metrics that are logged during training.
Defaults to nn.ModuleList([SMAPE(), MAE(), RMSE(), MAPE()]).
**kwargs: additional arguments to :py:class:`~BaseModel`.
"""
if logging_metrics is None:
logging_metrics = nn.ModuleList([SMAPE(), MAE(), RMSE(), MAPE()])
if loss is None:
loss = QuantileLoss()
self.save_hyperparameters()
# store loss function separately as it is a module
assert isinstance(
loss,
LightningMetric), "Loss has to be a PyTorch Lightning `Metric`"
super().__init__(loss=loss, logging_metrics=logging_metrics, **kwargs)
# processing inputs
# embeddings
self.input_embeddings = MultiEmbedding(
embedding_sizes=self.hparams.embedding_sizes,
categorical_groups=self.hparams.categorical_groups,
embedding_paddings=self.hparams.embedding_paddings,
x_categoricals=self.hparams.x_categoricals,
max_embedding_size=self.hparams.hidden_size,
)
# continuous variable processing
self.prescalers = nn.ModuleDict({
name: nn.Linear(
1,
self.hparams.hidden_continuous_sizes.get(
name, self.hparams.hidden_continuous_size))
for name in self.reals
})
# variable selection
# variable selection for static variables
static_input_sizes = {
name: self.hparams.embedding_sizes[name][1]
for name in self.hparams.static_categoricals
}
static_input_sizes.update({
name: self.hparams.hidden_continuous_sizes.get(
name, self.hparams.hidden_continuous_size)
for name in self.hparams.static_reals
})
self.static_variable_selection = VariableSelectionNetwork(
input_sizes=static_input_sizes,
hidden_size=self.hparams.hidden_size,
input_embedding_flags={
name: True
for name in self.hparams.static_categoricals
},
dropout=self.hparams.dropout,
prescalers=self.prescalers,
)
# variable selection for encoder and decoder
encoder_input_sizes = {
name: self.hparams.embedding_sizes[name][1]
for name in self.hparams.time_varying_categoricals_encoder
}
encoder_input_sizes.update({
name: self.hparams.hidden_continuous_sizes.get(
name, self.hparams.hidden_continuous_size)
for name in self.hparams.time_varying_reals_encoder
})
decoder_input_sizes = {
name: self.hparams.embedding_sizes[name][1]
for name in self.hparams.time_varying_categoricals_decoder
}
decoder_input_sizes.update({
name: self.hparams.hidden_continuous_sizes.get(
name, self.hparams.hidden_continuous_size)
for name in self.hparams.time_varying_reals_decoder
})
# create single variable grns that are shared across decoder and encoder
if self.hparams.share_single_variable_networks:
self.shared_single_variable_grns = nn.ModuleDict()
for name, input_size in encoder_input_sizes.items():
self.shared_single_variable_grns[name] = GatedResidualNetwork(
input_size,
min(input_size, self.hparams.hidden_size),
self.hparams.hidden_size,
self.hparams.dropout,
)
for name, input_size in decoder_input_sizes.items():
if name not in self.shared_single_variable_grns:
self.shared_single_variable_grns[
name] = GatedResidualNetwork(
input_size,
min(input_size, self.hparams.hidden_size),
self.hparams.hidden_size,
self.hparams.dropout,
)
self.encoder_variable_selection = VariableSelectionNetwork(
input_sizes=encoder_input_sizes,
hidden_size=self.hparams.hidden_size,
input_embedding_flags={
name: True
for name in self.hparams.time_varying_categoricals_encoder
},
dropout=self.hparams.dropout,
context_size=self.hparams.hidden_size,
prescalers=self.prescalers,
single_variable_grns={}
if not self.hparams.share_single_variable_networks else
self.shared_single_variable_grns,
)
self.decoder_variable_selection = VariableSelectionNetwork(
input_sizes=decoder_input_sizes,
hidden_size=self.hparams.hidden_size,
input_embedding_flags={
name: True
for name in self.hparams.time_varying_categoricals_decoder
},
dropout=self.hparams.dropout,
context_size=self.hparams.hidden_size,
prescalers=self.prescalers,
single_variable_grns={}
if not self.hparams.share_single_variable_networks else
self.shared_single_variable_grns,
)
# static encoders
# for variable selection
self.static_context_variable_selection = GatedResidualNetwork(
input_size=self.hparams.hidden_size,
hidden_size=self.hparams.hidden_size,
output_size=self.hparams.hidden_size,
dropout=self.hparams.dropout,
)
# for hidden state of the lstm
self.static_context_initial_hidden_lstm = GatedResidualNetwork(
input_size=self.hparams.hidden_size,
hidden_size=self.hparams.hidden_size,
output_size=self.hparams.hidden_size,
dropout=self.hparams.dropout,
)
# for cell state of the lstm
self.static_context_initial_cell_lstm = GatedResidualNetwork(
input_size=self.hparams.hidden_size,
hidden_size=self.hparams.hidden_size,
output_size=self.hparams.hidden_size,
dropout=self.hparams.dropout,
)
# for post lstm static enrichment
self.static_context_enrichment = GatedResidualNetwork(
self.hparams.hidden_size, self.hparams.hidden_size,
self.hparams.hidden_size, self.hparams.dropout)
# lstm encoder (history) and decoder (future) for local processing
self.lstm_encoder = LSTM(
input_size=self.hparams.hidden_size,
hidden_size=self.hparams.hidden_size,
num_layers=self.hparams.lstm_layers,
dropout=self.hparams.dropout
if self.hparams.lstm_layers > 1 else 0,
batch_first=True,
)
self.lstm_decoder = LSTM(
input_size=self.hparams.hidden_size,
hidden_size=self.hparams.hidden_size,
num_layers=self.hparams.lstm_layers,
dropout=self.hparams.dropout
if self.hparams.lstm_layers > 1 else 0,
batch_first=True,
)
# skip connection for lstm
self.post_lstm_gate_encoder = GatedLinearUnit(
self.hparams.hidden_size, dropout=self.hparams.dropout)
self.post_lstm_gate_decoder = self.post_lstm_gate_encoder
# self.post_lstm_gate_decoder = GatedLinearUnit(self.hparams.hidden_size, dropout=self.hparams.dropout)
self.post_lstm_add_norm_encoder = AddNorm(self.hparams.hidden_size,
trainable_add=False)
# self.post_lstm_add_norm_decoder = AddNorm(self.hparams.hidden_size, trainable_add=True)
self.post_lstm_add_norm_decoder = self.post_lstm_add_norm_encoder
# static enrichment and processing past LSTM
self.static_enrichment = GatedResidualNetwork(
input_size=self.hparams.hidden_size,
