def setUp(self):
""" """
# instantiating the abstract class to test some of the more
# stand-alone methods
self.pw = ParallelWrapper()
class ParallelWrapperTests(TestCase):
def setUp(self):
""" """
# instantiating the abstract class to test some of the more
# stand-alone methods
self.pw = ParallelWrapper()
def test_merge_to_n_commands_even(self):
""" _merge_to_n_commands functions as expected (even number of cmds)"""
commands = [
'pick_otus.py -h ; mv somthing.txt something_else.txt',
'pick_otus.py -g', 'pick_otus.py -f', 'pick_otus.py -w'
]
expected = [
'/bin/bash ; pick_otus.py -h ; mv somthing.txt something_else.txt ; pick_otus.py -g ; pick_otus.py -f ; pick_otus.py -w ; exit'
]
actual = self.pw._merge_to_n_commands(commands, 1)
self.assertEqual(actual, expected)
expected = [
'/bin/bash ; pick_otus.py -h ; mv somthing.txt something_else.txt ; pick_otus.py -g ; exit',
'/bin/bash ; pick_otus.py -f ; pick_otus.py -w ; exit'
]
actual = self.pw._merge_to_n_commands(commands, 2)
self.assertEqual(actual, expected)
# rounds to 2 jobs to start
expected = [
'/bin/bash ; pick_otus.py -h ; mv somthing.txt something_else.txt ; pick_otus.py -g ; exit',
'/bin/bash ; pick_otus.py -f ; pick_otus.py -w ; exit'
]
actual = self.pw._merge_to_n_commands(commands, 3)
self.assertEqual(actual, expected)
expected = [
'/bin/bash ; pick_otus.py -h ; mv somthing.txt something_else.txt ; exit',
'/bin/bash ; pick_otus.py -g ; exit',
'/bin/bash ; pick_otus.py -f ; exit',
'/bin/bash ; pick_otus.py -w ; exit'
]
actual = self.pw._merge_to_n_commands(commands, 4)
self.assertEqual(actual, expected)
self.assertRaises(ValueError, self.pw._merge_to_n_commands, commands,
0)
self.assertRaises(ValueError, self.pw._merge_to_n_commands, commands,
-42)
# jobs to start is much higer than actual jobs
expected = [
'/bin/bash ; pick_otus.py -h ; mv somthing.txt something_else.txt ; exit',
'/bin/bash ; pick_otus.py -g ; exit',
'/bin/bash ; pick_otus.py -f ; exit',
'/bin/bash ; pick_otus.py -w ; exit'
]
actual = self.pw._merge_to_n_commands(commands, 100)
self.assertEqual(actual, expected)
self.assertRaises(ValueError, self.pw._merge_to_n_commands, commands,
0)
self.assertRaises(ValueError, self.pw._merge_to_n_commands, commands,
-42)
def test_merge_to_n_commands_odd(self):
""" _merge_to_n_commands functions as expected (odd number of cmds)"""
commands = ['pick_otus.py -h', 'pick_otus.py -g', 'pick_otus.py -w']
expected = [
'/bin/bash ; pick_otus.py -h ; pick_otus.py -g ; pick_otus.py -w ; exit'
]
actual = self.pw._merge_to_n_commands(commands, 1)
self.assertEqual(actual, expected)
# rounds to 1 job to start
expected = [
'/bin/bash ; pick_otus.py -h ; pick_otus.py -g ; pick_otus.py -w ; exit'
]
actual = self.pw._merge_to_n_commands(commands, 2)
self.assertEqual(actual, expected)
expected = [
'/bin/bash ; pick_otus.py -h ; exit',
'/bin/bash ; pick_otus.py -g ; exit',
'/bin/bash ; pick_otus.py -w ; exit'
]
actual = self.pw._merge_to_n_commands(commands, 3)
self.assertEqual(actual, expected)
expected = [
'/bin/bash ; pick_otus.py -h ; exit',
'/bin/bash ; pick_otus.py -g ; exit',
'/bin/bash ; pick_otus.py -w ; exit'
]
actual = self.pw._merge_to_n_commands(commands, 4)
self.assertEqual(actual, expected)
expected = [
'/bin/bash ; pick_otus.py -h ; exit',
'/bin/bash ; pick_otus.py -g ; exit',
'/bin/bash ; pick_otus.py -w ; exit'
]
actual = self.pw._merge_to_n_commands(commands, 100)
self.assertEqual(actual, expected)
