def test_fprop(self):
"""
compare `fprop` results for cpu and gpu backends
"""
r = []
for i in xrange(self.N):
max_input_sequence_len = self.rng.random_integers(500)
sequence_len = max_input_sequence_len if i == 0 else self.rng.random_integers(
max_input_sequence_len)
batch_size = self.rng.random_integers(256)
input_dim, hidden_dim = self.rng.random_integers(1500, size=2)
x = [
self.rng.randn(batch_size, input_dim).astype(np.float32)
for _ in xrange(max_input_sequence_len)
]
W = self.get_orthogonal_matrix(input_dim, hidden_dim)
b = self.rng.rand(1, hidden_dim).astype(np.float32)
from quagga.cuda import cudart
cudart.cuda_set_device(1)
qoutput = {}
for reverse in [False, True]:
for with_bias in [False, True]:
for processor_type in ['gpu', 'cpu']:
quagga.processor_type = processor_type
qx = List([Connector(Matrix.from_npa(e)) for e in x])
qW = Connector(Matrix.from_npa(W))
qb = Connector(
Matrix.from_npa(b)) if with_bias else None
seq_dot_block = SequencerBlock(block_class=DotBlock,
params=[qW, qb],
sequences=[qx],
output_names=['output'],
reverse=reverse)
qx.length = sequence_len
qx.fprop()
qW.fprop()
if qb:
qb.fprop()
seq_dot_block.fprop()
qoutput[processor_type] = seq_dot_block.output.to_host(
)
for output_gpu, output_cpu in izip(qoutput['gpu'],
qoutput['cpu']):
if not np.allclose(output_gpu, output_cpu, atol=1e-5):
r.append(False)
break
else:
r.append(True)
self.assertEqual(sum(r), len(r))
def test_bprop(self):
"""
compare `fprop` results for cpu and gpu backends
"""
r = []
for i in xrange(self.N):
max_input_sequence_len = self.rng.random_integers(500)
sequence_len = max_input_sequence_len if i == 0 else self.rng.random_integers(max_input_sequence_len)
batch_size = self.rng.random_integers(256)
input_dim, hidden_dim = self.rng.random_integers(1500, size=2)
x = [self.rng.randn(batch_size, input_dim).astype(np.float32) for _ in xrange(max_input_sequence_len)]
true_labels = [self.rng.randint(hidden_dim, size=(batch_size, 1)).astype(np.int32) for _ in xrange(max_input_sequence_len)]
W = self.get_orthogonal_matrix(input_dim, hidden_dim)
b = self.rng.rand(1, hidden_dim).astype(np.float32)
device_id = 0
quagga_grads = {}
for reverse in [False, True]:
for with_bias in [False, True]:
for processor_type in ['gpu', 'cpu']:
quagga.processor_type = processor_type
qx = List([Connector(Matrix.from_npa(e), device_id) for e in x])
qtrue_labels = List([Connector(Matrix.from_npa(e)) for e in true_labels], len(qx))
qW = Connector(Matrix.from_npa(W), device_id)
qb = Connector(Matrix.from_npa(b), device_id) if with_bias else None
seq_dot_block = SequencerBlock(block_class=DotBlock,
params=[qW, qb],
sequences=[qx],
output_names=['output'],
reverse=reverse)
seq_sce_block = SequencerBlock(block_class=SoftmaxCeBlock,
params=[],
sequences=[seq_dot_block.output, qtrue_labels],
reverse=reverse)
qx.length = sequence_len
qx.fprop()
qtrue_labels.fprop()
qW.fprop()
if qb:
qb.fprop()
seq_dot_block.fprop()
seq_sce_block.fprop()
seq_sce_block.bprop()
seq_dot_block.bprop()
quagga_grads[processor_type] = [qW.backward_matrix.to_host()]
if with_bias:
quagga_grads[processor_type].append(qb.backward_matrix.to_host())
quagga_grads[processor_type].extend(e.backward_matrix.to_host() for e in qx)
for grad_gpu, grad_cpu in izip(quagga_grads['gpu'], quagga_grads['cpu']):
