def _initialize(self):
""" This function is mean to be called after the
working dir for the protocol have been set. (maybe after recovery from mapper)
"""
ProtRelionBase._initialize(self)
self.ClassFnTemplate = "%(ref)03d@%(rootDir)s/relion_it%(iter)03d_classes.mrcs"
self.numberOfClasses.set(1) # For refinement we only need just one "class"
def _initialize(self):
""" This function is mean to be called after the
working dir for the protocol have been set.
(maybe after recovery from mapper)
"""
ProtRelionBase._initialize(self)
self.ClassFnTemplate = '%(ref)03d@%(rootDir)s/relion_it%(iter)03d_classes.mrcs'
def _initialize(self):
""" This function is mean to be called after the
working dir for the protocol have been set.
(maybe after recovery from mapper)
"""
ProtRelionBase._initialize(self)
def __init__(self, **args):
ProtRelionBase.__init__(self, **args)
def _initialize(self):
""" This function is mean to be called after the
working dir for the protocol have been set. (maybe after recovery from mapper)
"""
ProtRelionBase._initialize(self)
def __init__(self, **args):
ProtRelionBase.__init__(self, **args)
def _summary(self):
if not hasattr(self, "outputVolume"):
return ["Output volume not ready yet."]
else:
return ProtRelionBase._summary(self)
def _initialize(self):
""" This function is mean to be called after the
working dir for the protocol have been set. (maybe after recovery from mapper)
"""
ProtRelionBase._initialize(self)
self.ClassFnTemplate = '%(ref)03d@%(rootDir)s/relion_it%(iter)03d_classes.mrcs'
def _summary(self):
if not hasattr(self, 'outputVolume'):
return ["Output volume not ready yet."]
else:
return ProtRelionBase._summary(self)
