def __setXmippImage(label):
attr = '_xmipp_' + xmipp.label2Str(label)
if not hasattr(particle, attr):
img = Image()
setattr(particle, attr, img)
img.setSamplingRate(particle.getSamplingRate())
else:
img = getattr(particle, attr)
img.setLocation(xmippToLocation(row.getValue(label)))
def __setXmippImage(label):
attr = '_xmipp_' + xmipp.label2Str(label)
if not hasattr(particle, attr):
img = Image()
setattr(particle, attr, img)
img.setSamplingRate(particle.getSamplingRate())
else:
img = getattr(particle, attr)
img.setLocation(xmippToLocation(row.getValue(label)))
def createOutputStep(self):
# Really load the input, since in the streaming case we can not
# use the self.inputMovies directly
allFramesSum = self._getPath('all_frames_sum.mrc')
allFramesAvg = self._getPath('all_frames_avg.mrc')
self._loadInputList()
n = len(self.listOfMovies)
ih = ImageHandler()
sumImg = ih.read(allFramesSum)
sumImg.inplaceDivide(float(n))
sumImg.write(allFramesAvg)
outputAvg = Image()
outputAvg.setFileName(allFramesAvg)
outputAvg.setSamplingRate(self.listOfMovies[0].getSamplingRate())
self._defineOutputs(outputAverage=outputAvg)
self._defineSourceRelation(self.inputMovies, outputAvg)