self.assertRaises(ValueError, self.pw._merge_to_n_commands, commands,
0)
self.assertRaises(ValueError, self.pw._merge_to_n_commands, commands,
-42)
def test_merge_to_n_commands_alt_params(self):
""" _merge_to_n_commands functions with alt params"""
commands = ['pick_otus.py -h', 'pick_otus.py -g', 'pick_otus.py -w']
expected = ['pick_otus.py -h ; pick_otus.py -g ; pick_otus.py -w']
actual = self.pw._merge_to_n_commands(commands,
2,
command_prefix='',
command_suffix='')
self.assertEqual(actual, expected)
expected = ['pick_otus.py -h ! pick_otus.py -g ! pick_otus.py -w']
actual = self.pw._merge_to_n_commands(commands,
2,
command_prefix='',
command_suffix='',
delimiter=' ! ')
self.assertEqual(actual, expected)
commands = map(str, range(10))
actual = self.pw._merge_to_n_commands(commands,
5,
command_prefix='',
command_suffix='',
delimiter=',')
expected = ['0,1', '2,3', '4,5', '6,7', '8,9']
self.assertEqual(actual, expected)
def test_merge_to_n_commands_w_prefix(self):
""" _merge_to_n_commands functions as expected (w prefix/suffix)"""
commands = [
'/bin/bash ; pick_otus.py -h ; exit',
'/bin/bash;pick_otus.py -g;exit',
'/bin/bash ; pick_otus.py -h ; exit ; /bin/bash ; pick_otus.py -w ; exit'
]
expected = [
'/bin/bash ; pick_otus.py -h ; pick_otus.py -g ; pick_otus.py -h ; pick_otus.py -w ; exit'
]
actual = self.pw._merge_to_n_commands(commands,
2,
command_prefix='/bin/bash ;',
command_suffix='; exit')
self.assertEqual(actual, expected)
actual = self.pw._merge_to_n_commands(commands, 2)
self.assertEqual(actual, expected)
def test_get_random_job_prefix(self):
""" get_random_job_prefix functions as expected """
s1 = self.pw._get_random_job_prefix()
s2 = self.pw._get_random_job_prefix()
self.assertNotEqual(s1, s2)
self.assertEqual(len(s1), 10)
self.assertEqual(len(s2), 10)
# different max len
s1 = self.pw._get_random_job_prefix(max_job_prefix_len=22)
self.assertEqual(len(s1), 22)
# fixed_prefix added
s1 = self.pw._get_random_job_prefix(fixed_prefix='TEST')
s2 = self.pw._get_random_job_prefix(fixed_prefix='TEST')
self.assertNotEqual(s1, s2)
self.assertEqual(len(s1), 10)
self.assertTrue(s1.startswith('TEST'))
self.assertTrue(s2.startswith('TEST'))
# leading/trailing underscores added
self.assertTrue(s1.startswith('TEST_'))
self.assertTrue(s1.endswith('_'))
# no leading/trailing underscores
s1 = self.pw._get_random_job_prefix(leading_trailing_underscores=False)
self.assertFalse(s1.startswith('_'))
self.assertFalse(s1.endswith('_'))
# combo of all parameters
s1 = self.pw._get_random_job_prefix(leading_trailing_underscores=False,
fixed_prefix='HELLO',
max_job_prefix_len=12)
self.assertEqual(len(s1), 12)
self.assertTrue(s1.startswith('HELLO'))
self.assertFalse(s1.endswith('_'))
def test_compute_seqs_per_file(self):
"""compute_seqs_per_file functions as expected
"""
fd, temp_fasta_fp = mkstemp(prefix='QiimeScriptUtilTests',
suffix='.fasta')
close(fd)
temp_fasta = ['>seq', 'AAACCCCAAATTGG'] * 25
open(temp_fasta_fp, 'w').write('\n'.join(temp_fasta))
actual_25 = self.pw._compute_seqs_per_file(temp_fasta_fp, 25)
actual_2 = self.pw._compute_seqs_per_file(temp_fasta_fp, 2)
actual_10 = self.pw._compute_seqs_per_file(temp_fasta_fp, 10)
actual_5 = self.pw._compute_seqs_per_file(temp_fasta_fp, 5)
actual_40 = self.pw._compute_seqs_per_file(temp_fasta_fp, 40)
remove_files([temp_fasta_fp])
self.assertEqual(actual_25, 1)
self.assertEqual(actual_2, 13)
self.assertEqual(actual_10, 3)