hidden_size=self.hparams.hidden_size,
output_size=self.hparams.hidden_size,
dropout=self.hparams.dropout,
context_size=self.hparams.hidden_size,
)
# attention for long-range processing
self.multihead_attn = InterpretableMultiHeadAttention(
d_model=self.hparams.hidden_size,
n_head=self.hparams.attention_head_size,
dropout=self.hparams.dropout)
self.post_attn_gate_norm = GateAddNorm(self.hparams.hidden_size,
dropout=self.hparams.dropout,
trainable_add=False)
self.pos_wise_ff = GatedResidualNetwork(self.hparams.hidden_size,
self.hparams.hidden_size,
self.hparams.hidden_size,
dropout=self.hparams.dropout)
# output processing -> no dropout at this late stage
self.pre_output_gate_norm = GateAddNorm(self.hparams.hidden_size,
dropout=None,
trainable_add=False)
if self.n_targets > 1: # if to run with multiple targets
self.output_layer = nn.ModuleList([
nn.Linear(self.hparams.hidden_size, output_size)
for output_size in self.hparams.output_size
])
else:
self.output_layer = nn.Linear(self.hparams.hidden_size,
self.hparams.output_size)
class TemporalFusionTransformer(BaseModelWithCovariates):
def __init__(
self,
hidden_size: int = 16,
lstm_layers: int = 1,
dropout: float = 0.1,
output_size: Union[int, List[int]] = 7,
loss: MultiHorizonMetric = None,
attention_head_size: int = 4,
max_encoder_length: int = 10,
static_categoricals: List[str] = [],
static_reals: List[str] = [],
time_varying_categoricals_encoder: List[str] = [],
time_varying_categoricals_decoder: List[str] = [],
categorical_groups: Dict[str, List[str]] = {},
time_varying_reals_encoder: List[str] = [],
time_varying_reals_decoder: List[str] = [],
x_reals: List[str] = [],
x_categoricals: List[str] = [],
hidden_continuous_size: int = 8,
hidden_continuous_sizes: Dict[str, int] = {},
embedding_sizes: Dict[str, Tuple[int, int]] = {},
embedding_paddings: List[str] = [],
embedding_labels: Dict[str, np.ndarray] = {},
learning_rate: float = 1e-3,
log_interval: Union[int, float] = -1,
log_val_interval: Union[int, float] = None,
log_gradient_flow: bool = False,
reduce_on_plateau_patience: int = 1000,
monotone_constaints: Dict[str, int] = {},
share_single_variable_networks: bool = False,
logging_metrics: nn.ModuleList = None,
**kwargs,
):
"""
Temporal Fusion Transformer for forecasting timeseries - use its :py:meth:`~from_dataset` method if possible.
Implementation of the article
`Temporal Fusion Transformers for Interpretable Multi-horizon Time Series
Forecasting <https://arxiv.org/pdf/1912.09363.pdf>`_. The network outperforms DeepAR by Amazon by 36-69%
in benchmarks.
Enhancements compared to the original implementation (apart from capabilities added through base model
such as monotone constraints):
* static variables can be continuous
* multiple categorical variables can be summarized with an EmbeddingBag
* variable encoder and decoder length by sample
* categorical embeddings are not transformed by variable selection network (because it is a redundant operation)
* variable dimension in variable selection network are scaled up via linear interpolation to reduce
number of parameters
* non-linear variable processing in variable selection network can be shared among decoder and encoder
(not shared by default)
Tune its hyperparameters with
:py:func:`~pytorch_forecasting.models.temporal_fusion_transformer.tuning.optimize_hyperparameters`.
Args:
hidden_size: hidden size of network which is its main hyperparameter and can range from 8 to 512
lstm_layers: number of LSTM layers (2 is mostly optimal)
dropout: dropout rate
output_size: number of outputs (e.g. number of quantiles for QuantileLoss and one target or list
of output sizes).
loss: loss function taking prediction and targets
attention_head_size: number of attention heads (4 is a good default)
max_encoder_length: length to encode (can be far longer than the decoder length but does not have to be)
static_categoricals: names of static categorical variables
static_reals: names of static continuous variables
time_varying_categoricals_encoder: names of categorical variables for encoder
time_varying_categoricals_decoder: names of categorical variables for decoder
time_varying_reals_encoder: names of continuous variables for encoder
time_varying_reals_decoder: names of continuous variables for decoder
categorical_groups: dictionary where values
are list of categorical variables that are forming together a new categorical
variable which is the key in the dictionary
x_reals: order of continuous variables in tensor passed to forward function
x_categoricals: order of categorical variables in tensor passed to forward function
hidden_continuous_size: default for hidden size for processing continous variables (similar to categorical
embedding size)
hidden_continuous_sizes: dictionary mapping continuous input indices to sizes for variable selection
(fallback to hidden_continuous_size if index is not in dictionary)
embedding_sizes: dictionary mapping (string) indices to tuple of number of categorical classes and
embedding size
embedding_paddings: list of indices for embeddings which transform the zero's embedding to a zero vector
embedding_labels: dictionary mapping (string) indices to list of categorical labels
learning_rate: learning rate
log_interval: log predictions every x batches, do not log if 0 or less, log interpretation if > 0. If < 1.0
, will log multiple entries per batch. Defaults to -1.
log_val_interval: frequency with which to log validation set metrics, defaults to log_interval
log_gradient_flow: if to log gradient flow, this takes time and should be only done to diagnose training
failures
reduce_on_plateau_patience (int): patience after which learning rate is reduced by a factor of 10
monotone_constaints (Dict[str, int]): dictionary of monotonicity constraints for continuous decoder
variables mapping
position (e.g. ``"0"`` for first position) to constraint (``-1`` for negative and ``+1`` for positive,
larger numbers add more weight to the constraint vs. the loss but are usually not necessary).