r.append(np.allclose(grad_gpu, grad_cpu, atol=1e-5))
self.assertEqual(sum(r), len(r))
def test_theano_fprop(self):
quagga.processor_type = 'gpu'
r = []
for i in xrange(self.N):
max_input_sequence_len = self.rng.random_integers(500)
sequence_len = max_input_sequence_len if i == 0 else self.rng.random_integers(
max_input_sequence_len)
batch_size = self.rng.random_integers(256)
input_dim, hidden_dim = self.rng.random_integers(1500, size=2)
x = [
self.rng.randn(batch_size, input_dim).astype(np.float32)
for _ in xrange(max_input_sequence_len)
]
W = self.get_orthogonal_matrix(input_dim, hidden_dim)
b = self.rng.rand(1, hidden_dim).astype(np.float32)
for reverse in [False, True]:
for with_bias in [False, True]:
qx = List([Connector(Matrix.from_npa(e)) for e in x])
qW = Connector(Matrix.from_npa(W))
qb = Connector(Matrix.from_npa(b)) if with_bias else None
seq_dot_block = SequencerBlock(block_class=DotBlock,
params=[qW, qb],
sequences=[qx],
output_names=['output'],
reverse=reverse)
qx.length = sequence_len
qx.fprop()
qW.fprop()
if qb:
qb.fprop()
seq_dot_block.fprop()
qoutput = seq_dot_block.output.to_host()
seq_dot_layer = SequentialDotLayer(
W, b if with_bias else None, reverse)
th_x = T.ftensor3()
get_th_output = theano.function(
[th_x], seq_dot_layer.get_output_expr(th_x))
th_output = get_th_output(np.dstack(x[:sequence_len]))
for i in xrange(th_output.shape[0]):
if not np.allclose(qoutput[i], th_output[i]):
r.append(False)
break
else:
r.append(True)
self.assertEqual(sum(r), len(r))
def test_fprop(self):
"""
compare `fprop` results for cpu and gpu backends
"""
r = []
for i in xrange(self.N):
max_input_sequence_len = self.rng.random_integers(500)
sequence_len = max_input_sequence_len if i == 0 else self.rng.random_integers(max_input_sequence_len)
batch_size = self.rng.random_integers(256)
input_dim, hidden_dim = self.rng.random_integers(1500, size=2)
x = [self.rng.randn(batch_size, input_dim).astype(np.float32) for _ in xrange(max_input_sequence_len)]
W = self.get_orthogonal_matrix(input_dim, hidden_dim)
b = self.rng.rand(1, hidden_dim).astype(np.float32)
from quagga.cuda import cudart
cudart.cuda_set_device(1)
qoutput = {}
for reverse in [False, True]:
for with_bias in [False, True]:
for processor_type in ['gpu', 'cpu']:
quagga.processor_type = processor_type
qx = List([Connector(Matrix.from_npa(e)) for e in x])
qW = Connector(Matrix.from_npa(W))
qb = Connector(Matrix.from_npa(b)) if with_bias else None
seq_dot_block = SequencerBlock(block_class=DotBlock,
params=[qW, qb],
sequences=[qx],
output_names=['output'],
reverse=reverse)
qx.length = sequence_len
qx.fprop()
qW.fprop()
if qb:
qb.fprop()
seq_dot_block.fprop()
qoutput[processor_type] = seq_dot_block.output.to_host()
for output_gpu, output_cpu in izip(qoutput['gpu'], qoutput['cpu']):
if not np.allclose(output_gpu, output_cpu, atol=1e-5):
r.append(False)
break
else:
r.append(True)
self.assertEqual(sum(r), len(r))
def test_theano_fprop(self):
quagga.processor_type = 'gpu'
r = []
for i in xrange(self.N):
max_input_sequence_len = self.rng.random_integers(500)
sequence_len = max_input_sequence_len if i == 0 else self.rng.random_integers(max_input_sequence_len)
batch_size = self.rng.random_integers(256)
input_dim, hidden_dim = self.rng.random_integers(1500, size=2)