self.assertEqual(actual_5, 5)
self.assertEqual(actual_40, 1)
class ParallelWrapperTests(TestCase):
def setUp(self):
""" """
# instantiating the abstract class to test some of the more
# stand-alone methods
self.pw = ParallelWrapper()
def test_merge_to_n_commands_even(self):
""" _merge_to_n_commands functions as expected (even number of cmds)"""
commands = ['pick_otus.py -h ; mv somthing.txt something_else.txt',
'pick_otus.py -g',
'pick_otus.py -f',
'pick_otus.py -w']
expected = [
'/bin/bash ; pick_otus.py -h ; mv somthing.txt something_else.txt ; pick_otus.py -g ; pick_otus.py -f ; pick_otus.py -w ; exit']
actual = self.pw._merge_to_n_commands(commands, 1)
self.assertEqual(actual, expected)
expected = [
'/bin/bash ; pick_otus.py -h ; mv somthing.txt something_else.txt ; pick_otus.py -g ; exit',
'/bin/bash ; pick_otus.py -f ; pick_otus.py -w ; exit']
actual = self.pw._merge_to_n_commands(commands, 2)
self.assertEqual(actual, expected)
# rounds to 2 jobs to start
expected = [
'/bin/bash ; pick_otus.py -h ; mv somthing.txt something_else.txt ; pick_otus.py -g ; exit',
'/bin/bash ; pick_otus.py -f ; pick_otus.py -w ; exit']
actual = self.pw._merge_to_n_commands(commands, 3)
self.assertEqual(actual, expected)
expected = [
'/bin/bash ; pick_otus.py -h ; mv somthing.txt something_else.txt ; exit',
'/bin/bash ; pick_otus.py -g ; exit',
'/bin/bash ; pick_otus.py -f ; exit',
'/bin/bash ; pick_otus.py -w ; exit']
actual = self.pw._merge_to_n_commands(commands, 4)
self.assertEqual(actual, expected)
self.assertRaises(
ValueError,
self.pw._merge_to_n_commands,
commands,
0)
self.assertRaises(
ValueError,
self.pw._merge_to_n_commands,
commands,
-42)
# jobs to start is much higer than actual jobs
expected = [
'/bin/bash ; pick_otus.py -h ; mv somthing.txt something_else.txt ; exit',
'/bin/bash ; pick_otus.py -g ; exit',
'/bin/bash ; pick_otus.py -f ; exit',
'/bin/bash ; pick_otus.py -w ; exit']
actual = self.pw._merge_to_n_commands(commands, 100)
self.assertEqual(actual, expected)
self.assertRaises(
ValueError,
self.pw._merge_to_n_commands,
commands,
0)
self.assertRaises(
ValueError,
self.pw._merge_to_n_commands,
commands,
-42)
def test_merge_to_n_commands_odd(self):
""" _merge_to_n_commands functions as expected (odd number of cmds)"""
commands = ['pick_otus.py -h',
'pick_otus.py -g',
'pick_otus.py -w']
expected = [
'/bin/bash ; pick_otus.py -h ; pick_otus.py -g ; pick_otus.py -w ; exit']
actual = self.pw._merge_to_n_commands(commands, 1)
self.assertEqual(actual, expected)
# rounds to 1 job to start
expected = [
'/bin/bash ; pick_otus.py -h ; pick_otus.py -g ; pick_otus.py -w ; exit']
actual = self.pw._merge_to_n_commands(commands, 2)
self.assertEqual(actual, expected)
expected = ['/bin/bash ; pick_otus.py -h ; exit',
'/bin/bash ; pick_otus.py -g ; exit',
'/bin/bash ; pick_otus.py -w ; exit']
actual = self.pw._merge_to_n_commands(commands, 3)
self.assertEqual(actual, expected)
expected = ['/bin/bash ; pick_otus.py -h ; exit',
'/bin/bash ; pick_otus.py -g ; exit',
'/bin/bash ; pick_otus.py -w ; exit']
actual = self.pw._merge_to_n_commands(commands, 4)
self.assertEqual(actual, expected)
expected = ['/bin/bash ; pick_otus.py -h ; exit',
'/bin/bash ; pick_otus.py -g ; exit',
'/bin/bash ; pick_otus.py -w ; exit']
actual = self.pw._merge_to_n_commands(commands, 100)
self.assertEqual(actual, expected)
self.assertRaises(
ValueError,
self.pw._merge_to_n_commands,
commands,
0)
self.assertRaises(