This constraint significantly slows down training. Defaults to {}.
share_single_variable_networks (bool): if to share the single variable networks between the encoder and
decoder. Defaults to False.
logging_metrics (nn.ModuleList[LightningMetric]): list of metrics that are logged during training.
Defaults to nn.ModuleList([SMAPE(), MAE(), RMSE(), MAPE()]).
**kwargs: additional arguments to :py:class:`~BaseModel`.
"""
if logging_metrics is None:
logging_metrics = nn.ModuleList([SMAPE(), MAE(), RMSE(), MAPE()])
if loss is None:
loss = QuantileLoss()
self.save_hyperparameters()
# store loss function separately as it is a module
assert isinstance(
loss,
LightningMetric), "Loss has to be a PyTorch Lightning `Metric`"
super().__init__(loss=loss, logging_metrics=logging_metrics, **kwargs)
# processing inputs
# embeddings
self.input_embeddings = MultiEmbedding(
embedding_sizes=self.hparams.embedding_sizes,
categorical_groups=self.hparams.categorical_groups,
embedding_paddings=self.hparams.embedding_paddings,
x_categoricals=self.hparams.x_categoricals,
max_embedding_size=self.hparams.hidden_size,
)
# continuous variable processing
self.prescalers = nn.ModuleDict({
name: nn.Linear(
1,
self.hparams.hidden_continuous_sizes.get(
name, self.hparams.hidden_continuous_size))
for name in self.reals
})
# variable selection
# variable selection for static variables
static_input_sizes = {
name: self.hparams.embedding_sizes[name][1]
for name in self.hparams.static_categoricals
}
static_input_sizes.update({
name: self.hparams.hidden_continuous_sizes.get(
name, self.hparams.hidden_continuous_size)
for name in self.hparams.static_reals
})
self.static_variable_selection = VariableSelectionNetwork(
input_sizes=static_input_sizes,
hidden_size=self.hparams.hidden_size,
input_embedding_flags={
name: True
for name in self.hparams.static_categoricals
},
dropout=self.hparams.dropout,
prescalers=self.prescalers,
)
# variable selection for encoder and decoder
encoder_input_sizes = {
name: self.hparams.embedding_sizes[name][1]
for name in self.hparams.time_varying_categoricals_encoder
}
encoder_input_sizes.update({
name: self.hparams.hidden_continuous_sizes.get(
name, self.hparams.hidden_continuous_size)
for name in self.hparams.time_varying_reals_encoder
})
decoder_input_sizes = {
name: self.hparams.embedding_sizes[name][1]
for name in self.hparams.time_varying_categoricals_decoder
}
decoder_input_sizes.update({
name: self.hparams.hidden_continuous_sizes.get(
name, self.hparams.hidden_continuous_size)
for name in self.hparams.time_varying_reals_decoder
})
# create single variable grns that are shared across decoder and encoder
if self.hparams.share_single_variable_networks:
self.shared_single_variable_grns = nn.ModuleDict()
for name, input_size in encoder_input_sizes.items():
self.shared_single_variable_grns[name] = GatedResidualNetwork(
input_size,
min(input_size, self.hparams.hidden_size),
self.hparams.hidden_size,
self.hparams.dropout,
)
for name, input_size in decoder_input_sizes.items():
if name not in self.shared_single_variable_grns:
self.shared_single_variable_grns[
name] = GatedResidualNetwork(
input_size,
min(input_size, self.hparams.hidden_size),
self.hparams.hidden_size,
self.hparams.dropout,
)
self.encoder_variable_selection = VariableSelectionNetwork(
input_sizes=encoder_input_sizes,
hidden_size=self.hparams.hidden_size,
input_embedding_flags={
name: True
for name in self.hparams.time_varying_categoricals_encoder
},
dropout=self.hparams.dropout,
context_size=self.hparams.hidden_size,
prescalers=self.prescalers,
single_variable_grns={}
if not self.hparams.share_single_variable_networks else
self.shared_single_variable_grns,
)
self.decoder_variable_selection = VariableSelectionNetwork(
input_sizes=decoder_input_sizes,
hidden_size=self.hparams.hidden_size,
input_embedding_flags={
name: True
for name in self.hparams.time_varying_categoricals_decoder
},
dropout=self.hparams.dropout,
context_size=self.hparams.hidden_size,
prescalers=self.prescalers,
single_variable_grns={}
if not self.hparams.share_single_variable_networks else
self.shared_single_variable_grns,
)
# static encoders
# for variable selection
self.static_context_variable_selection = GatedResidualNetwork(
input_size=self.hparams.hidden_size,
hidden_size=self.hparams.hidden_size,
output_size=self.hparams.hidden_size,
dropout=self.hparams.dropout,
)
# for hidden state of the lstm
self.static_context_initial_hidden_lstm = GatedResidualNetwork(
input_size=self.hparams.hidden_size,
hidden_size=self.hparams.hidden_size,
output_size=self.hparams.hidden_size,
dropout=self.hparams.dropout,
)
# for cell state of the lstm
self.static_context_initial_cell_lstm = GatedResidualNetwork(
input_size=self.hparams.hidden_size,
hidden_size=self.hparams.hidden_size,
output_size=self.hparams.hidden_size,
dropout=self.hparams.dropout,
)
# for post lstm static enrichment
self.static_context_enrichment = GatedResidualNetwork(
self.hparams.hidden_size, self.hparams.hidden_size,
self.hparams.hidden_size, self.hparams.dropout)
# lstm encoder (history) and decoder (future) for local processing
self.lstm_encoder = LSTM(
input_size=self.hparams.hidden_size,
hidden_size=self.hparams.hidden_size,
num_layers=self.hparams.lstm_layers,
dropout=self.hparams.dropout
if self.hparams.lstm_layers > 1 else 0,
batch_first=True,
)
self.lstm_decoder = LSTM(
input_size=self.hparams.hidden_size,