x = [self.rng.randn(batch_size, input_dim).astype(np.float32) for _ in xrange(max_input_sequence_len)]
W = self.get_orthogonal_matrix(input_dim, hidden_dim)
b = self.rng.rand(1, hidden_dim).astype(np.float32)
for reverse in [False, True]:
for with_bias in [False, True]:
qx = List([Connector(Matrix.from_npa(e)) for e in x])
qW = Connector(Matrix.from_npa(W))
qb = Connector(Matrix.from_npa(b)) if with_bias else None
seq_dot_block = SequencerBlock(block_class=DotBlock,
params=[qW, qb],
sequences=[qx],
output_names=['output'],
reverse=reverse)
qx.length = sequence_len
qx.fprop()
qW.fprop()
if qb:
qb.fprop()
seq_dot_block.fprop()
qoutput = seq_dot_block.output.to_host()
seq_dot_layer = SequentialDotLayer(W, b if with_bias else None, reverse)
th_x = T.ftensor3()
get_th_output = theano.function([th_x], seq_dot_layer.get_output_expr(th_x))
th_output = get_th_output(np.dstack(x[:sequence_len]))
for i in xrange(th_output.shape[0]):
if not np.allclose(qoutput[i], th_output[i]):
r.append(False)
break
else:
r.append(True)
self.assertEqual(sum(r), len(r))
def test_theano_bprop_matrix(self):
r = []
for i in xrange(self.N):
max_input_sequence_len = self.rng.random_integers(300)
sequence_len = max_input_sequence_len if i == 0 else self.rng.random_integers(2, max_input_sequence_len)
embd_dim = self.rng.random_integers(10000)
batch_size = self.rng.random_integers(500)
output_dim = self.rng.random_integers(2000)
W = self.get_orthogonal_matrix(embd_dim, output_dim)
row_idxs = self.rng.randint(embd_dim, size=(batch_size, max_input_sequence_len)).astype(np.int32)
true_labels = [self.rng.randint(output_dim, size=(batch_size, 1)).astype(np.int32) for _ in xrange(max_input_sequence_len)]
device_id = 0
quagga.processor_type = 'gpu'
qrow_idxs = Connector(Matrix.from_npa(row_idxs))
qtrue_labels = List([Connector(Matrix.from_npa(e)) for e in true_labels], qrow_idxs.ncols)
qW = Connector(Matrix.from_npa(W), device_id)
row_slicing_block = RowSlicingBlock(qW, qrow_idxs)
seq_sce_block = SequencerBlock(block_class=SoftmaxCeBlock,
params=[],
sequences=[row_slicing_block.output, qtrue_labels])
qW.fprop()
qrow_idxs.ncols = sequence_len
qrow_idxs.fprop()
row_slicing_block.fprop()
seq_sce_block.fprop()
seq_sce_block.bprop()
row_slicing_block.bprop()
qW.add(Context(), qW.backward_matrix)
th_row_idxs = T.imatrix()
th_true_labels = T.imatrix()
row_slicing_layer = RowSlicingLayer(W)
toutput = row_slicing_layer.get_output_expr(th_row_idxs)
loss = SequentialSoftmaxLayer.get_loss(toutput, th_true_labels)
dL_dW = T.grad(loss, row_slicing_layer.W)
fun = theano.function([th_row_idxs, th_true_labels],
updates=[(row_slicing_layer.W, row_slicing_layer.W + dL_dW)])
fun(row_idxs, np.hstack(true_labels[:sequence_len]))
r.append(np.allclose(qW.to_host(), row_slicing_layer.W.get_value(), atol=1e-5))
self.assertEqual(sum(r), len(r))
def test_bprop_matrix(self):
r = []
for i in xrange(self.N):
max_input_sequence_len = self.rng.random_integers(500)
sequence_len = max_input_sequence_len if i == 0 else self.rng.random_integers(max_input_sequence_len)
embd_dim = self.rng.random_integers(10000)
batch_size = self.rng.random_integers(500)
output_dim = self.rng.random_integers(2000)
W = self.get_orthogonal_matrix(embd_dim, output_dim)
row_idxs = self.rng.randint(embd_dim, size=(batch_size, max_input_sequence_len)).astype(np.int32)
