def main(conf):
train_set = PodcastMixDataloader(
csv_dir=conf["data"]["train_dir"],
sample_rate=conf["data"]["sample_rate"],
original_sample_rate=conf["data"]["original_sample_rate"],
segment=conf["data"]["segment"],
shuffle_tracks=True,
multi_speakers=conf["training"]["multi_speakers"])
val_set = PodcastMixDataloader(
csv_dir=conf["data"]["valid_dir"],
sample_rate=conf["data"]["sample_rate"],
original_sample_rate=conf["data"]["original_sample_rate"],
segment=conf["data"]["segment"],
shuffle_tracks=True,
multi_speakers=conf["training"]["multi_speakers"])
train_loader = DataLoader(train_set,
shuffle=True,
batch_size=conf["training"]["batch_size"],
num_workers=conf["training"]["num_workers"],
drop_last=True,
pin_memory=True)
val_loader = DataLoader(val_set,
shuffle=False,
batch_size=conf["training"]["batch_size"],
num_workers=conf["training"]["num_workers"],
drop_last=True,
pin_memory=True)
if (conf["model"]["name"] == "ConvTasNet"):
sys.path.append('ConvTasNet_model')
from conv_tasnet_norm import ConvTasNetNorm
conf["masknet"].update({"n_src": conf["data"]["n_src"]})
model = ConvTasNetNorm(**conf["filterbank"],
**conf["masknet"],
sample_rate=conf["data"]["sample_rate"])
loss_func = LogL2Time()
plugins = None
elif (conf["model"]["name"] == "UNet"):
# UNet with logl2 time loss and normalization inside model
sys.path.append('UNet_model')
from unet_model import UNet
model = UNet(conf["data"]["sample_rate"], conf["data"]["fft_size"],
conf["data"]["hop_size"], conf["data"]["window_size"],
conf["convolution"]["kernel_size"],
conf["convolution"]["stride"])
loss_func = LogL2Time()
plugins = DDPPlugin(find_unused_parameters=False)
optimizer = make_optimizer(model.parameters(), **conf["optim"])
if conf["training"]["half_lr"]:
scheduler = ReduceLROnPlateau(optimizer=optimizer,
factor=0.5,
patience=5)
# Just after instantiating, save the args. Easy loading in the future.
exp_dir = conf["model"]["name"] + "_model/" + conf["main_args"]["exp_dir"]
os.makedirs(exp_dir, exist_ok=True)
conf_path = os.path.join(exp_dir, "conf.yml")
with open(conf_path, "w") as outfile:
yaml.safe_dump(conf, outfile)
system = System(model=model,
loss_func=loss_func,
optimizer=optimizer,
train_loader=train_loader,
val_loader=val_loader,
scheduler=scheduler,
config=conf)
# Define callbacks
callbacks = []
checkpoint_dir = os.path.join(exp_dir, "checkpoints/")
checkpoint = ModelCheckpoint(checkpoint_dir,
monitor="val_loss",
mode="min",
save_top_k=5,
verbose=True)
callbacks.append(checkpoint)
if conf["training"]["early_stop"]:
callbacks.append(
EarlyStopping(monitor="val_loss",
mode="min",
patience=100,
verbose=True))
# Don't ask GPU if they are not available.
gpus = -1 if torch.cuda.is_available() else None
distributed_backend = "ddp" if torch.cuda.is_available() else None
trainer = pl.Trainer(
max_epochs=conf["training"]["epochs"],
callbacks=callbacks,
default_root_dir=exp_dir,
gpus=gpus,
distributed_backend=distributed_backend,
gradient_clip_val=5.0,
resume_from_checkpoint=conf["main_args"]["resume_from"],
precision=32,
plugins=plugins)
trainer.fit(system)
best_k = {k: v.item() for k, v in checkpoint.best_k_models.items()}
with open(os.path.join(exp_dir, "best_k_models.json"), "w") as f:
print(best_k, f)
json.dump(best_k, f, indent=0)
print(checkpoint.best_model_path)
state_dict = torch.load(checkpoint.best_model_path)
system.load_state_dict(state_dict=state_dict["state_dict"])
system.cpu()
to_save = system.model.serialize()
to_save.update(train_set.get_infos())
torch.save(to_save, os.path.join(exp_dir, "best_model.pth"))
def __call__(self, trial):
torch.cuda.empty_cache()
trial.set_user_attr('fold', self.fold)
kwargs = self.suggestions(trial)
start = datetime.now()
print(f"Training on fold {self.fold}")
train_ds, val_ds, input_cols, cond_cols = read(self.path, self.exp,
self.fold, self.subset)
cols = list(np.concatenate((input_cols, cond_cols, [self.target])))
train = train_ds.to_table(columns=cols).to_pandas()
val = val_ds.to_table(columns=cols).to_pandas()
# DataModule
dm = CTRPDataModule(train, val, input_cols, cond_cols, self.target,
kwargs['batch_size'])
del train, val
print(f"Time elapsed loading data: {datetime.now()-start}")
# Model
model = ConditionalNetwork(
n_blocks=kwargs['n_blocks'],
exp=self.exp,
inputs_sz=len(dm.input_cols),
conds_sz=len(dm.cond_cols),
inputs_emb_layers=kwargs['inputs_emb_layers'],
conds_emb_layers=kwargs['conds_emb_layers'],
film_layers=kwargs['film_layers'],
linear_layers=kwargs['linear_layers'],
ps_emb=kwargs['ps_emb'],
ps_film=kwargs['ps_film'],
ps_linear=kwargs['ps_linear'],
learning_rate=kwargs['learning_rate'],
weight_decay=kwargs['weight_decay'],
batch_size=kwargs['batch_size'])
# Callbacks
logger = TensorBoardLogger(
save_dir=self.logs,
version=f"trial{trial.number}_{self.exp}_fold_{self.fold}",
name='model_logs')
early_stop = EarlyStopping(monitor='val_r2',
min_delta=0.0001,
patience=12,
verbose=False,
mode='max')
# Trainer
trainer = Trainer(
default_root_dir=logger.
log_dir, #in order to avoid lr_find_temp.ckpt conflicts
auto_lr_find=False,
auto_scale_batch_size=False,
max_epochs=self.epochs,
gpus=self.gpu,
accelerator=self.accelerator,
logger=logger,
callbacks=[
PyTorchLightningPruningCallback(trial, monitor="val_r2"),
early_stop
],
flush_logs_every_n_steps=200,
precision=32,
profiler="simple",
deterministic=True)
trainer.fit(model, dm)
# save and clean up gpu
r2 = trainer.callback_metrics["val_r2"].item()
del dm, model, trainer
torch.cuda.empty_cache()
print("Completed fold {} in {}".format(self.fold,
str(datetime.now() - start)))
print(f'Fold val_r2: {r2}')
return r2
def main(hparams):
"""
Trains the Lightning model as specified in `hparams`
"""
# in order to make sure every model in multi-GPU have the same weight
seed = 1234567
torch.manual_seed(seed)
if torch.cuda.is_available():
torch.cuda.manual_seed(seed)
torch.cuda.manual_seed_all(seed) # if you are using multi-GPU.
np.random.seed(seed) # Numpy module.
random.seed(seed) # Python random module.