hidden_size=self.hparams.hidden_size,
num_layers=self.hparams.lstm_layers,
dropout=self.hparams.dropout
if self.hparams.lstm_layers > 1 else 0,
batch_first=True,
)
# skip connection for lstm
self.post_lstm_gate_encoder = GatedLinearUnit(
self.hparams.hidden_size, dropout=self.hparams.dropout)
self.post_lstm_gate_decoder = self.post_lstm_gate_encoder
# self.post_lstm_gate_decoder = GatedLinearUnit(self.hparams.hidden_size, dropout=self.hparams.dropout)
self.post_lstm_add_norm_encoder = AddNorm(self.hparams.hidden_size,
trainable_add=False)
# self.post_lstm_add_norm_decoder = AddNorm(self.hparams.hidden_size, trainable_add=True)
self.post_lstm_add_norm_decoder = self.post_lstm_add_norm_encoder
# static enrichment and processing past LSTM
self.static_enrichment = GatedResidualNetwork(
input_size=self.hparams.hidden_size,
hidden_size=self.hparams.hidden_size,
output_size=self.hparams.hidden_size,
dropout=self.hparams.dropout,
context_size=self.hparams.hidden_size,
)
# attention for long-range processing
self.multihead_attn = InterpretableMultiHeadAttention(
d_model=self.hparams.hidden_size,
n_head=self.hparams.attention_head_size,
dropout=self.hparams.dropout)
self.post_attn_gate_norm = GateAddNorm(self.hparams.hidden_size,
dropout=self.hparams.dropout,
trainable_add=False)
self.pos_wise_ff = GatedResidualNetwork(self.hparams.hidden_size,
self.hparams.hidden_size,
self.hparams.hidden_size,
dropout=self.hparams.dropout)
# output processing -> no dropout at this late stage
self.pre_output_gate_norm = GateAddNorm(self.hparams.hidden_size,
dropout=None,
trainable_add=False)
if self.n_targets > 1: # if to run with multiple targets
self.output_layer = nn.ModuleList([
nn.Linear(self.hparams.hidden_size, output_size)
for output_size in self.hparams.output_size
])
else:
self.output_layer = nn.Linear(self.hparams.hidden_size,
self.hparams.output_size)
@classmethod
def from_dataset(
cls,
dataset: TimeSeriesDataSet,
allowed_encoder_known_variable_names: List[str] = None,
**kwargs,
):
"""
Create model from dataset.
Args:
dataset: timeseries dataset
allowed_encoder_known_variable_names: List of known variables that are allowed in encoder, defaults to all
**kwargs: additional arguments such as hyperparameters for model (see ``__init__()``)
Returns:
TemporalFusionTransformer
"""
# add maximum encoder length
new_kwargs = dict(max_encoder_length=dataset.max_encoder_length)
new_kwargs.update(
cls.deduce_default_output_parameters(dataset, kwargs,
QuantileLoss()))
# update defaults
new_kwargs.update(kwargs)
# create class and return
return super().from_dataset(dataset,
allowed_encoder_known_variable_names=
allowed_encoder_known_variable_names,
**new_kwargs)
def expand_static_context(self, context, timesteps):
"""
add time dimension to static context
"""
return context[:, None].expand(-1, timesteps, -1)
def get_attention_mask(self, encoder_lengths: torch.LongTensor,
decoder_length: int):
"""
Returns causal mask to apply for self-attention layer.
Args:
self_attn_inputs: Inputs to self attention layer to determine mask shape
"""
# indices to which is attended
attend_step = torch.arange(decoder_length, device=self.device)
# indices for which is predicted
predict_step = torch.arange(0, decoder_length,
device=self.device)[:, None]
# do not attend to steps to self or after prediction
# todo: there is potential value in attending to future forecasts if they are made with knowledge currently
# available
# one possibility is here to use a second attention layer for future attention (assuming different effects
# matter in the future than the past)
# or alternatively using the same layer but allowing forward attention - i.e. only masking out non-available
# data and self
decoder_mask = attend_step >= predict_step
# do not attend to steps where data is padded
encoder_mask = create_mask(encoder_lengths.max(), encoder_lengths)
# combine masks along attended time - first encoder and then decoder
mask = torch.cat(
(
encoder_mask.unsqueeze(1).expand(-1, decoder_length, -1),
decoder_mask.unsqueeze(0).expand(encoder_lengths.size(0), -1,
-1),
),
dim=2,
)
return mask
def forward(self, x: Dict[str, torch.Tensor]) -> Dict[str, torch.Tensor]:
"""
input dimensions: n_samples x time x variables
"""
encoder_lengths = x["encoder_lengths"]
decoder_lengths = x["decoder_lengths"]
x_cat = torch.cat([x["encoder_cat"], x["decoder_cat"]],
dim=1) # concatenate in time dimension
x_cont = torch.cat([x["encoder_cont"], x["decoder_cont"]],
dim=1) # concatenate in time dimension
timesteps = x_cont.size(1) # encode + decode length
max_encoder_length = int(encoder_lengths.max())
input_vectors = self.input_embeddings(x_cat)
input_vectors.update({
name: x_cont[..., idx].unsqueeze(-1)
for idx, name in enumerate(self.hparams.x_reals)
if name in self.reals
})
# Embedding and variable selection
if len(self.static_variables) > 0:
# static embeddings will be constant over entire batch
static_embedding = {
name: input_vectors[name][:, 0]
for name in self.static_variables
}
static_embedding, static_variable_selection = self.static_variable_selection(
static_embedding)
else:
static_embedding = torch.zeros(
(x_cont.size(0), self.hparams.hidden_size),
dtype=self.dtype,
device=self.device)
static_variable_selection = torch.zeros((x_cont.size(0), 0),
dtype=self.dtype,
device=self.device)
static_context_variable_selection = self.expand_static_context(
self.static_context_variable_selection(static_embedding),
