Esempi in Python per _parse_biom_table_v210

Esempio n. 1

File: test_transformer.py Progetto: qiime2/q2-types

    def test_biom_v210_format_to_pandas_data_frame(self):
        input, obs = self.transform_format(BIOMV210Format, pd.DataFrame,
                                           filename='feature-table_v210.biom')

        table = _parse_biom_table_v210(input)
        df = _table_to_dataframe(table)

        assert_frame_equal(df, obs)

Esempio n. 2

File: test_transformer.py Progetto: qiime2/q2-types

    def test_biom_v210_format_to_metadata(self):
        input, obs = self.transform_format(BIOMV210Format, qiime2.Metadata,
                                           filename='feature-table_v210.biom')

        table = _parse_biom_table_v210(input)
        df = _table_to_metadata(table)

        self.assertEqual(df, obs)

Esempio n. 3

    def test_biom_v210_format_to_pandas_data_frame(self):
        input, obs = self.transform_format(BIOMV210Format,
                                           pd.DataFrame,
                                           filename='feature-table_v210.biom')

        table = _parse_biom_table_v210(input)
        df = _table_to_dataframe(table)

        assert_frame_equal(df, obs)

Esempio n. 4

    def test_biom_v210_format_to_metadata(self):
        input, obs = self.transform_format(BIOMV210Format,
                                           qiime2.Metadata,
                                           filename='feature-table_v210.biom')

        table = _parse_biom_table_v210(input)
        df = _table_to_metadata(table)

        self.assertEqual(df, obs)