torch.backends.cudnn.benchmark = False
torch.backends.cudnn.deterministic = True
model = Lightning_Unet(hparams)
if COMPUTECANADA:
cur_path = Path(__file__).resolve().parent
default_root_dir = cur_path
checkpoint_file = Path(
__file__).resolve().parent / "checkpoint/{epoch}-{val_dice:.5f}"
if not os.path.exists(Path(__file__).resolve().parent / "checkpoint"):
os.mkdir(Path(__file__).resolve().parent / "checkpoint")
else:
default_root_dir = "./log"
if not os.path.exists(default_root_dir):
os.mkdir(default_root_dir)
checkpoint_file = "./log/checkpoint"
if not os.path.exists(checkpoint_file):
os.mkdir(checkpoint_file)
checkpoint_file = Path(checkpoint_file) / "{epoch}-{val_dice:.2f}"
# After training finishes, use best_model_path to retrieve the path to the best
# checkpoint file and best_model_score to retrieve its score.
checkpoint_callback = ModelCheckpoint(
filepath=checkpoint_file,
save_top_k=3,
verbose=True,
# monitor='val_dice',
mode='max',
prefix='',
save_weights_only=False,
# could realize to save the checkpoint several times in one epoch
period=-1,
)
early_stop_callback = EarlyStopping(
# monitor='val_loss',
min_delta=0.00,
patience=300,
strict=True,
verbose=False,
mode='max')
tb_logger = loggers.TensorBoardLogger(hparams.TensorBoardLogger)
trainer = Trainer(
gpus=hparams.gpus,
num_nodes=hparams.nodes,
distributed_backend='ddp',
# the next two can be combined to use, in a straight way
val_check_interval=0.5,
# check_val_every_n_epoch=3,
# log every k batches instead
row_log_interval=10,
# set the interval at which you want to log using this trainer flag.
log_save_interval=10,
checkpoint_callback=checkpoint_callback,
early_stop_callback=early_stop_callback,
callbacks=[LearningRateLogger()],
# runs 1 train, val, test batch and program ends
fast_dev_run=hparams.fast_dev_run,
default_root_dir=default_root_dir,
logger=tb_logger,
max_epochs=10000,
# this need to be string
# resume_from_checkpoint=str(Path(__file__).resolve().parent / "checkpoint" / hparams.checkpoint_file),
profiler=True,
auto_lr_find=False,
# simulate a larger batch size for gradient descent to provide a good estimate
# accumulate_grad_batches=4,
)
# if COMPUTECANADA:
# pickle.dumps(model)
# lr_finder = trainer.lr_find(model)
#
# # Plot with
# fig = lr_finder.plot(suggest=True)
# fig.show()
#
# # Pick point based on plot, or get suggestion
# new_lr = lr_finder.suggestion()
# print(f"recommend learning_rate: {new_lr}")
# model.hparams.learning_rate = new_lr
trainer.fit(model)
def test_early_stopping_mode_options():
with pytest.raises(MisconfigurationException, match="`mode` can be .* got unknown_option"):
EarlyStopping(mode="unknown_option")
def main(conf):
train_set = WhamDataset(
conf["data"]["train_dir"],
conf["data"]["task"],
sample_rate=conf["data"]["sample_rate"],
segment=conf["data"]["segment"],
nondefault_nsrc=conf["data"]["nondefault_nsrc"],
)
val_set = WhamDataset(
conf["data"]["valid_dir"],
conf["data"]["task"],
sample_rate=conf["data"]["sample_rate"],
nondefault_nsrc=conf["data"]["nondefault_nsrc"],
)
train_loader = DataLoader(
train_set,
shuffle=True,
batch_size=conf["training"]["batch_size"],
num_workers=conf["training"]["num_workers"],
drop_last=True,
)
val_loader = DataLoader(
val_set,
shuffle=False,
batch_size=conf["training"]["batch_size"],
num_workers=conf["training"]["num_workers"],
drop_last=True,
)
# Update number of source values (It depends on the task)
conf["masknet"].update({"n_src": train_set.n_src})
model = DPTNet(**conf["filterbank"], **conf["masknet"])
optimizer = make_optimizer(model.parameters(), **conf["optim"])
from asteroid.engine.schedulers import DPTNetScheduler
schedulers = {
"scheduler": DPTNetScheduler(
optimizer, len(train_loader) // conf["training"]["batch_size"], 64
),
"interval": "step",
}
# Just after instantiating, save the args. Easy loading in the future.
exp_dir = conf["main_args"]["exp_dir"]
os.makedirs(exp_dir, exist_ok=True)
conf_path = os.path.join(exp_dir, "conf.yml")
with open(conf_path, "w") as outfile:
yaml.safe_dump(conf, outfile)
# Define Loss function.
loss_func = PITLossWrapper(pairwise_neg_sisdr, pit_from="pw_mtx")
system = System(
model=model,
loss_func=loss_func,
optimizer=optimizer,
scheduler=schedulers,
train_loader=train_loader,
val_loader=val_loader,
config=conf,
)
# Define callbacks
callbacks = []
checkpoint_dir = os.path.join(exp_dir, "checkpoints/")
checkpoint = ModelCheckpoint(
checkpoint_dir, monitor="val_loss", mode="min", save_top_k=5, verbose=True
)
callbacks.append(checkpoint)
if conf["training"]["early_stop"]:
callbacks.append(EarlyStopping(monitor="val_loss", mode="min", patience=30, verbose=True))
# Don't ask GPU if they are not available.
gpus = -1 if torch.cuda.is_available() else None
distributed_backend = "ddp" if torch.cuda.is_available() else None
trainer = pl.Trainer(
max_epochs=conf["training"]["epochs"],
callbacks=callbacks,
default_root_dir=exp_dir,
gpus=gpus,
distributed_backend=distributed_backend,
gradient_clip_val=conf["training"]["gradient_clipping"],
)
trainer.fit(system)
best_k = {k: v.item() for k, v in checkpoint.best_k_models.items()}
with open(os.path.join(exp_dir, "best_k_models.json"), "w") as f:
json.dump(best_k, f, indent=0)
state_dict = torch.load(checkpoint.best_model_path)
system.load_state_dict(state_dict=state_dict["state_dict"])
system.cpu()
to_save = system.model.serialize()
to_save.update(train_set.get_infos())
torch.save(to_save, os.path.join(exp_dir, "best_model.pth"))
def main(conf):
train_dirs = [
conf["data"]["train_dir"].format(n_src)
for n_src in conf["masknet"]["n_srcs"]
]
valid_dirs = [
conf["data"]["valid_dir"].format(n_src)
for n_src in conf["masknet"]["n_srcs"]
]
train_set = Wsj0mixVariable(
json_dirs=train_dirs,
n_srcs=conf["masknet"]["n_srcs"],
sample_rate=conf["data"]["sample_rate"],
seglen=conf["data"]["seglen"],
minlen=conf["data"]["minlen"],
)
val_set = Wsj0mixVariable(
json_dirs=valid_dirs,
n_srcs=conf["masknet"]["n_srcs"],
sample_rate=conf["data"]["sample_rate"],
seglen=conf["data"]["seglen"],
minlen=conf["data"]["minlen"],
)
train_loader = DataLoader(
train_set,
shuffle=True,
batch_size=conf["training"]["batch_size"],
num_workers=conf["training"]["num_workers"],
drop_last=True,
collate_fn=_collate_fn,
)
val_loader = DataLoader(
val_set,
shuffle=False,
batch_size=conf["training"]["batch_size"],
num_workers=conf["training"]["num_workers"],
drop_last=True,
collate_fn=_collate_fn,
)
model, optimizer = make_model_and_optimizer(
conf, sample_rate=conf["data"]["sample_rate"])
scheduler = []
if conf["training"]["half_lr"]:
scheduler.append(
ReduceLROnPlateau(optimizer=optimizer, factor=0.5, patience=5))
if conf["training"]["lr_decay"]:
scheduler.append(ExponentialLR(optimizer=optimizer, gamma=0.99))
exp_dir = conf["main_args"]["exp_dir"]
os.makedirs(exp_dir, exist_ok=True)
conf_path = os.path.join(exp_dir, "conf.yml")
with open(conf_path, "w") as outfile:
yaml.safe_dump(conf, outfile)
loss_func = WeightedPITLoss(n_srcs=conf["masknet"]["n_srcs"],
lamb=conf["loss"]["lambda"])
# Put together in System
system = VarSpkrSystem(
model=model,
loss_func=loss_func,
optimizer=optimizer,
train_loader=train_loader,
val_loader=val_loader,
scheduler=scheduler,
config=conf,
)
# Define callbacks
callbacks = []
checkpoint_dir = os.path.join(exp_dir, "checkpoints/")
checkpoint = ModelCheckpoint(
dirpath=checkpoint_dir,
filename="{epoch}-{step}",
monitor="avg_sdr",
mode="max",
save_top_k=5,
verbose=True,
)
callbacks.append(checkpoint)
if conf["training"]["early_stop"]:
callbacks.append(
EarlyStopping(monitor="avg_sdr",
mode="max",
patience=30,
verbose=True))