timesteps)
embeddings_varying_encoder = {
name: input_vectors[name][:, :max_encoder_length]
for name in self.encoder_variables
}
embeddings_varying_encoder, encoder_sparse_weights = self.encoder_variable_selection(
embeddings_varying_encoder,
static_context_variable_selection[:, :max_encoder_length],
)
embeddings_varying_decoder = {
name: input_vectors[name][:, max_encoder_length:]
for name in self.decoder_variables # select decoder
}
embeddings_varying_decoder, decoder_sparse_weights = self.decoder_variable_selection(
embeddings_varying_decoder,
static_context_variable_selection[:, max_encoder_length:],
)
# LSTM
# calculate initial state
input_hidden = self.static_context_initial_hidden_lstm(
static_embedding).expand(self.hparams.lstm_layers, -1, -1)
input_cell = self.static_context_initial_cell_lstm(
static_embedding).expand(self.hparams.lstm_layers, -1, -1)
# run local encoder
encoder_output, (hidden,
cell) = self.lstm_encoder(embeddings_varying_encoder,
(input_hidden, input_cell),
lengths=encoder_lengths,
enforce_sorted=False)
# run local decoder
decoder_output, _ = self.lstm_decoder(
embeddings_varying_decoder,
(hidden, cell),
lengths=decoder_lengths,
enforce_sorted=False,
)
# skip connection over lstm
lstm_output_encoder = self.post_lstm_gate_encoder(encoder_output)
lstm_output_encoder = self.post_lstm_add_norm_encoder(
lstm_output_encoder, embeddings_varying_encoder)
lstm_output_decoder = self.post_lstm_gate_decoder(decoder_output)
lstm_output_decoder = self.post_lstm_add_norm_decoder(
lstm_output_decoder, embeddings_varying_decoder)
lstm_output = torch.cat([lstm_output_encoder, lstm_output_decoder],
dim=1)
# static enrichment
static_context_enrichment = self.static_context_enrichment(
static_embedding)
attn_input = self.static_enrichment(
lstm_output,
self.expand_static_context(static_context_enrichment, timesteps))
# Attention
attn_output, attn_output_weights = self.multihead_attn(
q=attn_input[:, max_encoder_length:], # query only for predictions
k=attn_input,
v=attn_input,
mask=self.get_attention_mask(encoder_lengths=encoder_lengths,
decoder_length=timesteps -
max_encoder_length),
)
# skip connection over attention
attn_output = self.post_attn_gate_norm(
attn_output, attn_input[:, max_encoder_length:])
output = self.pos_wise_ff(attn_output)
# skip connection over temporal fusion decoder (not LSTM decoder despite the LSTM output contains
# a skip from the variable selection network)
output = self.pre_output_gate_norm(output,
lstm_output[:, max_encoder_length:])
if self.n_targets > 1: # if to use multi-target architecture
output = [
output_layer(output) for output_layer in self.output_layer
]
else:
output = self.output_layer(output)
return dict(
prediction=output,
attention=attn_output_weights,
static_variables=static_variable_selection,
encoder_variables=encoder_sparse_weights,
decoder_variables=decoder_sparse_weights,
decoder_lengths=decoder_lengths,
encoder_lengths=encoder_lengths,
groups=x["groups"],
decoder_time_idx=x["decoder_time_idx"],
target_scale=x["target_scale"],
)
def on_fit_end(self):
if self.log_interval > 0:
self.log_embeddings()
def step(self, x, y, batch_idx):
"""
run at each step for training or validation
"""
# extract data and run model
log, out = super().step(x, y, batch_idx)
# calculate interpretations etc for latter logging
if self.log_interval > 0:
def detach(v):
if isinstance(v, torch.Tensor):
return v.detach()
elif isinstance(v,
(list, tuple)) and len(v) > 0 and isinstance(
v[0], torch.Tensor):
return [vp.detach() for vp in v]
else:
return v
detached_output = {
name: detach(out_part)
for name, out_part in out.items()
}
interpretation = self.interpret_output(
detached_output,
reduction="sum",
attention_prediction_horizon=
0, # attention only for first prediction horizon
)
log["interpretation"] = interpretation
return log, out
def epoch_end(self, outputs):
"""
run at epoch end for training or validation
"""
if self.log_interval > 0:
self.log_interpretation(outputs)
def interpret_output(
self,
out: Dict[str, torch.Tensor],
reduction: str = "none",
attention_prediction_horizon: int = 0,
attention_as_autocorrelation: bool = False,
) -> Dict[str, torch.Tensor]:
"""
interpret output of model
Args:
out: output as produced by ``forward()``
reduction: "none" for no averaging over batches, "sum" for summing attentions, "mean" for
normalizing by encode lengths
attention_prediction_horizon: which prediction horizon to use for attention
attention_as_autocorrelation: if to record attention as autocorrelation - this should be set to true in
case of ``reduction != "none"`` and differing prediction times of the samples. Defaults to False
Returns:
interpretations that can be plotted with ``plot_interpretation()``
"""
# histogram of decode and encode lengths
encoder_length_histogram = integer_histogram(
out["encoder_lengths"], min=0, max=self.hparams.max_encoder_length)
decoder_length_histogram = integer_histogram(
out["decoder_lengths"],
min=1,
max=out["decoder_variables"].size(1))
# mask where decoder and encoder where not applied when averaging variable selection weights
encoder_variables = out["encoder_variables"].squeeze(-2)
encode_mask = create_mask(encoder_variables.size(1),
out["encoder_lengths"])
encoder_variables = encoder_variables.masked_fill(
encode_mask.unsqueeze(-1), 0.0).sum(dim=1)
encoder_variables /= (out["encoder_lengths"].where(