true_labels = [self.rng.randint(output_dim, size=(batch_size, 1)).astype(np.int32) for _ in xrange(max_input_sequence_len)]
device_id = 0
output = {}
for processor_type in ['gpu', 'cpu']:
quagga.processor_type = processor_type
qrow_idxs = Connector(Matrix.from_npa(row_idxs))
qtrue_labels = List([Connector(Matrix.from_npa(e)) for e in true_labels], qrow_idxs.ncols)
qW = Connector(Matrix.from_npa(W), device_id)
row_slicing_block = RowSlicingBlock(qW, qrow_idxs)
seq_sce_block = SequencerBlock(block_class=SoftmaxCeBlock,
params=[],
sequences=[row_slicing_block.output, qtrue_labels])
qW.fprop()
qrow_idxs.ncols = sequence_len
qrow_idxs.fprop()
row_slicing_block.fprop()
seq_sce_block.fprop()
seq_sce_block.bprop()
row_slicing_block.bprop()
qW.add(Context(), qW.backward_matrix)
output[processor_type] = qW.to_host()
r.append(np.allclose(output['gpu'], output['cpu']))
self.assertEqual(sum(r), len(r))
x_device_id=1,
y_device_id=0)
embd_block = RowSlicingBlock(W=p['embd_W'], row_indexes=data_block.x)
f_c_repeat_block = RepeatBlock(p['f_lstm_c0'],
data_block.x.nrows,
axis=0,
device_id=1)
f_h_repeat_block = RepeatBlock(p['f_lstm_h0'],
data_block.x.nrows,
axis=0,
device_id=1)
f_lstm_rnn_block = SequencerBlock(
block_class=LstmBlock,
params=[p['f_lstm_W'], p['f_lstm_R'], None],
sequences=[embd_block.output, data_block.mask],
output_names=['h'],
prev_names=['c', 'h'],
paddings=[f_c_repeat_block.output, f_h_repeat_block.output],
reverse=False,
device_id=1)
s_c_repeat_block = RepeatBlock(p['s_lstm_c0'],
data_block.x.nrows,
axis=0,
device_id=1)
s_h_repeat_block = RepeatBlock(p['s_lstm_h0'],
data_block.x.nrows,
axis=0,
device_id=1)
s_lstm_rnn_block = SequencerBlock(
block_class=LstmBlock,
params=[p['s_lstm_W'], p['s_lstm_R'], None],
def test_bprop(self):
"""
compare `bprop` results for cpu and gpu backends
"""
r = []
for i in xrange(self.N):
max_input_sequence_len = self.rng.random_integers(500)
sequence_len = max_input_sequence_len if i == 0 else self.rng.random_integers(
max_input_sequence_len)
batch_size = self.rng.random_integers(256)
input_dim, hidden_dim = self.rng.random_integers(1500, size=2)
x = [
self.rng.randn(batch_size, input_dim).astype(np.float32)
for _ in xrange(max_input_sequence_len)
]
true_labels = [
self.rng.randint(2, size=(batch_size, 1)).astype(np.float32)
for _ in xrange(max_input_sequence_len)
]
mask = (self.rng.rand(batch_size, sequence_len) < 0.8).astype(
np.float32)
h_0 = self.rng.randn(batch_size, hidden_dim).astype(np.float32)
c_0 = self.rng.randn(batch_size, hidden_dim).astype(np.float32)
W_z = self.get_orthogonal_matrix(input_dim, hidden_dim)
W_i = self.get_orthogonal_matrix(input_dim, hidden_dim)
W_f = self.get_orthogonal_matrix(input_dim, hidden_dim)
W_o = self.get_orthogonal_matrix(input_dim, hidden_dim)
W = np.hstack((W_z, W_i, W_f, W_o))
R_z = self.get_orthogonal_matrix(hidden_dim, hidden_dim)
R_i = self.get_orthogonal_matrix(hidden_dim, hidden_dim)
R_f = self.get_orthogonal_matrix(hidden_dim, hidden_dim)
R_o = self.get_orthogonal_matrix(hidden_dim, hidden_dim)
R = np.hstack((R_z, R_i, R_f, R_o))
lr_W = self.get_orthogonal_matrix(hidden_dim, 1)
lr_b = self.rng.rand(1, 1).astype(dtype=np.float32)
device_id = 0
quagga_grads = {}
for reverse in [False, True]:
for with_mask in [False, True]:
