def test_sample_template_summary_get_req_no_template(self):
# Test sample template not existing
obs = sample_template_get_req(self.new_study.id, '*****@*****.**')
exp = {'status': 'error',
'message': 'Sample template %d does not exist' %
self.new_study.id}
self.assertEqual(obs, exp)
def test_sample_template_get_req_no_access(self):
obs = sample_template_get_req(1, '*****@*****.**')
exp = {
'status': 'error',
'message': 'User does not have access to study'
}
self.assertEqual(obs, exp)
def test_sample_template_columns_get_req_no_template(self):
# Test sample template not existing
obs = sample_template_get_req(self.new_study.id, '*****@*****.**')
exp = {'status': 'error',
'message': 'Sample template %d does not exist' %
self.new_study.id}
self.assertEqual(obs, exp)
def test_sample_template_get_req_no_template(self):
obs = sample_template_get_req(self.new_study.id, '*****@*****.**')
self.assertEqual(
obs, {
'status':
'error',
'message':
'Sample template %d does not '
'exist' % self.new_study.id
})
def test_sample_template_get_req(self):
obs = sample_template_get_req(1, '*****@*****.**')
self.assertCountEqual(obs.keys(), ['status', 'message', 'template'])
self.assertEqual(obs['status'], 'success')
self.assertEqual(obs['message'], '')
self.assertEqual(len(obs['template']), 27)
self.assertEqual(
str(obs['template']['1.SKB2.640194']['collection_timestamp']),
'2011-11-11 13:00:00')
del obs['template']['1.SKB2.640194']['collection_timestamp']
self.assertEqual(
obs['template']['1.SKB2.640194'], {
'physical_specimen_location': 'ANL',
'texture': '64.6 sand, 17.6 silt, 17.8 clay',
'common_name': 'soil metagenome',
'water_content_soil': '0.164',
'env_feature': 'ENVO:plant-associated habitat',
'assigned_from_geo': 'n',
'altitude': '0',
'tot_org_carb': '5',
'env_biome':
'ENVO:Temperate grasslands, savannas, and shrubland '
'biome',
'sample_type': 'ENVO:soil',
'scientific_name': '1118232',
'host_taxid': '3483',
'latitude': '35.2374368957',
'ph': '6.94',
'description_duplicate': 'Burmese bulk',
'elevation': '114',
'description': 'Cannabis Soil Microbiome',
'physical_specimen_remaining': 'true',
'dna_extracted': 'true',
'taxon_id': '410658',
'samp_salinity': '7.15',
'host_subject_id': '1001:B4',
'season_environment': 'winter',
'env_package': 'soil',
'temp': '15',
'qiita_study_id': '1',
'country': 'GAZ:United States of America',
'longitude': '68.5041623253',
'tot_nitro': '1.41',
'depth': '0.15',
'anonymized_name': 'SKB2'
})
def test_sample_template_get_req(self):
obs = sample_template_get_req(1, "*****@*****.**")
self.assertEqual(obs.keys(), ["status", "message", "template"])
self.assertEqual(obs["status"], "success")
self.assertEqual(obs["message"], "")
self.assertEqual(len(obs["template"]), 27)
self.assertEqual(str(obs["template"]["1.SKB2.640194"]["collection_timestamp"]), "11/11/11 13:00:00")
del obs["template"]["1.SKB2.640194"]["collection_timestamp"]
self.assertEqual(
obs["template"]["1.SKB2.640194"],
{
"physical_specimen_location": "ANL",
"texture": "64.6 sand, 17.6 silt, 17.8 clay",
"common_name": "soil metagenome",
"water_content_soil": "0.164",
"env_feature": "ENVO:plant-associated habitat",
"assigned_from_geo": "n",
"altitude": "0",
"tot_org_carb": "5",
"env_biome": "ENVO:Temperate grasslands, savannas, and shrubland " "biome",
"sample_type": "ENVO:soil",
"scientific_name": "1118232",
"host_taxid": "3483",
"latitude": "35.2374368957",
"ph": "6.94",
"description_duplicate": "Burmese bulk",
"elevation": "114",
"description": "Cannabis Soil Microbiome",
"physical_specimen_remaining": "true",
"dna_extracted": "true",
"taxon_id": "410658",
"samp_salinity": "7.15",
"host_subject_id": "1001:B4",
"season_environment": "winter",
"temp": "15",
"qiita_study_id": "1",
"country": "GAZ:United States of America",
"longitude": "68.5041623253",
"tot_nitro": "1.41",
"depth": "0.15",
"anonymized_name": "SKB2",
},
)
def test_sample_template_get_req(self):
obs = sample_template_get_req(1, '*****@*****.**')
self.assertCountEqual(obs.keys(), ['status', 'message', 'template'])
self.assertEqual(obs['status'], 'success')
self.assertEqual(obs['message'], '')
self.assertEqual(len(obs['template']), 27)
self.assertEqual(str(
obs['template']['1.SKB2.640194']['collection_timestamp']),
'2011-11-11 13:00:00')
del obs['template']['1.SKB2.640194']['collection_timestamp']
self.assertEqual(obs['template']['1.SKB2.640194'], {
'physical_specimen_location': 'ANL',
'texture': '64.6 sand, 17.6 silt, 17.8 clay',
'common_name': 'soil metagenome',
'water_content_soil': '0.164',
'env_feature': 'ENVO:plant-associated habitat',
'assigned_from_geo': 'n',
'altitude': '0',
'tot_org_carb': '5',
'env_biome': 'ENVO:Temperate grasslands, savannas, and shrubland '
'biome',
'sample_type': 'ENVO:soil',
'scientific_name': '1118232',
'host_taxid': '3483',
'latitude': '35.2374368957',
'ph': '6.94',
'description_duplicate': 'Burmese bulk',
'elevation': '114',
'description': 'Cannabis Soil Microbiome',
'physical_specimen_remaining': 'true',
'dna_extracted': 'true',
'taxon_id': '410658',
'samp_salinity': '7.15',
'host_subject_id': '1001:B4',
'season_environment': 'winter',
'env_package': 'soil',
'temp': '15',
'qiita_study_id': '1',
'country': 'GAZ:United States of America',
'longitude': '68.5041623253',
'tot_nitro': '1.41',
'depth': '0.15',
'anonymized_name': 'SKB2'})
def test_sample_template_summary_get_req_no_template(self):
# Test sample template not existing
obs = sample_template_get_req(self.new_study.id, "*****@*****.**")
exp = {"status": "error", "message": "Sample template %d does not exist" % self.new_study.id}
self.assertEqual(obs, exp)
def test_sample_template_get_req_no_template(self):
obs = sample_template_get_req(self.new_study.id, "*****@*****.**")
self.assertEqual(
obs, {"status": "error", "message": "Sample template %d does not " "exist" % self.new_study.id}
)
def test_sample_template_get_req_no_access(self):
obs = sample_template_get_req(1, "*****@*****.**")
exp = {"status": "error", "message": "User does not have access to study"}
self.assertEqual(obs, exp)
def test_sample_template_get_req_no_template(self):
obs = sample_template_get_req(self.new_study.id, '*****@*****.**')
self.assertEqual(obs, {'status': 'error',
'message': 'Sample template %d does not '
'exist' % self.new_study.id})
def test_sample_template_get_req_no_access(self):
obs = sample_template_get_req(1, '*****@*****.**')
exp = {'status': 'error',
'message': 'User does not have access to study'}
self.assertEqual(obs, exp)