out["encoder_lengths"] > 0,
torch.ones_like(out["encoder_lengths"])).unsqueeze(-1))
decoder_variables = out["decoder_variables"].squeeze(-2)
decode_mask = create_mask(decoder_variables.size(1),
out["decoder_lengths"])
decoder_variables = decoder_variables.masked_fill(
decode_mask.unsqueeze(-1), 0.0).sum(dim=1)
decoder_variables /= out["decoder_lengths"].unsqueeze(-1)
# static variables need no masking
static_variables = out["static_variables"].squeeze(1)
# attention is batch x time x heads x time_to_attend
# average over heads + only keep prediction attention and attention on observed timesteps
attention = out["attention"][:, attention_prediction_horizon, :, :
out["encoder_lengths"].max() +
attention_prediction_horizon].mean(1)
if reduction != "none": # if to average over batches
static_variables = static_variables.sum(dim=0)
encoder_variables = encoder_variables.sum(dim=0)
decoder_variables = decoder_variables.sum(dim=0)
# reorder attention or averaging
for i in range(
len(attention)): # very inefficient but does the trick
if 0 < out["encoder_lengths"][i] < attention.size(
1) - attention_prediction_horizon - 1:
relevant_attention = attention[
i, :out["encoder_lengths"][i] +
attention_prediction_horizon].clone()
if attention_as_autocorrelation:
relevant_attention = autocorrelation(
relevant_attention)
attention[
i, -out["encoder_lengths"][i] -
attention_prediction_horizon:] = relevant_attention
attention[i, :attention.size(1) -
out["encoder_lengths"][i] -
attention_prediction_horizon] = 0.0
elif attention_as_autocorrelation:
attention[i] = autocorrelation(attention[i])
attention = attention.sum(dim=0)
if reduction == "mean":
attention = attention / encoder_length_histogram[1:].flip(
0).cumsum(0).clamp(1)
attention = attention / attention.sum(-1).unsqueeze(
-1) # renormalize
elif reduction == "sum":
pass
else:
raise ValueError(f"Unknown reduction {reduction}")
attention = torch.zeros(
self.hparams.max_encoder_length + attention_prediction_horizon,
device=self.device).scatter(
dim=0,
index=torch.arange(
self.hparams.max_encoder_length +
attention_prediction_horizon - attention.size(-1),
self.hparams.max_encoder_length +
attention_prediction_horizon,
device=self.device,
),
src=attention,
)
else:
attention = attention / attention.sum(-1).unsqueeze(
-1) # renormalize
interpretation = dict(
attention=attention,
static_variables=static_variables,
encoder_variables=encoder_variables,
decoder_variables=decoder_variables,
encoder_length_histogram=encoder_length_histogram,
decoder_length_histogram=decoder_length_histogram,
)
return interpretation
def plot_prediction(
self,
x: Dict[str, torch.Tensor],
out: Dict[str, torch.Tensor],
idx: int,
plot_attention: bool = True,
add_loss_to_title: bool = False,
show_future_observed: bool = True,
ax=None,
) -> plt.Figure:
"""
Plot actuals vs prediction and attention
Args:
x (Dict[str, torch.Tensor]): network input
out (Dict[str, torch.Tensor]): network output
idx (int): sample index
plot_attention: if to plot attention on secondary axis
add_loss_to_title: if to add loss to title. Default to False.
show_future_observed: if to show actuals for future. Defaults to True.
ax: matplotlib axes to plot on
Returns:
plt.Figure: matplotlib figure
"""
# plot prediction as normal
fig = super().plot_prediction(
x,
out,
idx=idx,
add_loss_to_title=add_loss_to_title,
show_future_observed=show_future_observed,
ax=ax)
# add attention on secondary axis
if plot_attention:
interpretation = self.interpret_output(out)
for f in to_list(fig):
ax = f.axes[0]
ax2 = ax.twinx()
ax2.set_ylabel("Attention")
encoder_length = x["encoder_lengths"][idx]
ax2.plot(
torch.arange(-encoder_length, 0),
interpretation["attention"][
idx, :encoder_length].detach().cpu(),
alpha=0.2,
color="k",
)
f.tight_layout()
return fig
def plot_interpretation(
self, interpretation: Dict[str,
torch.Tensor]) -> Dict[str, plt.Figure]:
"""
Make figures that interpret model.
* Attention
* Variable selection weights / importances
Args:
interpretation: as obtained from ``interpret_output()``
Returns:
dictionary of matplotlib figures
"""
figs = {}
# attention
fig, ax = plt.subplots()
attention = interpretation["attention"].detach().cpu()
attention = attention / attention.sum(-1).unsqueeze(-1)
ax.plot(
np.arange(-self.hparams.max_encoder_length,
attention.size(0) - self.hparams.max_encoder_length),
attention)
ax.set_xlabel("Time index")
ax.set_ylabel("Attention")
ax.set_title("Attention")
figs["attention"] = fig
# variable selection
def make_selection_plot(title, values, labels):
fig, ax = plt.subplots(figsize=(7, len(values) * 0.25 + 2))
order = np.argsort(values)
values = values / values.sum(-1).unsqueeze(-1)
ax.barh(np.arange(len(values)),
values[order] * 100,
tick_label=np.asarray(labels)[order])
ax.set_title(title)
ax.set_xlabel("Importance in %")
plt.tight_layout()
return fig
figs["static_variables"] = make_selection_plot(
"Static variables importance",
interpretation["static_variables"].detach().cpu(),
self.static_variables)
figs["encoder_variables"] = make_selection_plot(
"Encoder variables importance",
interpretation["encoder_variables"].detach().cpu(),
self.encoder_variables)
figs["decoder_variables"] = make_selection_plot(
"Decoder variables importance",
interpretation["decoder_variables"].detach().cpu(),
self.decoder_variables)
return figs
def log_interpretation(self, outputs):
"""
Log interpretation metrics to tensorboard.