for learn_inital_states in [False, True]:
for processor_type in ['gpu', 'cpu']:
quagga.processor_type = processor_type
context = Context()
qx = List([
Connector(Matrix.from_npa(e), device_id)
for e in x
])
qtrue_labels = List([
Connector(Matrix.from_npa(e))
for e in true_labels
], len(qx))
qmask = Matrix.empty(batch_size, len(qx))
qh_0 = Connector(
Matrix.from_npa(h_0),
device_id if learn_inital_states else None)
qc_0 = Connector(
Matrix.from_npa(c_0),
device_id if learn_inital_states else None)
qW = Connector(Matrix.from_npa(W), device_id)
qR = Connector(Matrix.from_npa(R), device_id)
qlr_W = Connector(Matrix.from_npa(lr_W), device_id)
qlr_b = Connector(Matrix.from_npa(lr_b), device_id)
sequences = [qx]
if with_mask:
sequences.append(
List([
Connector(qmask[:, i])
for i in xrange(len(qx))
], len(qx)))
qmask.assign_npa(context, mask)
qmask = sequences[-1]
else:
sequences.append([None] * len(qx))
lstm = SequencerBlock(block_class=LstmBlock,
params=[qW, qR],
sequences=sequences,
output_names=['h'],
prev_names=['c', 'h'],
paddings=[qc_0, qh_0],
reverse=reverse)
seq_dot_block = SequencerBlock(
block_class=DotBlock,
params=[qlr_W, qlr_b],
sequences=[lstm.h],
output_names=['output'])
seq_sce_block = SequencerBlock(
block_class=SigmoidCeBlock,
params=[],
sequences=[seq_dot_block.output, qtrue_labels
] + ([qmask] if with_mask else []))
qx.length = sequence_len
qx.fprop()
qtrue_labels.fprop()
if with_mask:
qmask.fprop()
qlr_W.fprop()
qlr_b.fprop()
qh_0.fprop()
qc_0.fprop()
qW.fprop()
qR.fprop()
lstm.fprop()
seq_dot_block.fprop()
seq_sce_block.fprop()
seq_sce_block.bprop()
seq_dot_block.bprop()
lstm.bprop()
quagga_grads[processor_type] = [
qlr_b.backward_matrix.to_host(),
qlr_W.backward_matrix.to_host(),
qW.backward_matrix.to_host(),
qR.backward_matrix.to_host()
]
if learn_inital_states:
quagga_grads[processor_type].append(
qc_0.backward_matrix.to_host())
quagga_grads[processor_type].append(
qh_0.backward_matrix.to_host())
quagga_grads[processor_type].extend(
e.backward_matrix.to_host() for e in qx)
for grad_gpu, grad_cpu in izip(quagga_grads['gpu'],
quagga_grads['cpu']):
r.append(np.allclose(grad_gpu, grad_cpu,
atol=1e-6))
self.assertEqual(sum(r), len(r))
seq_embd_block = RowSlicingBlock(p['embd_W'], data_block.sentence_batch)
# remove last in the list
output = List(seq_embd_block.output[:-1], seq_embd_block.output.length - 1)
c_fwd_repeat_block = RepeatBlock(p['lstm_fwd_c0'],
data_block.sentence_batch.nrows,
axis=0,
device_id=0)
h_fwd_repeat_block = RepeatBlock(p['lstm_fwd_h0'],
data_block.sentence_batch.nrows,
axis=0,
device_id=0)
fwd_lstm_block = SequencerBlock(
block_class=LstmBlock,
params=[p['lstm_fwd_W'], p['lstm_fwd_R'], 0.5],
sequences=[output, data_block.mask],
output_names=['h'],
prev_names=['c', 'h'],
paddings=[c_fwd_repeat_block.output, h_fwd_repeat_block.output],
reverse=False,
device_id=0)
# remove first in the list
output = List(seq_embd_block.output[1:], seq_embd_block.output.length - 1)
c_bwd_repeat_block = RepeatBlock(p['lstm_bwd_c0'],
data_block.sentence_batch.nrows,
axis=0,
device_id=0)
h_bwd_repeat_block = RepeatBlock(p['lstm_bwd_h0'],
data_block.sentence_batch.nrows,
axis=0,
device_id=0)
bwd_lstm_block = SequencerBlock(
def test_theano_fprop(self):
quagga.processor_type = 'gpu'
r = []
for i in xrange(self.N):