# Don't ask GPU if they are not available.
gpus = -1 if torch.cuda.is_available() else None
distributed_backend = "dp" if torch.cuda.is_available() else None
# Train model
trainer = pl.Trainer(
max_epochs=conf["training"]["epochs"],
callbacks=callbacks,
default_root_dir=exp_dir,
gpus=gpus,
distributed_backend=distributed_backend,
limit_train_batches=1.0, # Useful for fast experiment
gradient_clip_val=200,
resume_from_checkpoint=conf["main_args"]["resume_from"],
)
trainer.fit(system)
best_k = {k: v.item() for k, v in checkpoint.best_k_models.items()}
with open(os.path.join(exp_dir, "best_k_models.json"), "w") as f:
json.dump(best_k, f, indent=0)
# Save last model for convenience
torch.save(system.model.state_dict(),
os.path.join(exp_dir, "final_model.pth"))
return
self._epoch_end()
def on_train_end(self) -> None:
assert self.trainer.current_epoch == self.expected_end_epoch, 'Early Stopping Failed'
_ES_CHECK = dict(check_on_train_epoch_end=True)
_ES_CHECK_P3 = dict(patience=3, check_on_train_epoch_end=True)
_NO_WIN = dict(marks=RunIf(skip_windows=True))
@pytest.mark.parametrize(
"callbacks, expected_stop_epoch, check_on_train_epoch_end, accelerator, num_processes",
[
([EarlyStopping('abc'), EarlyStopping('cba', patience=3)], 3, False, None, 1),
([EarlyStopping('cba', patience=3), EarlyStopping('abc')], 3, False, None, 1),
pytest.param([EarlyStopping('abc'), EarlyStopping('cba', patience=3)], 3, False, 'ddp_cpu', 2, **_NO_WIN),
pytest.param([EarlyStopping('cba', patience=3), EarlyStopping('abc')], 3, False, 'ddp_cpu', 2, **_NO_WIN),
([EarlyStopping('abc', **_ES_CHECK), EarlyStopping('cba', **_ES_CHECK_P3)], 3, True, None, 1),
([EarlyStopping('cba', **_ES_CHECK_P3), EarlyStopping('abc', **_ES_CHECK)], 3, True, None, 1),
pytest.param([EarlyStopping('abc', **_ES_CHECK),
EarlyStopping('cba', **_ES_CHECK_P3)], 3, True, 'ddp_cpu', 2, **_NO_WIN),
pytest.param([EarlyStopping('cba', **_ES_CHECK_P3),
EarlyStopping('abc', **_ES_CHECK)], 3, True, 'ddp_cpu', 2, **_NO_WIN),
],
)
def test_multiple_early_stopping_callbacks(
tmpdir,
callbacks: List[EarlyStopping],
expected_stop_epoch: int,
def train(cfg, model, transforms, train_data, val_data):
gc.collect()
pl.seed_everything(cfg.seed)
# init logger
loggers = []
# init logger
if cfg.logger == 'csv':
logger = pl.loggers.CSVLogger(save_dir='logs/', name=cfg.model_type)
loggers.append(logger)
elif cfg.logger == 'tensorboard':
logger = pl.loggers.TensorBoardLogger('tb_logs', name=cfg.model_type)
loggers.append(logger)
elif cfg.logger == 'wandb':
logger = pl.loggers.WandbLogger(project='Plant Pathology 2021 - FGVC8')
loggers.append(logger)
elif cfg.logger == 'all':
logger1 = pl.loggers.CSVLogger(save_dir='logs/', name=cfg.model_type)
logger2 = pl.loggers.TensorBoardLogger('tb_logs', name=cfg.model_type)
logger3 = pl.loggers.WandbLogger(
project='Plant Pathology 2021 - FGVC8')
loggers.append(*[logger1, logger2, logger3])
else:
pass
# init callbacks
ckpt_min_loss = ModelCheckpoint(
monitor='total_loss',
save_top_k=cfg.ckpt_save_top_k,
mode='min',
save_last=cfg.ckpt_save_last,
filename=os.path.join(
"checkpoint", f"min-loss-fold={cfg.fold_i}" + "-{epoch}-{valid_loss:.4f}-{valid_f1:.4f}"),
)
ckpt2_max_f1 = ModelCheckpoint(
monitor='valid_five_f1',
save_top_k=cfg.ckpt_save_top_k,
mode='max',
save_last=cfg.ckpt_save_last,
filename=os.path.join(
"checkpoint", f"best-f1-fold={cfg.fold_i}" + "-{epoch}-{valid_loss:.4f}-{valid_f1:.4f}"),
)
early = EarlyStopping(
monitor='valid_five_f1',
patience=cfg.early_patience,
mode='max',
verbose=True
)
lr_monitor = LearningRateMonitor('step')
swa = pl.callbacks.StochasticWeightAveraging()
# all callbacks
callbacks = [ckpt_min_loss, ckpt2_max_f1, early, lr_monitor, swa]
# init model
if cfg.two_head:
model = LitPlantModule2(cfg)
else:
model = LitPlantModule(cfg)
# init dataloaders
dataloaders = generate_dataloaders(cfg, train_data, val_data, transforms)
# init trainer
trainer = pl.Trainer(
fast_dev_run=False,
gpus=1,
callbacks=callbacks,
logger=loggers,
min_epochs=cfg.min_epochs,
max_epochs=cfg.max_epochs,
val_check_interval=0.25,
progress_bar_refresh_rate=1,
weights_summary='top',
precision=cfg.precision,
# limit_train_batches=1,
# limit_val_batches=1,
gradient_clip_val=cfg.gradient_clip_val,
accumulate_grad_batches=int(64 / cfg.batch_size)
)
trainer.fit(model=model,
train_dataloader=dataloaders['train'],
val_dataloaders=dataloaders['val'])
# print(self.retriever.predict('I am beautiful lady?', ['You are a pretty girl',
# 'apple is tasty',
# 'He is a handsome boy'], True))
if __name__ == '__main__':
encoder_question = BertEncoder(bert_question, max_question_len_global)
encoder_paragarph = BertEncoder(bert_paragraph, max_paragraph_len_global)
ret = Retriver(encoder_question, encoder_paragarph, tokenizer)
os.makedirs('out', exist_ok=True)
checkpoint_callback = ModelCheckpoint(
filepath=
'out/largebatch-crossentropy-{epoch}-{val_loss:.2f}-{val_acc:.2f}',
save_top_k=10,
verbose=True,
monitor='val_acc',
mode='max')
early_stopping = EarlyStopping('val_acc', mode='max')
trainer = pl.Trainer(gpus=8,
distributed_backend='dp',
val_check_interval=0.1,
min_epochs=1,
checkpoint_callback=checkpoint_callback,
early_stop_callback=early_stopping)
ret_trainee = RetriverTrainer(ret)
trainer.fit(ret_trainee)
def main():
logger = logging.getLogger(__name__)
start_time = datetime.datetime.now()
model_args, training_args = load_or_parse_args((ModelArgs, TrainingArgs), verbose=True)
train_orig_df, label_enc = load_train_dataframe(training_args.data_train,
min_class_samples=training_args.min_class_samples)