ValueError,
self.pw._merge_to_n_commands,
commands,
-42)
def test_merge_to_n_commands_alt_params(self):
""" _merge_to_n_commands functions with alt params"""
commands = ['pick_otus.py -h',
'pick_otus.py -g',
'pick_otus.py -w']
expected = ['pick_otus.py -h ; pick_otus.py -g ; pick_otus.py -w']
actual = self.pw._merge_to_n_commands(
commands,
2,
command_prefix='',
command_suffix='')
self.assertEqual(actual, expected)
expected = ['pick_otus.py -h ! pick_otus.py -g ! pick_otus.py -w']
actual = self.pw._merge_to_n_commands(commands, 2, command_prefix='',
command_suffix='', delimiter=' ! ')
self.assertEqual(actual, expected)
commands = map(str, range(10))
actual = self.pw._merge_to_n_commands(commands, 5, command_prefix='',
command_suffix='', delimiter=',')
expected = ['0,1', '2,3', '4,5', '6,7', '8,9']
self.assertEqual(actual, expected)
def test_merge_to_n_commands_w_prefix(self):
""" _merge_to_n_commands functions as expected (w prefix/suffix)"""
commands = ['/bin/bash ; pick_otus.py -h ; exit',
'/bin/bash;pick_otus.py -g;exit',
'/bin/bash ; pick_otus.py -h ; exit ; /bin/bash ; pick_otus.py -w ; exit']
expected = [
'/bin/bash ; pick_otus.py -h ; pick_otus.py -g ; pick_otus.py -h ; pick_otus.py -w ; exit']
actual = self.pw._merge_to_n_commands(
commands,
2,
command_prefix='/bin/bash ;',
command_suffix='; exit')
self.assertEqual(actual, expected)
actual = self.pw._merge_to_n_commands(commands, 2)
self.assertEqual(actual, expected)
def test_get_random_job_prefix(self):
""" get_random_job_prefix functions as expected """
s1 = self.pw._get_random_job_prefix()
s2 = self.pw._get_random_job_prefix()
self.assertNotEqual(s1, s2)
self.assertEqual(len(s1), 10)
self.assertEqual(len(s2), 10)
# different max len
s1 = self.pw._get_random_job_prefix(max_job_prefix_len=22)
self.assertEqual(len(s1), 22)
# fixed_prefix added
s1 = self.pw._get_random_job_prefix(fixed_prefix='TEST')
s2 = self.pw._get_random_job_prefix(fixed_prefix='TEST')
self.assertNotEqual(s1, s2)
self.assertEqual(len(s1), 10)
self.assertTrue(s1.startswith('TEST'))
self.assertTrue(s2.startswith('TEST'))
# leading/trailing underscores added
self.assertTrue(s1.startswith('TEST_'))
self.assertTrue(s1.endswith('_'))
# no leading/trailing underscores
s1 = self.pw._get_random_job_prefix(leading_trailing_underscores=False)
self.assertFalse(s1.startswith('_'))
self.assertFalse(s1.endswith('_'))
# combo of all parameters
s1 = self.pw._get_random_job_prefix(leading_trailing_underscores=False,
fixed_prefix='HELLO', max_job_prefix_len=12)
self.assertEqual(len(s1), 12)
self.assertTrue(s1.startswith('HELLO'))
self.assertFalse(s1.endswith('_'))
def test_compute_seqs_per_file(self):
"""compute_seqs_per_file functions as expected
"""
fd, temp_fasta_fp = mkstemp(prefix='QiimeScriptUtilTests',
suffix='.fasta')
close(fd)
temp_fasta = ['>seq', 'AAACCCCAAATTGG'] * 25
open(temp_fasta_fp, 'w').write('\n'.join(temp_fasta))
actual_25 = self.pw._compute_seqs_per_file(temp_fasta_fp, 25)
actual_2 = self.pw._compute_seqs_per_file(temp_fasta_fp, 2)
actual_10 = self.pw._compute_seqs_per_file(temp_fasta_fp, 10)
actual_5 = self.pw._compute_seqs_per_file(temp_fasta_fp, 5)
actual_40 = self.pw._compute_seqs_per_file(temp_fasta_fp, 40)
remove_files([temp_fasta_fp])
self.assertEqual(actual_25, 1)
self.assertEqual(actual_2, 13)
self.assertEqual(actual_10, 3)
self.assertEqual(actual_5, 5)
self.assertEqual(actual_40, 1)
def setUp(self):
""" """