"""
# extract interpretations
interpretation = {
# use padded_stack because decoder length histogram can be of different length
name:
padded_stack([x["interpretation"][name].detach() for x in outputs],
side="right",
value=0).sum(0)
for name in outputs[0]["interpretation"].keys()
}
# normalize attention with length histogram squared to account for: 1. zeros in attention and
# 2. higher attention due to less values
attention_occurances = interpretation["encoder_length_histogram"][
1:].flip(0).cumsum(0).float()
attention_occurances = attention_occurances / attention_occurances.max(
)
attention_occurances = torch.cat(
[
attention_occurances,
torch.ones(
interpretation["attention"].size(0) -
attention_occurances.size(0),
dtype=attention_occurances.dtype,
device=attention_occurances.device,
),
],
dim=0,
)
interpretation["attention"] = interpretation[
"attention"] / attention_occurances.pow(2).clamp(1.0)
interpretation["attention"] = interpretation[
"attention"] / interpretation["attention"].sum()
figs = self.plot_interpretation(
interpretation) # make interpretation figures
label = ["val", "train"][self.training]
# log to tensorboard
for name, fig in figs.items():
self.logger.experiment.add_figure(
f"{label.capitalize()} {name} importance",
fig,
global_step=self.global_step)
# log lengths of encoder/decoder
for type in ["encoder", "decoder"]:
fig, ax = plt.subplots()
lengths = (padded_stack([
out["interpretation"][f"{type}_length_histogram"]
for out in outputs
]).sum(0).detach().cpu())
if type == "decoder":
start = 1
else:
start = 0
ax.plot(torch.arange(start, start + len(lengths)), lengths)
ax.set_xlabel(f"{type.capitalize()} length")
ax.set_ylabel("Number of samples")
ax.set_title(
f"{type.capitalize()} length distribution in {label} epoch")
self.logger.experiment.add_figure(
f"{label.capitalize()} {type} length distribution",
fig,
global_step=self.global_step)
def log_embeddings(self):
"""
Log embeddings to tensorboard
"""
for name, emb in self.input_embeddings.items():
labels = self.hparams.embedding_labels[name]
self.logger.experiment.add_embedding(
emb.weight.data.detach().cpu(),
metadata=labels,
tag=name,
global_step=self.global_step)
def __init__(
self,
cell_type: str = "LSTM",
hidden_size: int = 10,
rnn_layers: int = 2,
dropout: float = 0.1,
static_categoricals: List[str] = [],
static_reals: List[str] = [],
time_varying_categoricals_encoder: List[str] = [],
time_varying_categoricals_decoder: List[str] = [],
categorical_groups: Dict[str, List[str]] = {},
time_varying_reals_encoder: List[str] = [],
time_varying_reals_decoder: List[str] = [],
embedding_sizes: Dict[str, Tuple[int, int]] = {},
embedding_paddings: List[str] = [],
embedding_labels: Dict[str, np.ndarray] = {},
x_reals: List[str] = [],
x_categoricals: List[str] = [],
n_validation_samples: int = None,
n_plotting_samples: int = None,
target: Union[str, List[str]] = None,
loss: MultiHorizonMetric = None,
logging_metrics: nn.ModuleList = None,
**kwargs,
):
"""
Args:
cell_type (str, optional): Recurrent cell type ["LSTM", "GRU"]. Defaults to "LSTM".
hidden_size (int, optional): hidden recurrent size - the most important hyperparameter along with
``rnn_layers``. Defaults to 10.
rnn_layers (int, optional): Number of RNN layers - important hyperparameter. Defaults to 2.
dropout (float, optional): Dropout in RNN layers. Defaults to 0.1.
static_categoricals: integer of positions of static categorical variables
static_reals: integer of positions of static continuous variables
time_varying_categoricals_encoder: integer of positions of categorical variables for encoder
time_varying_categoricals_decoder: integer of positions of categorical variables for decoder
time_varying_reals_encoder: integer of positions of continuous variables for encoder
time_varying_reals_decoder: integer of positions of continuous variables for decoder
categorical_groups: dictionary where values
are list of categorical variables that are forming together a new categorical
variable which is the key in the dictionary
x_reals: order of continuous variables in tensor passed to forward function
x_categoricals: order of categorical variables in tensor passed to forward function
embedding_sizes: dictionary mapping (string) indices to tuple of number of categorical classes and
embedding size
embedding_paddings: list of indices for embeddings which transform the zero's embedding to a zero vector
embedding_labels: dictionary mapping (string) indices to list of categorical labels
n_validation_samples (int, optional): Number of samples to use for calculating validation metrics.
Defaults to None, i.e. no sampling at validation stage and using "mean" of distribution for logging
metrics calculation.
n_plotting_samples (int, optional): Number of samples to generate for plotting predictions
during training. Defaults to ``n_validation_samples`` if not None or 100 otherwise.
target (str, optional): Target variable or list of target variables. Defaults to None.
loss (DistributionLoss, optional): Distribution loss function. Keep in mind that each distribution
loss function might have specific requirements for target normalization.
Defaults to :py:class:`~pytorch_forecasting.metrics.NormalDistributionLoss`.
logging_metrics (nn.ModuleList, optional): Metrics to log during training.
Defaults to nn.ModuleList([SMAPE(), MAE(), RMSE(), MAPE(), MASE()]).
"""
# saves arguments in signature to `.hparams` attribute, mandatory call - do not skip this
self.save_hyperparameters()
# pass additional arguments to BaseModel.__init__, mandatory call - do not skip this
super().__init__(loss=loss, logging_metrics=logging_metrics, **kwargs)
assert set(self.encoder_variables) - set(to_list(target)) == set(
self.decoder_variables
), "Encoder and decoder variables have to be the same apart from target variable"
for targeti in to_list(target):
assert (
targeti in time_varying_reals_encoder
), f"target {targeti} has to be real" # todo: remove this restriction
self.embeddings = MultiEmbedding(
embedding_sizes=embedding_sizes,
embedding_paddings=embedding_paddings,
categorical_groups=categorical_groups,
x_categoricals=x_categoricals,
)
time_series_rnn = get_rnn(cell_type)
cont_size = len(self.reals)
cat_size = sum([size[1] for size in self.hparams.embedding_sizes.values()])
input_size = cont_size + cat_size
self.rnn = time_series_rnn(
input_size=input_size,
hidden_size=self.hparams.hidden_size,
num_layers=self.hparams.rnn_layers,
dropout=self.hparams.dropout if self.hparams.rnn_layers > 1 else 0,
batch_first=True,
)
# add linear layers for argument projects
if isinstance(target, str): # single target
self.output_projector = nn.Linear(self.hparams.hidden_size, 1)
else: # multi target
self.output_projector = nn.ModuleList([nn.Linear(self.hparams.hidden_size, 1) for _ in target])
def __init__(
self,
cell_type: str = "LSTM",
hidden_size: int = 10,
rnn_layers: int = 2,
dropout: float = 0.1,
static_categoricals: List[str] = [],
static_reals: List[str] = [],
time_varying_categoricals_encoder: List[str] = [],
time_varying_categoricals_decoder: List[str] = [],
categorical_groups: Dict[str, List[str]] = {},
time_varying_reals_encoder: List[str] = [],
time_varying_reals_decoder: List[str] = [],
embedding_sizes: Dict[str, Tuple[int, int]] = {},
embedding_paddings: List[str] = [],
embedding_labels: Dict[str, np.ndarray] = {},
x_reals: List[str] = [],
x_categoricals: List[str] = [],
n_validation_samples: int = None,
n_plotting_samples: int = None,
target: Union[str, List[str]] = None,
target_lags: Dict[str, List[int]] = {},
loss: DistributionLoss = None,
logging_metrics: nn.ModuleList = None,
**kwargs,
):
"""
DeepAR Network.