# assert training_args.test_size % training_args.batch_size == 0, "Test size should be multiple of batch size"
# TODO: split DFs once and keep those on the disk. Reload label_enc from disk on resume.
train_df, valid_df = train_test_split(train_orig_df, test_size=training_args.test_size,
stratify=train_orig_df.landmark_id, random_state=SEED)
num_classes = train_df.landmark_id.nunique() if training_args.min_class_samples is None else len(label_enc.classes_)
logger.info(f'Num classes train: {num_classes}')
logger.info(f'Num classes valid: {valid_df.landmark_id.nunique()}')
# save checkpoints
training_args.checkpoints_dir.mkdir(exist_ok=True, parents=True)
joblib.dump(label_enc, filename=training_args.checkpoints_dir / training_args.label_encoder_filename)
logger.info(f'Persisted LabelEncoder to {training_args.label_encoder_filename}')
save_config_checkpoint(training_args.checkpoints_dir)
logger.info('Initializing the model')
model = LandmarkModel(model_name=model_args.model_name,
n_classes=num_classes,
loss_module=model_args.loss_module,
pooling_name=model_args.pooling_name,
args_pooling=model_args.args_pooling,
normalize=model_args.normalize,
use_fc=model_args.use_fc,
fc_dim=model_args.fc_dim,
dropout=model_args.dropout
)
logger.info("Model params:")
logger.info(pformat(model_args))
lit_module = LandmarksPLBaseModule(hparams={**model_args.__dict__, **training_args.__dict__},
model=model,
optimizer=training_args.optimizer,
loss=model_args.loss_module)
# init data
dm = LandmarksDataModule(train_df, valid_df,
hparams=training_args,
image_dir=training_args.data_path,
batch_size=training_args.batch_size,
num_workers=training_args.num_workers,
use_weighted_sampler=training_args.use_weighted_sampler
)
# train
dt_str = datetime.datetime.now().strftime("%y%m%d_%H-%M")
wandb_logger = WandbLogger(name=f'{model_args.model_name.capitalize()}_GeM_ArcFace_{dt_str}',
save_dir='logs/',
project='landmarks')
checkpoint_callback = ModelCheckpoint(monitor='val_acc',
mode='max',
save_top_k=2,
save_last=True,
verbose=True)
# hack around to change only filename, not provide the full path (which is generated by W&B)
checkpoint_callback.filename = '{epoch}-{val_acc:.3f}'
early_stopping_callback = EarlyStopping('val_acc', verbose=True, mode='max')
trainer = pl.Trainer(gpus=training_args.gpus,
logger=wandb_logger,
max_epochs=training_args.n_epochs,
val_check_interval=training_args.val_check_interval,
checkpoint_callback=checkpoint_callback,
progress_bar_refresh_rate=100,
resume_from_checkpoint=training_args.resume_checkpoint,
gradient_clip_val=training_args.gradient_clip_val,
accumulate_grad_batches=training_args.accumulate_grad_batches,
early_stop_callback=early_stopping_callback,
# fast_dev_run=True,
# limit_train_batches=5,
# limit_val_batches=5
)
trainer.fit(lit_module, datamodule=dm)
try:
training_args.checkpoints_dir = get_wandb_logger_checkpoints_path(wandb_logger)
logger.info(f'Saving checkpoints to the current directory: {training_args.checkpoints_dir}')
except:
logger.warning(f'Unable to get current checkpoints directory, using default one: '
f'{training_args.checkpoints_dir}')
# save checkpoints (saved twice - in default directory above and in wandb current run folder)
training_args.checkpoints_dir.mkdir(exist_ok=True, parents=True)
joblib.dump(label_enc, filename=training_args.checkpoints_dir / training_args.label_encoder_filename)
logger.info(f'Persisted LabelEncoder to {training_args.label_encoder_filename}')
save_config_checkpoint(training_args.checkpoints_dir)
end_time = datetime.datetime.now()
logger.info('Duration: {}'.format(end_time - start_time))
def main(hparams) -> None:
"""
Main training routine specific for this project
:param hparams:
"""
set_seed(hparams.seed)
# ------------------------
# 1 INIT LIGHTNING MODEL AND DATA
# ------------------------
model = Classifier(hparams)
# ------------------------
# 2 INIT EARLY STOPPING
# ------------------------
early_stop_callback = EarlyStopping(
monitor=hparams.monitor,
min_delta=0.0,
patience=hparams.patience,
verbose=True,
mode=hparams.metric_mode,
)
# ------------------------
# 3 INIT LOGGERS
# ------------------------
# Tensorboard Callback
tb_logger = TensorBoardLogger(
save_dir="experiments/",
version="version_" + datetime.now().strftime("%d-%m-%Y--%H-%M-%S"),
name="",
)
# Model Checkpoint Callback
ckpt_path = os.path.join(
"experiments/", tb_logger.version, "checkpoints",
)
# --------------------------------
# 4 INIT MODEL CHECKPOINT CALLBACK
# -------------------------------
checkpoint_callback = ModelCheckpoint(
filepath=ckpt_path,
save_top_k=hparams.save_top_k,
verbose=True,
monitor=hparams.monitor,
period=1,
mode=hparams.metric_mode,
save_weights_only=True
)
# ------------------------
# 5 INIT TRAINER
# ------------------------
trainer = Trainer(
logger=tb_logger,
checkpoint_callback=True,
# callbacks=early_stop_callback,
gradient_clip_val=1.0,
gpus=hparams.gpus,
log_gpu_memory="all",
deterministic=True,
check_val_every_n_epoch=1,
fast_dev_run=hparams.fast_dev_run,
accumulate_grad_batches=hparams.accumulate_grad_batches,
max_epochs=hparams.max_epochs,
min_epochs=hparams.min_epochs,
# val_check_interval=hparams.val_check_interval,
# distributed_backend="None",
)
# ------------------------
# 6 START TRAINING
# ------------------------
trainer.fit(model, model.data)
def test_callbacks_and_logger_not_called_with_fastdevrun(tmpdir, fast_dev_run):
"""Test that ModelCheckpoint, EarlyStopping and Logger are turned off with fast_dev_run."""