# instantiating the abstract class to test some of the more
# stand-alone methods
self.pw = ParallelWrapper()
class ParallelWrapperTests(TestCase):
def setUp(self):
""" """
# instantiating the abstract class to test some of the more
# stand-alone methods
self.pw = ParallelWrapper()
def test_merge_to_n_commands_even(self):
""" _merge_to_n_commands functions as expected (even number of cmds)"""
commands = [
"pick_otus.py -h ; mv somthing.txt something_else.txt",
"pick_otus.py -g",
"pick_otus.py -f",
"pick_otus.py -w",
]
expected = [
"/bin/bash ; pick_otus.py -h ; mv somthing.txt something_else.txt ; pick_otus.py -g ; pick_otus.py -f ; pick_otus.py -w ; exit"
]
actual = self.pw._merge_to_n_commands(commands, 1)
self.assertEqual(actual, expected)
expected = [
"/bin/bash ; pick_otus.py -h ; mv somthing.txt something_else.txt ; pick_otus.py -g ; exit",
"/bin/bash ; pick_otus.py -f ; pick_otus.py -w ; exit",
]
actual = self.pw._merge_to_n_commands(commands, 2)
self.assertEqual(actual, expected)
# rounds to 2 jobs to start
expected = [
"/bin/bash ; pick_otus.py -h ; mv somthing.txt something_else.txt ; pick_otus.py -g ; exit",
"/bin/bash ; pick_otus.py -f ; pick_otus.py -w ; exit",
]
actual = self.pw._merge_to_n_commands(commands, 3)
self.assertEqual(actual, expected)
expected = [
"/bin/bash ; pick_otus.py -h ; mv somthing.txt something_else.txt ; exit",
"/bin/bash ; pick_otus.py -g ; exit",
"/bin/bash ; pick_otus.py -f ; exit",
"/bin/bash ; pick_otus.py -w ; exit",
]
actual = self.pw._merge_to_n_commands(commands, 4)
self.assertEqual(actual, expected)
self.assertRaises(ValueError, self.pw._merge_to_n_commands, commands, 0)
self.assertRaises(ValueError, self.pw._merge_to_n_commands, commands, -42)
# jobs to start is much higer than actual jobs
expected = [
"/bin/bash ; pick_otus.py -h ; mv somthing.txt something_else.txt ; exit",
"/bin/bash ; pick_otus.py -g ; exit",
"/bin/bash ; pick_otus.py -f ; exit",
"/bin/bash ; pick_otus.py -w ; exit",
]
actual = self.pw._merge_to_n_commands(commands, 100)
self.assertEqual(actual, expected)
self.assertRaises(ValueError, self.pw._merge_to_n_commands, commands, 0)
self.assertRaises(ValueError, self.pw._merge_to_n_commands, commands, -42)
def test_merge_to_n_commands_odd(self):
""" _merge_to_n_commands functions as expected (odd number of cmds)"""
commands = ["pick_otus.py -h", "pick_otus.py -g", "pick_otus.py -w"]
expected = ["/bin/bash ; pick_otus.py -h ; pick_otus.py -g ; pick_otus.py -w ; exit"]
actual = self.pw._merge_to_n_commands(commands, 1)
self.assertEqual(actual, expected)
# rounds to 1 job to start
expected = ["/bin/bash ; pick_otus.py -h ; pick_otus.py -g ; pick_otus.py -w ; exit"]
actual = self.pw._merge_to_n_commands(commands, 2)
self.assertEqual(actual, expected)
expected = [
"/bin/bash ; pick_otus.py -h ; exit",
"/bin/bash ; pick_otus.py -g ; exit",
"/bin/bash ; pick_otus.py -w ; exit",
]
actual = self.pw._merge_to_n_commands(commands, 3)
self.assertEqual(actual, expected)
expected = [
"/bin/bash ; pick_otus.py -h ; exit",
"/bin/bash ; pick_otus.py -g ; exit",
"/bin/bash ; pick_otus.py -w ; exit",
]
actual = self.pw._merge_to_n_commands(commands, 4)
self.assertEqual(actual, expected)
expected = [
"/bin/bash ; pick_otus.py -h ; exit",
"/bin/bash ; pick_otus.py -g ; exit",
"/bin/bash ; pick_otus.py -w ; exit",
]
actual = self.pw._merge_to_n_commands(commands, 100)
self.assertEqual(actual, expected)
self.assertRaises(ValueError, self.pw._merge_to_n_commands, commands, 0)