The code is based on the article `DeepAR: Probabilistic forecasting with autoregressive recurrent networks
<https://www.sciencedirect.com/science/article/pii/S0169207019301888>`_.
Args:
cell_type (str, optional): Recurrent cell type ["LSTM", "GRU"]. Defaults to "LSTM".
hidden_size (int, optional): hidden recurrent size - the most important hyperparameter along with
``rnn_layers``. Defaults to 10.
rnn_layers (int, optional): Number of RNN layers - important hyperparameter. Defaults to 2.
dropout (float, optional): Dropout in RNN layers. Defaults to 0.1.
static_categoricals: integer of positions of static categorical variables
static_reals: integer of positions of static continuous variables
time_varying_categoricals_encoder: integer of positions of categorical variables for encoder
time_varying_categoricals_decoder: integer of positions of categorical variables for decoder
time_varying_reals_encoder: integer of positions of continuous variables for encoder
time_varying_reals_decoder: integer of positions of continuous variables for decoder
categorical_groups: dictionary where values
are list of categorical variables that are forming together a new categorical
variable which is the key in the dictionary
x_reals: order of continuous variables in tensor passed to forward function
x_categoricals: order of categorical variables in tensor passed to forward function
embedding_sizes: dictionary mapping (string) indices to tuple of number of categorical classes and
embedding size
embedding_paddings: list of indices for embeddings which transform the zero's embedding to a zero vector
embedding_labels: dictionary mapping (string) indices to list of categorical labels
n_validation_samples (int, optional): Number of samples to use for calculating validation metrics.
Defaults to None, i.e. no sampling at validation stage and using "mean" of distribution for logging
metrics calculation.
n_plotting_samples (int, optional): Number of samples to generate for plotting predictions
during training. Defaults to ``n_validation_samples`` if not None or 100 otherwise.
target (str, optional): Target variable or list of target variables. Defaults to None.
target_lags (Dict[str, Dict[str, int]]): dictionary of target names mapped to list of time steps by
which the variable should be lagged.
Lags can be useful to indicate seasonality to the models. If you know the seasonalit(ies) of your data,
add at least the target variables with the corresponding lags to improve performance.
Defaults to no lags, i.e. an empty dictionary.
loss (DistributionLoss, optional): Distribution loss function. Keep in mind that each distribution
loss function might have specific requirements for target normalization.
Defaults to :py:class:`~pytorch_forecasting.metrics.NormalDistributionLoss`.
logging_metrics (nn.ModuleList, optional): Metrics to log during training.
Defaults to nn.ModuleList([SMAPE(), MAE(), RMSE(), MAPE(), MASE()]).
"""
if loss is None:
loss = NormalDistributionLoss()
if logging_metrics is None:
logging_metrics = nn.ModuleList(
[SMAPE(), MAE(), RMSE(),
MAPE(), MASE()])
if n_plotting_samples is None:
if n_validation_samples is None:
n_plotting_samples = n_validation_samples
else:
n_plotting_samples = 100
self.save_hyperparameters()
# store loss function separately as it is a module
super().__init__(loss=loss, logging_metrics=logging_metrics, **kwargs)
self.embeddings = MultiEmbedding(
embedding_sizes=embedding_sizes,
embedding_paddings=embedding_paddings,
categorical_groups=categorical_groups,
x_categoricals=x_categoricals,
)
lagged_target_names = [
l for lags in target_lags.values() for l in lags
]
assert set(self.encoder_variables) - set(
to_list(target)
) - set(lagged_target_names) == set(self.decoder_variables) - set(
lagged_target_names
), "Encoder and decoder variables have to be the same apart from target variable"
for targeti in to_list(target):
assert (
targeti in time_varying_reals_encoder
), f"target {targeti} has to be real" # todo: remove this restriction
assert (
isinstance(target, str) and isinstance(loss, DistributionLoss)
) or (
isinstance(target,
(list, tuple)) and isinstance(loss, MultiLoss) and
len(loss)
== len(target)
), "number of targets should be equivalent to number of loss metrics"
rnn_class = get_rnn(cell_type)
cont_size = len(self.reals)
cat_size = sum(
[size[1] for size in self.hparams.embedding_sizes.values()])
input_size = cont_size + cat_size
self.rnn = rnn_class(
input_size=input_size,
hidden_size=self.hparams.hidden_size,
num_layers=self.hparams.rnn_layers,
dropout=self.hparams.dropout if self.hparams.rnn_layers > 1 else 0,
batch_first=True,
)
# add linear layers for argument projects
if isinstance(target, str): # single target
self.distribution_projector = nn.Linear(
self.hparams.hidden_size,
len(self.loss.distribution_arguments))
else: # multi target
self.distribution_projector = nn.ModuleList([
nn.Linear(self.hparams.hidden_size, len(args))
for args in self.loss.distribution_arguments
])