max_input_sequence_len = self.rng.random_integers(500)
sequence_len = max_input_sequence_len if i == 0 else self.rng.random_integers(
max_input_sequence_len)
batch_size = self.rng.random_integers(256)
input_dim, hidden_dim = self.rng.random_integers(1500, size=2)
x = [
self.rng.randn(batch_size, input_dim).astype(np.float32)
for _ in xrange(max_input_sequence_len)
]
mask = (self.rng.rand(batch_size, sequence_len) < 0.8).astype(
np.float32)
h_0 = self.rng.randn(batch_size, hidden_dim).astype(np.float32)
c_0 = self.rng.randn(batch_size, hidden_dim).astype(np.float32)
W_z = self.get_orthogonal_matrix(input_dim, hidden_dim)
W_i = self.get_orthogonal_matrix(input_dim, hidden_dim)
W_f = self.get_orthogonal_matrix(input_dim, hidden_dim)
W_o = self.get_orthogonal_matrix(input_dim, hidden_dim)
W = np.hstack((W_z, W_i, W_f, W_o))
R_z = self.get_orthogonal_matrix(hidden_dim, hidden_dim)
R_i = self.get_orthogonal_matrix(hidden_dim, hidden_dim)
R_f = self.get_orthogonal_matrix(hidden_dim, hidden_dim)
R_o = self.get_orthogonal_matrix(hidden_dim, hidden_dim)
R = np.hstack((R_z, R_i, R_f, R_o))
for reverse in [False, True]:
for with_mask in [False, True]:
context = Context()
qx = List([Connector(Matrix.from_npa(e)) for e in x])
qmask = Connector(
Matrix.empty(batch_size, len(qx), 'float'))
qh_0 = Connector(Matrix.from_npa(h_0))
qc_0 = Connector(Matrix.from_npa(c_0))
qW = Connector(Matrix.from_npa(W))
qR = Connector(Matrix.from_npa(R))
lstm = SequencerBlock(block_class=LstmBlock,
params=[qW, qR],
sequences=[qx] +
([qmask] if with_mask else []),
output_names=['h'],
prev_names=['c', 'h'],
paddings=[qc_0, qh_0],
reverse=reverse)
qx.length = sequence_len
for e in qx:
e.fprop()
qmask.assign_npa(context, mask)
qmask.fprop()
qh_0.fprop()
qc_0.fprop()
qW.fprop()
qR.fprop()
lstm.fprop()
q_h = lstm.h.to_host()
th_x = T.ftensor3()
lstm_layer = LstmLayer(W, R, c_0, h_0, reverse)
if with_mask:
th_mask = T.fmatrix()
get_th_h = theano.function([th_x, th_mask],
lstm_layer.get_output_expr(
th_x, th_mask))
th_h = get_th_h(np.dstack(x[:sequence_len]),
mask[:, :sequence_len])
else:
get_th_h = theano.function(
[th_x], lstm_layer.get_output_expr(th_x))
th_h = get_th_h(np.dstack(x[:sequence_len]))
for i in xrange(th_h.shape[0]):
if not np.allclose(q_h[i], th_h[i]):
r.append(False)
break
else:
r.append(True)
self.assertEqual(sum(r), len(r))
def test_theano_bprop(self):
quagga.processor_type = 'gpu'
r = []
for i in xrange(self.N):
max_input_sequence_len = self.rng.random_integers(500)
sequence_len = max_input_sequence_len if i == 0 else self.rng.random_integers(
max_input_sequence_len)
batch_size = self.rng.random_integers(256)
input_dim, hidden_dim = self.rng.random_integers(1500, size=2)
x = [
self.rng.randn(batch_size, input_dim).astype(np.float32)
for _ in xrange(max_input_sequence_len)
]
true_labels = [
self.rng.randint(hidden_dim,
size=(batch_size, 1)).astype(np.int32)
for _ in xrange(max_input_sequence_len)
]
W = self.get_orthogonal_matrix(input_dim, hidden_dim)
b = self.rng.rand(1, hidden_dim).astype(np.float32)
device_id = 0
for reverse in [False, True]:
for with_bias in [False, True]:
qx = List(
[Connector(Matrix.from_npa(e), device_id) for e in x])
qtrue_labels = List(
[Connector(Matrix.from_npa(e)) for e in true_labels],
len(qx))
qW = Connector(Matrix.from_npa(W), device_id)