self.assertRaises(ValueError, self.pw._merge_to_n_commands, commands, -42)
def test_merge_to_n_commands_alt_params(self):
""" _merge_to_n_commands functions with alt params"""
commands = ["pick_otus.py -h", "pick_otus.py -g", "pick_otus.py -w"]
expected = ["pick_otus.py -h ; pick_otus.py -g ; pick_otus.py -w"]
actual = self.pw._merge_to_n_commands(commands, 2, command_prefix="", command_suffix="")
self.assertEqual(actual, expected)
expected = ["pick_otus.py -h ! pick_otus.py -g ! pick_otus.py -w"]
actual = self.pw._merge_to_n_commands(commands, 2, command_prefix="", command_suffix="", delimiter=" ! ")
self.assertEqual(actual, expected)
commands = map(str, range(10))
actual = self.pw._merge_to_n_commands(commands, 5, command_prefix="", command_suffix="", delimiter=",")
expected = ["0,1", "2,3", "4,5", "6,7", "8,9"]
self.assertEqual(actual, expected)
def test_merge_to_n_commands_w_prefix(self):
""" _merge_to_n_commands functions as expected (w prefix/suffix)"""
commands = [
"/bin/bash ; pick_otus.py -h ; exit",
"/bin/bash;pick_otus.py -g;exit",
"/bin/bash ; pick_otus.py -h ; exit ; /bin/bash ; pick_otus.py -w ; exit",
]
expected = ["/bin/bash ; pick_otus.py -h ; pick_otus.py -g ; pick_otus.py -h ; pick_otus.py -w ; exit"]
actual = self.pw._merge_to_n_commands(commands, 2, command_prefix="/bin/bash ;", command_suffix="; exit")
self.assertEqual(actual, expected)
actual = self.pw._merge_to_n_commands(commands, 2)
self.assertEqual(actual, expected)
def test_get_random_job_prefix(self):
""" get_random_job_prefix functions as expected """
s1 = self.pw._get_random_job_prefix()
s2 = self.pw._get_random_job_prefix()
self.assertNotEqual(s1, s2)
self.assertEqual(len(s1), 10)
self.assertEqual(len(s2), 10)
# different max len
s1 = self.pw._get_random_job_prefix(max_job_prefix_len=22)
self.assertEqual(len(s1), 22)
# fixed_prefix added
s1 = self.pw._get_random_job_prefix(fixed_prefix="TEST")
s2 = self.pw._get_random_job_prefix(fixed_prefix="TEST")
self.assertNotEqual(s1, s2)
self.assertEqual(len(s1), 10)
self.assertTrue(s1.startswith("TEST"))
self.assertTrue(s2.startswith("TEST"))
# leading/trailing underscores added
self.assertTrue(s1.startswith("TEST_"))
self.assertTrue(s1.endswith("_"))
# no leading/trailing underscores
s1 = self.pw._get_random_job_prefix(leading_trailing_underscores=False)
self.assertFalse(s1.startswith("_"))
self.assertFalse(s1.endswith("_"))
# combo of all parameters
s1 = self.pw._get_random_job_prefix(
leading_trailing_underscores=False, fixed_prefix="HELLO", max_job_prefix_len=12
)
self.assertEqual(len(s1), 12)
self.assertTrue(s1.startswith("HELLO"))
self.assertFalse(s1.endswith("_"))
def test_compute_seqs_per_file(self):
"""compute_seqs_per_file functions as expected
"""
temp_fasta_fp = get_tmp_filename(prefix="QiimeScriptUtilTests", suffix=".fasta")
temp_fasta = [">seq", "AAACCCCAAATTGG"] * 25
open(temp_fasta_fp, "w").write("\n".join(temp_fasta))
actual_25 = self.pw._compute_seqs_per_file(temp_fasta_fp, 25)
actual_2 = self.pw._compute_seqs_per_file(temp_fasta_fp, 2)
actual_10 = self.pw._compute_seqs_per_file(temp_fasta_fp, 10)
actual_5 = self.pw._compute_seqs_per_file(temp_fasta_fp, 5)
actual_40 = self.pw._compute_seqs_per_file(temp_fasta_fp, 40)
remove_files([temp_fasta_fp])
self.assertEqual(actual_25, 1)
self.assertEqual(actual_2, 13)
self.assertEqual(actual_10, 3)
self.assertEqual(actual_5, 5)
self.assertEqual(actual_40, 1)