def build_color_preferences(mapping_file_tuple):
"""defines and calculates color prefrences for alpha_rarefaction plots
Inputs:
mapping_file_tuple: parsed mapping file information i. e. (data, headers)
Outputs:
A list containing color_prefs, data, background_color, label_color for usage
with make_averages or any other qiime visualization module
"""
data = {}
# format the mapping file for use with process_by_color
mapping_file_data, mapping_file_headers = mapping_file_tuple
formatted_mapping_file = [mapping_file_headers]
formatted_mapping_file.extend(mapping_file_data)
data['map'] = formatted_mapping_file
background_color = 'black'
label_color = 'white'
# the colors will only be based on the data
color_prefs, data = process_colorby(None, data, None)
return color_prefs, data, background_color, label_color
def build_color_preferences(mapping_file_tuple):
"""defines and calculates color prefrences for alpha_rarefaction plots
Inputs:
mapping_file_tuple: parsed mapping file information i. e. (data, headers)
Outputs:
A list containing color_prefs, data, background_color, label_color for usage
with make_averages or any other qiime visualization module
"""
data = {}
# format the mapping file for use with process_by_color
mapping_file_data, mapping_file_headers = mapping_file_tuple
formatted_mapping_file =[mapping_file_headers]
formatted_mapping_file.extend(mapping_file_data)
data['map']= formatted_mapping_file
background_color='black'
label_color='white'
# the colors will only be based on the data
color_prefs, data = process_colorby(None, data, None)
return color_prefs, data, background_color, label_color
def test_process_colorby(self):
"""process_colorby: parses the cmd line and determines which columns \
from mapping file to color by"""
self.colorby = 'Day'
exp1 = {}
exp1['Day'] = {'column': 'Day'}
obs1, obs2 = process_colorby(self.colorby, self.data)
self.assertEqual(obs1, exp1)
self.assertEqual(obs2, self.data)
def test_process_colorby(self):
"""process_colorby: parses the cmd line and determines which columns \
from mapping file to color by"""
self.colorby = 'Day'
exp1 = {}
exp1['Day'] = {'column': 'Day'}
obs1, obs2 = process_colorby(self.colorby, self.data)
self.assertEqual(obs1, exp1)
self.assertEqual(obs2, self.data)
def test_process_colorby(self):
"""process_colorby: parses the cmd line and determines which columns \
from mapping file to color by"""
self.colorby = "Day"
exp1 = {}
exp1["Day"] = {"column": "Day"}
obs1, obs2 = process_colorby(self.colorby, self.data)
self.assertEqual(obs1, exp1)
self.assertEqual(obs2, self.data)