qb = Connector(Matrix.from_npa(b),
device_id) if with_bias else None
seq_dot_block = SequencerBlock(block_class=DotBlock,
params=[qW, qb],
sequences=[qx],
output_names=['output'],
reverse=reverse)
seq_sce_block = SequencerBlock(
block_class=SoftmaxCeBlock,
params=[],
sequences=[seq_dot_block.output, qtrue_labels],
reverse=reverse)
qx.length = sequence_len
qx.fprop()
qtrue_labels.fprop()
qW.fprop()
if qb:
qb.fprop()
seq_dot_block.fprop()
seq_sce_block.fprop()
seq_sce_block.bprop()
seq_dot_block.bprop()
quagga_grads = [qW.backward_matrix.to_host()]
if with_bias:
quagga_grads.append(qb.backward_matrix.to_host())
quagga_grads.append(
[e.backward_matrix.to_host() for e in qx])
seq_dot_layer = SequentialDotLayer(
W, b if with_bias else None, reverse)
seq_sce_layer = SequentialSoftmaxLayer()
th_x = T.ftensor3()
th_true_labels = T.imatrix()
loss = seq_sce_layer.get_loss(
seq_dot_layer.get_output_expr(th_x), th_true_labels)
wrt = [seq_dot_layer.W]
if with_bias:
wrt.append(seq_dot_layer.b)
wrt.append(th_x)
grads = T.grad(loss, wrt)
get_theano_grads = theano.function([th_x, th_true_labels],
grads)
theano_grads = get_theano_grads(
np.dstack(x[:sequence_len]),
np.hstack(true_labels[:sequence_len]))
for quagga_grad, theano_grad in izip(
quagga_grads[:-1], theano_grads[:-1]):
r.append(
np.allclose(quagga_grad, theano_grad, atol=1e-5))
for i in xrange(theano_grads[-1].shape[-1]):
if not np.allclose(quagga_grads[-1][i],
theano_grads[-1][..., i],
atol=1e-5):
r.append(False)
break
else:
r.append(True)
self.assertEqual(sum(r), len(r))
def test_bprop(self):
"""
compare `fprop` results for cpu and gpu backends
"""
r = []
for i in xrange(self.N):
max_input_sequence_len = self.rng.random_integers(500)
sequence_len = max_input_sequence_len if i == 0 else self.rng.random_integers(
max_input_sequence_len)
batch_size = self.rng.random_integers(256)
input_dim, hidden_dim = self.rng.random_integers(1500, size=2)
x = [
self.rng.randn(batch_size, input_dim).astype(np.float32)
for _ in xrange(max_input_sequence_len)
]
true_labels = [
self.rng.randint(hidden_dim,
size=(batch_size, 1)).astype(np.int32)
for _ in xrange(max_input_sequence_len)
]
W = self.get_orthogonal_matrix(input_dim, hidden_dim)
b = self.rng.rand(1, hidden_dim).astype(np.float32)
device_id = 0
quagga_grads = {}
for reverse in [False, True]:
for with_bias in [False, True]:
for processor_type in ['gpu', 'cpu']:
quagga.processor_type = processor_type
qx = List([
Connector(Matrix.from_npa(e), device_id) for e in x
])
qtrue_labels = List([
Connector(Matrix.from_npa(e)) for e in true_labels
], len(qx))
qW = Connector(Matrix.from_npa(W), device_id)
qb = Connector(Matrix.from_npa(b),
device_id) if with_bias else None
seq_dot_block = SequencerBlock(block_class=DotBlock,
params=[qW, qb],
sequences=[qx],
output_names=['output'],
reverse=reverse)
seq_sce_block = SequencerBlock(
block_class=SoftmaxCeBlock,
params=[],
sequences=[seq_dot_block.output, qtrue_labels],
reverse=reverse)
qx.length = sequence_len
qx.fprop()
qtrue_labels.fprop()
qW.fprop()
if qb:
qb.fprop()
seq_dot_block.fprop()
seq_sce_block.fprop()
seq_sce_block.bprop()
seq_dot_block.bprop()
quagga_grads[processor_type] = [
qW.backward_matrix.to_host()
]
if with_bias:
quagga_grads[processor_type].append(
qb.backward_matrix.to_host())