class FastDevRunModel(BoringModel):
def __init__(self):
super().__init__()
self.training_step_call_count = 0
self.training_epoch_end_call_count = 0
self.validation_step_call_count = 0
self.validation_epoch_end_call_count = 0
self.test_step_call_count = 0
def training_step(self, batch, batch_idx):
self.log("some_metric", torch.tensor(7.0))
self.logger.experiment.dummy_log("some_distribution",
torch.randn(7) + batch_idx)
self.training_step_call_count += 1
return super().training_step(batch, batch_idx)
def training_epoch_end(self, outputs):
self.training_epoch_end_call_count += 1
super().training_epoch_end(outputs)
def validation_step(self, batch, batch_idx):
self.validation_step_call_count += 1
return super().validation_step(batch, batch_idx)
def validation_epoch_end(self, outputs):
self.validation_epoch_end_call_count += 1
super().validation_epoch_end(outputs)
def test_step(self, batch, batch_idx):
self.test_step_call_count += 1
return super().test_step(batch, batch_idx)
checkpoint_callback = ModelCheckpoint()
checkpoint_callback.save_checkpoint = Mock()
early_stopping_callback = EarlyStopping(monitor="foo")
early_stopping_callback._evaluate_stopping_criteria = Mock()
trainer_config = dict(
default_root_dir=tmpdir,
fast_dev_run=fast_dev_run,
val_check_interval=2,
logger=True,
log_every_n_steps=1,
callbacks=[checkpoint_callback, early_stopping_callback],
)
def _make_fast_dev_run_assertions(trainer, model):
# check the call count for train/val/test step/epoch
assert model.training_step_call_count == fast_dev_run
assert model.training_epoch_end_call_count == 1
assert model.validation_step_call_count == 0 if model.validation_step is None else fast_dev_run
assert model.validation_epoch_end_call_count == 0 if model.validation_step is None else 1
assert model.test_step_call_count == fast_dev_run
# check trainer arguments
assert trainer.max_steps == fast_dev_run
assert trainer.num_sanity_val_steps == 0
assert trainer.max_epochs == 1
assert trainer.val_check_interval == 1.0
assert trainer.check_val_every_n_epoch == 1
# there should be no logger with fast_dev_run
assert isinstance(trainer.logger, DummyLogger)
# checkpoint callback should not have been called with fast_dev_run
assert trainer.checkpoint_callback == checkpoint_callback
checkpoint_callback.save_checkpoint.assert_not_called()
assert not os.path.exists(checkpoint_callback.dirpath)
# early stopping should not have been called with fast_dev_run
assert trainer.early_stopping_callback == early_stopping_callback
early_stopping_callback._evaluate_stopping_criteria.assert_not_called()
train_val_step_model = FastDevRunModel()
trainer = Trainer(**trainer_config)
trainer.fit(train_val_step_model)
trainer.test(train_val_step_model)
assert trainer.state.finished, f"Training failed with {trainer.state}"
_make_fast_dev_run_assertions(trainer, train_val_step_model)
# -----------------------
# also called once with no val step
# -----------------------
train_step_only_model = FastDevRunModel()
train_step_only_model.validation_step = None
trainer = Trainer(**trainer_config)
trainer.fit(train_step_only_model)
trainer.test(train_step_only_model)
assert trainer.state.finished, f"Training failed with {trainer.state}"
_make_fast_dev_run_assertions(trainer, train_step_only_model)
'num_features': training_input.shape[3],
'num_timesteps_input': num_timesteps_input,
'num_timesteps_output': num_timesteps_output,
'gcn_type': gcn_type,
'gcn_package': gcn_package,
'gcn_partition': gcn_partition
})
net = WrapperNet(hparams)
net.init_data(training_input, training_target, val_input, val_target,
test_input, test_target)
net.init_graph(A, edge_index, edge_weight)
early_stop_callback = EarlyStopping(patience=early_stop_rounds)
logger = TestTubeLogger(save_dir=log_dir, name=log_name)
trainer = pl.Trainer(gpus=gpus,
max_epochs=epochs,
distributed_backend=backend,
early_stop_callback=early_stop_callback,
logger=logger,
track_grad_norm=2)
trainer.fit(net)
print('Training time {}'.format(time.time() - start_time))
# # Currently, there are some issues for testing under ddp setting, so switch it to dp setting
# # change the below line with your own checkpoint path
# net = WrapperNet.load_from_checkpoint('logs/ddp_exp/version_1/checkpoints/_ckpt_epoch_2.ckpt')
def main(conf):
train_set = WhamDataset(conf['data']['train_dir'],
conf['data']['task'],
sample_rate=conf['data']['sample_rate'],
nondefault_nsrc=conf['data']['nondefault_nsrc'])
val_set = WhamDataset(conf['data']['valid_dir'],
conf['data']['task'],
sample_rate=conf['data']['sample_rate'],
nondefault_nsrc=conf['data']['nondefault_nsrc'])
train_loader = DataLoader(train_set,
shuffle=True,
batch_size=conf['training']['batch_size'],
num_workers=conf['training']['num_workers'],
drop_last=True)
val_loader = DataLoader(val_set,
shuffle=False,
batch_size=conf['training']['batch_size'],
num_workers=conf['training']['num_workers'],
drop_last=True)
# Update number of source values (It depends on the task)
conf['masknet'].update({'n_src': train_set.n_src})
# Define model and optimizer
model = ConvTasNet(**conf['filterbank'], **conf['masknet'])
optimizer = make_optimizer(model.parameters(), **conf['optim'])
# Define scheduler
scheduler = None
if conf['training']['half_lr']:
scheduler = ReduceLROnPlateau(optimizer=optimizer,
factor=0.5,
patience=5)
# Just after instantiating, save the args. Easy loading in the future.
exp_dir = conf['main_args']['exp_dir']
os.makedirs(exp_dir, exist_ok=True)
conf_path = os.path.join(exp_dir, 'conf.yml')
with open(conf_path, 'w') as outfile:
yaml.safe_dump(conf, outfile)
# Define Loss function.
loss_func = PITLossWrapper(pairwise_neg_sisdr, pit_from='pw_mtx')
system = System(model=model,
loss_func=loss_func,
optimizer=optimizer,
train_loader=train_loader,
val_loader=val_loader,
scheduler=scheduler,
config=conf)
# Define callbacks
checkpoint_dir = os.path.join(exp_dir, 'checkpoints/')
checkpoint = ModelCheckpoint(checkpoint_dir,
monitor='val_loss',
mode='min',
save_top_k=5,
verbose=1)
early_stopping = False
if conf['training']['early_stop']:
early_stopping = EarlyStopping(monitor='val_loss',
patience=10,
verbose=1)
# Don't ask GPU if they are not available.
if not torch.cuda.is_available():
print('No available GPU were found, set gpus to None')
conf['main_args']['gpus'] = None
trainer = pl.Trainer(
max_epochs=conf['training']['epochs'],
checkpoint_callback=checkpoint,
early_stop_callback=early_stopping,
default_save_path=exp_dir,
gpus=conf['main_args']['gpus'],
distributed_backend='dp',
train_percent_check=1.0, # Useful for fast experiment
gradient_clip_val=5.)
trainer.fit(system)
best_k = {k: v.item() for k, v in checkpoint.best_k_models.items()}
with open(os.path.join(exp_dir, "best_k_models.json"), "w") as f:
json.dump(best_k, f, indent=0)
# Save best model (next PL version will make this easier)
best_path = [b for b, v in best_k.items() if v == min(best_k.values())][0]
state_dict = torch.load(best_path)
system.load_state_dict(state_dict=state_dict['state_dict'])
system.cpu()
to_save = system.model.serialize()
to_save.update(train_set.get_infos())
torch.save(to_save, os.path.join(exp_dir, 'best_model.pth'))
def validation_epoch_end(self, outputs):
losses = [8, 4, 2, 3, 4, 5, 8, 10]
val_loss = losses[self.current_epoch]
self.log('abc', torch.tensor(val_loss))
self.log('cba', torch.tensor(0))
def on_train_end(self) -> None:
assert self.trainer.current_epoch == self.expected_end_epoch, 'Early Stopping Failed'
@pytest.mark.parametrize(
"callbacks, expected_stop_epoch, accelerator, num_processes",
[
([
EarlyStopping(monitor='abc'),
EarlyStopping(monitor='cba', patience=3)
], 3, None, 1),
([
EarlyStopping(monitor='cba', patience=3),
EarlyStopping(monitor='abc')
], 3, None, 1),
pytest.param([
EarlyStopping(monitor='abc'),
EarlyStopping(monitor='cba', patience=3)
],
3,
'ddp_cpu',
2,
marks=RunIf(skip_windows=True)),
pytest.param([
def main(conf):
train_set = WhamDataset(conf['data']['train_dir'], conf['data']['task'],
sample_rate=conf['data']['sample_rate'],
nondefault_nsrc=conf['data']['nondefault_nsrc'])
val_set = WhamDataset(conf['data']['valid_dir'], conf['data']['task'],
sample_rate=conf['data']['sample_rate'],
nondefault_nsrc=conf['data']['nondefault_nsrc'])
train_loader = DataLoader(train_set, shuffle=True,
batch_size=conf['data']['batch_size'],
num_workers=conf['data']['num_workers'],
drop_last=True)
val_loader = DataLoader(val_set, shuffle=True,
batch_size=conf['data']['batch_size'],
num_workers=conf['data']['num_workers'],
drop_last=True)
# Update number of source values (It depends on the task)
conf['masknet'].update({'n_src': train_set.n_src})
# Define model and optimizer in a local function (defined in the recipe).
# Two advantages to this : re-instantiating the model and optimizer
# for retraining and evaluating is straight-forward.
model, optimizer = make_model_and_optimizer(conf)
# Define scheduler
scheduler = None
if conf['training']['half_lr']:
scheduler = ReduceLROnPlateau(optimizer=optimizer, factor=0.5,
patience=5)
# Just after instantiating, save the args. Easy loading in the future.
exp_dir = conf['main_args']['exp_dir']
os.makedirs(exp_dir, exist_ok=True)
conf_path = os.path.join(exp_dir, 'conf.yml')
with open(conf_path, 'w') as outfile:
yaml.safe_dump(conf, outfile)
# Define Loss function.
loss_func = PITLossWrapper(pairwise_neg_sisdr, mode='pairwise')
system = System(model=model, loss_func=loss_func, optimizer=optimizer,
train_loader=train_loader, val_loader=val_loader,
scheduler=scheduler, config=conf)
# Define callbacks
checkpoint_dir = os.path.join(exp_dir, 'checkpoints/')
checkpoint = ModelCheckpoint(checkpoint_dir, monitor='val_loss',
mode='min', save_top_k=5, verbose=1)
early_stopping = False
if conf['training']['early_stop']:
early_stopping = EarlyStopping(monitor='val_loss', patience=10,
verbose=1)
# Don't ask GPU if they are not available.
if not torch.cuda.is_available():
print('No available GPU were found, set gpus to None')
conf['main_args']['gpus'] = None
trainer = pl.Trainer(max_nb_epochs=conf['training']['epochs'],
checkpoint_callback=checkpoint,
early_stop_callback=early_stopping,
default_save_path=exp_dir,
gpus=conf['main_args']['gpus'],
distributed_backend='dp',
train_percent_check=1.0, # Useful for fast experiment
gradient_clip_val=5.)
trainer.fit(system)
with open(os.path.join(exp_dir, "best_k_models.json"), "w") as f:
json.dump(checkpoint.best_k_models, f, indent=0)
)
validation = TimeSeriesDataSet.from_dataset(training,
data,
min_prediction_idx=training_cutoff)
batch_size = 128
train_dataloader = training.to_dataloader(train=True,
batch_size=batch_size,
num_workers=2)
val_dataloader = validation.to_dataloader(train=False,
batch_size=batch_size,
num_workers=2)
early_stop_callback = EarlyStopping(monitor="val_loss",
min_delta=1e-4,
patience=10,
verbose=False,
mode="min")
trainer = pl.Trainer(
max_epochs=100,
gpus=0,
weights_summary="top",
gradient_clip_val=0.1,
early_stop_callback=early_stop_callback,
limit_train_batches=15,
# limit_val_batches=1,
# fast_dev_run=True,
# logger=logger,
# profiler=True,
)
return self._val_dataloader
if __name__ == "__main__":
parser = ArgumentParser()
parser.add_argument(
"--data-dir",
type=str,
required=True
)
args = parser.parse_args()
early_stop_callback = EarlyStopping(
monitor="val_loss",
min_delta=0.0,
patience=1,
verbose=True,
mode="min",
)
trainer = pl.Trainer(
gpus=1,
early_stop_callback=early_stop_callback,
# train_percent_check=0.001,
# val_percent_check=0.001,
# max_nb_epochs=1
)
model = Model(args)
trainer.fit(model)
def main(hparams):
neptune_logger = NeptuneLogger(
api_key=
"eyJhcGlfYWRkcmVzcyI6Imh0dHBzOi8vdWkubmVwdHVuZS5haSIsImFwaV91cmwiOiJodHRwczovL3VpLm5lcHR1bmUuYWkiLCJhcGlfa2V5IjoiN2I2ZWM0NmQtNjg0NS00ZjM5LTkzNTItN2I4Nzc0YTUzMmM0In0=",
project_name="hirune924/kaggle-PANDA",
close_after_fit=False,
upload_source_files=['*.py', '*.ipynb'],
params=vars(hparams),
experiment_name=hparams.experiment_name, # Optional,
#tags=["pytorch-lightning", "mlp"] # Optional,
)
'''
comet_logger = CometLogger(
api_key="QCxbRVX2qhQj1t0ajIZl2nk2c",
workspace='hirune924', # Optional
save_dir='.', # Optional
project_name="kaggle-panda", # Optional
#rest_api_key=os.environ.get('COMET_REST_API_KEY'), # Optional
#experiment_name='default' # Optional
)'''
tb_logger = loggers.TensorBoardLogger(save_dir=hparams.log_dir,
name='default',
version=None)
logger_list = [tb_logger, neptune_logger
] if hparams.distributed_backend != 'ddp' else tb_logger
checkpoint_callback = ModelCheckpoint(filepath=os.path.join(
hparams.log_dir, '{epoch}-{avg_val_loss}-{val_qwk}'),
save_top_k=10,
verbose=True,
monitor='avg_val_loss',
mode='min',
save_weights_only=True,
period=1)
# default used by the Trainer
early_stop_callback = EarlyStopping(monitor='avg_val_loss',
patience=20,
min_delta=0.0,
strict=True,
verbose=True,
mode='min')
seg_model = get_seg_model_from_name(model_name=hparams.seg_model_name,
in_channels=5,
num_classes=2,
pretrained=True)
seg_ckpt_pth = glob.glob(
os.path.join(hparams.seg_ckpt_dir,
'fold' + str(hparams.fold) + '*.ckpt'))
seg_model = load_pytorch_model(seg_ckpt_pth[0], seg_model)
if hparams.marge_type == 'cat':
in_channels = 7
elif hparams.marge_type == 'add':
in_channels = 3
cls_model = get_cls_model_from_name(model_name=hparams.cls_model_name,
in_channels=in_channels,
num_classes=1,
pretrained=True)
pl_model = PLImageSegmentationClassificationSystem(seg_model, cls_model,
hparams)
###
if hparams.auto_lr_find:
trainer = Trainer()
lr_finder = trainer.lr_find(pl_model)
print(lr_finder.results)
print(lr_finder.suggestion())
pl_model.learning_rate = lr_finder.suggestion()
###
trainer = Trainer(gpus=hparams.gpus,
max_epochs=hparams.max_epochs,
min_epochs=hparams.min_epochs,
max_steps=None,
min_steps=None,
checkpoint_callback=checkpoint_callback,
early_stop_callback=early_stop_callback,
logger=logger_list,
accumulate_grad_batches=1,
precision=hparams.precision,
amp_level='O1',
auto_lr_find=False,
benchmark=True,
check_val_every_n_epoch=hparams.check_val_every_n_epoch,
distributed_backend=hparams.distributed_backend,
num_nodes=1,
fast_dev_run=False,
gradient_clip_val=0.0,
log_gpu_memory=None,
log_save_interval=100,
num_sanity_val_steps=5,
overfit_pct=0.0)
# fit model !
trainer.fit(pl_model)
num_workers = 4
DATA_DIR = "C:\\Users\\ahrn1e19\\multiclass\\image_multiclass"
root_path = 'H:\\MSc-project'
checkpoint_callback = ModelCheckpoint(
filepath=root_path,
save_top_k=1,
verbose=True,
monitor='val_loss',
mode='min'
)
early_stop_callback = EarlyStopping(
monitor='val_loss',
min_delta=0.00,
patience=10,
verbose=False,
mode='auto'
)
model = torch.hub.load('pytorch/vision:v0.6.0', 'inception_v3', num_classes=5, aux_logits=False, transform_input=False, pretrained=False)
model.train()
# model
pl_model = InceptionV3(model)
# most basic trainer, uses good defaults
trainer = Trainer(default_root_dir=root_path, gpus=1, max_epochs=35,
checkpoint_callback=checkpoint_callback, early_stop_callback=early_stop_callback)
def test_min_steps_override_early_stopping_functionality(tmpdir, step_freeze: int, min_steps: int, min_epochs: int):
"""Excepted Behaviour:
IF `min_steps` was set to a higher value than the `trainer.global_step` when `early_stopping` is being triggered,
THEN the trainer should continue until reaching `trainer.global_step` == `min_steps`, and stop.
IF `min_epochs` resulted in a higher number of steps than the `trainer.global_step`
when `early_stopping` is being triggered,
THEN the trainer should continue until reaching
`trainer.global_step` == `min_epochs * len(train_dataloader)`, and stop.
This test validate this expected behaviour
IF both `min_epochs` and `min_steps` are provided and higher than the `trainer.global_step`
when `early_stopping` is being triggered,
THEN the highest between `min_epochs * len(train_dataloader)` and `min_steps` would be reached.
Caveat: IF min_steps is divisible by len(train_dataloader), then it will do min_steps + len(train_dataloader)
This test validate those expected behaviours
"""
_logger.disabled = True
original_loss_value = 10
limit_train_batches = 3
patience = 3
class Model(BoringModel):
def __init__(self, step_freeze):
super(Model, self).__init__()
self._step_freeze = step_freeze
self._loss_value = 10.0
self._eps = 1e-1
self._count_decrease = 0
self._values = []
def training_step(self, batch, batch_idx):
output = self.layer(batch)
loss = self.loss(batch, output)
return {"loss": loss}
def validation_step(self, batch, batch_idx):
return {"test_val_loss": self._loss_value}
def validation_epoch_end(self, outputs):
_mean = np.mean([x['test_val_loss'] for x in outputs])
if self.trainer.global_step <= self._step_freeze:
self._count_decrease += 1
self._loss_value -= self._eps
self._values.append(_mean)
self.log('test_val_loss', _mean)
model = Model(step_freeze)
model.training_step_end = None
model.test_dataloader = None
early_stop_callback = EarlyStopping(monitor="test_val_loss", patience=patience, verbose=True)
trainer = Trainer(
default_root_dir=tmpdir,
callbacks=[early_stop_callback],
limit_train_batches=limit_train_batches,
limit_val_batches=2,
min_steps=min_steps,
min_epochs=min_epochs,
)
trainer.fit(model)
# Make sure loss was properly decreased
assert abs(original_loss_value - (model._count_decrease) * model._eps - model._loss_value) < 1e-6
pos_diff = (np.diff(model._values) == 0).nonzero()[0][0]
# Compute when the latest validation epoch end happened
latest_validation_epoch_end = (pos_diff // limit_train_batches) * limit_train_batches
if pos_diff % limit_train_batches == 0:
latest_validation_epoch_end += limit_train_batches
# Compute early stopping latest step
by_early_stopping = latest_validation_epoch_end + (1 + limit_train_batches) * patience
# Compute min_epochs latest step
by_min_epochs = min_epochs * limit_train_batches
# Make sure the trainer stops for the max of all minimum requirements
assert trainer.global_step == max(min_steps, by_early_stopping, by_min_epochs), (
trainer.global_step,
max(min_steps, by_early_stopping, by_min_epochs),
step_freeze,
min_steps,
min_epochs,
)
_logger.disabled = False
download=True,
transform=transforms.ToTensor())
test_loader = DataLoader(test_dataset)
logger.info(f"Done!"
f"\n# of train examples: {n_train}"
f"\n# of val examples: {n_val}"
f"\n# of test examples: {len(test_dataset)}")
# init model
model = LitModel(args)
if args.patience is not None:
early_stop_ckpt = EarlyStopping(monitor='val_loss',
verbose=True,
patience=args.patience)
else:
early_stop_ckpt = None
profiler = SimpleProfiler()
lightning_log_pth = '/lightning_logs'
if not os.path.isdir(lightning_log_pth):
logger.warning(f"Unable to find {lightning_log_pth} to log to! "
f"If not running Grid then ignore.")
save_dir = ''
else:
save_dir = lightning_log_pth
if (not os.path.exists(args.ckpt_path)):
print('Creating CKPT Dir')
os.mkdir(args.ckpt_path)
'''
checkpoint_callback = ModelCheckpoint(
filepath=args.ckpt_path,
save_top_k=True,
verbose=True,
monitor='val_loss',
mode='min',
prefix=''
)
'''
early_stop_callback = EarlyStopping(monitor='val_loss',
min_delta=0.00005,
patience=3,
verbose=False,
mode='min')
for trial in range(args.num_runs):
args.__dict__["rand"] = trial + 1
trainer = pl.Trainer(default_save_path=args.ckpt_path,
distributed_backend=args.distributed_backend,
gpus=len(args.gpus.split(',')),
max_epochs=args.e,
early_stop_callback=early_stop_callback)
model = LMFineTuner(args)
trainer.fit(model)
trainer.test(model)
default=True)
parser.add_argument("-optim", default='adam', type=str)
parser.add_argument("-lr", default=1e-5, type=float)
parser.add_argument("-lr_bert", default=5e-4, type=float)
parser.add_argument("-beta1", default=0.9, type=float)
parser.add_argument("-beta2", default=0.999, type=float)
parser.add_argument("-warmup_steps", default=8000, type=int)
parser.add_argument("-warmup_steps_bert", default=8000, type=int)
parser.add_argument("-max_grad_norm", default=0, type=float)
args = parser.parse_args()
print("\nArguments...\n")
print(args)
print("\nCreating callbacks...\n")
early_stop_callback = EarlyStopping('val_p1', patience=5)
modelfilepath = '../trainedmodels/' + args.model_type + "_" + args.save_mname + '-{epoch:02d}-{val_loss:.2f}'
checkpoint_callback = ModelCheckpoint(filepath=modelfilepath,
save_top_k=10,
monitor='val_p5')
logger = TensorBoardLogger("../tb_logs",
name=args.model_type,
version=args.save_mname)
print("\nLoading Model...\n")
model = LitNet(Eval(), args, mode=args.model_type)
trainer = Trainer(gpus=[int(item) for item in args.gpus.split(',')],
min_epochs=1,
max_epochs=args.epochs,
distributed_backend='dp',
profiler=True,
def main(argv):
if not os.path.exists(FLAGS.logs_dir):
os.makedirs(FLAGS.logs_dir)
set_seed(FLAGS.seed)
id2class, intent_examples = read_nlu_data()
if FLAGS.do_train:
if not os.path.exists(FLAGS.output_dir):
os.makedirs(FLAGS.output_dir)
model = NluClassifier(id2class, intent_examples)
early_stop_callback = EarlyStopping(
monitor=FLAGS.monitor,
min_delta=0.0,
patience=FLAGS.patience,
verbose=True,
mode=FLAGS.metric_mode,
)
checkpoint_callback = ModelCheckpoint(filepath=FLAGS.output_dir,
save_top_k=3,
monitor=FLAGS.monitor,
mode=FLAGS.metric_mode,
prefix='nlu_')
trainer = pl.Trainer(
default_root_dir='logs',
gpus=(FLAGS.gpus if torch.cuda.is_available() else 0),
distributed_backend='dp',
max_epochs=FLAGS.epochs,
fast_dev_run=FLAGS.debug,
logger=pl.loggers.TensorBoardLogger('logs/', name='nlu',
version=0),
checkpoint_callback=checkpoint_callback,
early_stop_callback=early_stop_callback)
trainer.fit(model)
if FLAGS.do_predict:
from sanic import Sanic, response
server = Sanic()
checkpoints = list(
sorted(
glob(os.path.join(FLAGS.output_dir, "nlu_*.ckpt"),
recursive=True)))
model = NluClassifier.load_from_checkpoint(
checkpoint_path=checkpoints[-1],
id2class=id2class,
intent_examples=intent_examples)
model.eval()
model.freeze()
@server.route("/parse", methods=['POST'])
async def parse(request):
texts = request.json
prediction = model.predict(texts)
return response.json(prediction)
server.run(host="0.0.0.0", port=5000, debug=True)
def train(exp_name, gpus):
print("Start")
file = open('data/nela-covid-2020/combined/headlines_cnn_bart_split.pkl',
'rb')
# file = open('data/nela-covid-2020/combined/headlines_contentmorals_cnn_bart_split.pkl', 'rb')
data = pickle.load(file)
file.close()
print("Data Loaded")
# create datasets
# train_dataset = NewsDataset(data['train'][0:1])
train_dataset = NewsDataset(data['train'])
val_dataset = NewsDataset(data['val'])
test_dataset = NewsDataset(data['test'])
embedding_dataset = EmbeddingDataset()
train_loader = DataLoader(train_dataset, batch_size=32, num_workers=4)
val_loader = DataLoader(val_dataset, batch_size=32, num_workers=4)
# train_loader = DataLoader(train_dataset, batch_size=16, num_workers=4)
# val_loader = DataLoader(val_dataset, batch_size=16, num_workers=4)
# train_loader = DataLoader(embedding_dataset, batch_size=32, num_workers=4)
# train_loader = DataLoader(embedding_dataset, batch_size=512, num_workers=4)
# val_loader = DataLoader(embedding_dataset, batch_size=64, num_workers=4)
# ------------
# training
# ------------
LEARNING_RATE = 1e-5
hparams = {'lr': LEARNING_RATE}
model = OneHotMoralClassifier(hparams, use_mask=False)
# model = CustomMoralClassifier(hparams)
# model = MoralClassifier(hparams)
# model = PseudoEmbedding(hparams)
early_stop_callback = EarlyStopping(monitor='val_loss',
min_delta=0.00,
patience=3,
verbose=True,
mode='auto')
checkpoint_callback = ModelCheckpoint(dirpath=os.path.join(
"./experiments", exp_name, "checkpoints"),
save_top_k=1,
monitor='train_loss',
mode='min')
trainer = Trainer(
gpus=gpus,
# auto_lr_find=False, # use to explore LRs
# distributed_backend='dp',
max_epochs=20,
callbacks=[early_stop_callback, checkpoint_callback],
)
# LR Exploration
# lr_finder = trainer.tuner.lr_find(model, train_loader, val_loader)
# print(lr_finder.results)
# fig = lr_finder.plot(suggest=True)
# # fig.show()
# # fig.savefig('lr.png')
# new_lr = lr_finder.suggestion()
# print(new_lr)
trainer.fit(model, train_loader, val_loader)
print("Training Done")
val_dataset = create_dataset(val['X'],
val['y'],
model_name,
256,
num_classes=2)
train_dataloader = DataLoader(train_dataset,
batch_size=64,
num_workers=3,
shuffle=True)
val_dataloader = DataLoader(val_dataset,
batch_size=64,
num_workers=3,
shuffle=False)
early_stopping = EarlyStopping('val_accuracy', patience=6, mode='max')
model_checkpoint = ModelCheckpoint(monitor='val_accuracy',
mode='max',
save_top_k=1)
trainer = pl.Trainer(
deterministic=True,
weights_save_path=f'checkpoints/{checkpoint_directory}/',
logger=wandb_logger,
early_stop_callback=early_stopping,
checkpoint_callback=model_checkpoint,
distributed_backend='dp',
gpus=None,
# gradient_clip_val=0.5,
num_sanity_val_steps=-1,
min_epochs=100)
def get_early_stop_callback(patience=10):
return EarlyStopping(monitor='val_loss',
patience=patience,
verbose=True,
mode='min')
def get_early_stopping_callback(metric, patience):
return EarlyStopping(monitor=f"val_{metric}", mode="max", patience=patience, verbose=True,)
else:
suggested_lr = float(lr_find_config.loc[args.model_name, 'lr'])
print(f'Reading LR {suggested_lr} from archive config.')
model.lr = suggested_lr
# Need to manually update, similar to doc.
# Reference: https://pytorch-lightning.readthedocs.io/en/latest/lr_finder.html
model.hparams.lr = suggested_lr
if args.logger_platform == 'wandb':
logger = WandbLogger(project="ptb-xl")
elif args.logger_platform == 'tensorboard':
logger = TensorBoardLogger(args.log_dir, name='')
model.log_dir = args.log_dir
early_stopping_callback = EarlyStopping(
verbose=True, monitor='val_epoch_loss', mode='min',
patience=5) if args.early_stopping else None
checkpoint_callback = args.checkpoint_models and int(
os.environ.get('LOCAL_RANK', 0)) == 0
progress_bar_callback = ProgressBar()
batch_gradient_verification_callback = BatchGradientVerificationCallback(
output_mapping=lambda output: output['loss'])
batch_norm_verification_callback = BatchNormVerificationCallback()
module_monitor_callback = ModuleDataMonitor(submodules=True)
# Resetting trainer due to some issue with threading otherwise
trainer = Trainer.from_argparse_args(
args,
checkpoint_callback=checkpoint_callback,
deterministic=True,
logger=logger,