quagga_grads[processor_type].extend(
e.backward_matrix.to_host() for e in qx)
for grad_gpu, grad_cpu in izip(quagga_grads['gpu'],
quagga_grads['cpu']):
r.append(np.allclose(grad_gpu, grad_cpu, atol=1e-5))
self.assertEqual(sum(r), len(r))
dec_lstm_W={'init': H5pyInitializer(model_file_name, 'dec_lstm_W'),
'device_id': 0},
dec_lstm_R={'init': H5pyInitializer(model_file_name, 'dec_lstm_R'),
'device_id': 0},
sce_dot_block_W={'init': H5pyInitializer(model_file_name, 'sce_dot_block_W'),
'device_id': 0},
sce_dot_block_b={'init': H5pyInitializer(model_file_name, 'sce_dot_block_b'),
'device_id': 0})
data_block = DataBlock(train_data, valid_data, 64, word_dropout_prob=0.99, device_id=0)
enc_embd_block = RowSlicingBlock(p['embd_W'], data_block.enc_x)
enc_c_repeat_block = RepeatBlock(p['enc_lstm_c0'], data_block.enc_x.nrows, axis=0, device_id=0)
enc_h_repeat_block = RepeatBlock(p['enc_lstm_h0'], data_block.enc_x.nrows, axis=0, device_id=0)
enc_lstm_block = SequencerBlock(block_class=LstmBlock,
params=[p['enc_lstm_W'], p['enc_lstm_R'], 0.25],
sequences=[enc_embd_block.output, data_block.enc_mask],
output_names=['h'],
prev_names=['c', 'h'],
paddings=[enc_c_repeat_block.output, enc_h_repeat_block.output],
reverse=False,
device_id=0)
dec_embd_block = RowSlicingBlock(p['embd_W'], data_block.dec_x)
dec_c_repeat_block = RepeatBlock(p['dec_lstm_c0'], data_block.enc_x.nrows, axis=0, device_id=0)
last_selector_block = LastSelectorBlock(enc_lstm_block.h)
l2_reg_block = L2RegularizationBlock(last_selector_block.output, 0.001)
dec_lstm_block = SequencerBlock(block_class=LstmBlock,
params=[p['dec_lstm_W'], p['dec_lstm_R'], 0.25],
sequences=[dec_embd_block.output, data_block.dec_mask],
output_names=['h'],
prev_names=['c', 'h'],
paddings=[dec_c_repeat_block.output, last_selector_block.output],
reverse=False,
device_id=0)
def test_theano_bprop(self):
quagga.processor_type = 'gpu'
r = []
for i in xrange(self.N):
max_input_sequence_len = self.rng.random_integers(500)
sequence_len = max_input_sequence_len if i == 0 else self.rng.random_integers(max_input_sequence_len)
batch_size = self.rng.random_integers(256)
input_dim, hidden_dim = self.rng.random_integers(1500, size=2)
x = [self.rng.randn(batch_size, input_dim).astype(np.float32) for _ in xrange(max_input_sequence_len)]
true_labels = [self.rng.randint(hidden_dim, size=(batch_size, 1)).astype(np.int32) for _ in xrange(max_input_sequence_len)]
W = self.get_orthogonal_matrix(input_dim, hidden_dim)
b = self.rng.rand(1, hidden_dim).astype(np.float32)
device_id = 0
for reverse in [False, True]:
for with_bias in [False, True]:
qx = List([Connector(Matrix.from_npa(e), device_id) for e in x])
qtrue_labels = List([Connector(Matrix.from_npa(e)) for e in true_labels], len(qx))
qW = Connector(Matrix.from_npa(W), device_id)
qb = Connector(Matrix.from_npa(b), device_id) if with_bias else None
seq_dot_block = SequencerBlock(block_class=DotBlock,
params=[qW, qb],
sequences=[qx],
output_names=['output'],
reverse=reverse)
seq_sce_block = SequencerBlock(block_class=SoftmaxCeBlock,
params=[],
sequences=[seq_dot_block.output, qtrue_labels],
reverse=reverse)
qx.length = sequence_len
qx.fprop()
qtrue_labels.fprop()
qW.fprop()
if qb:
qb.fprop()
seq_dot_block.fprop()
seq_sce_block.fprop()
seq_sce_block.bprop()
seq_dot_block.bprop()
quagga_grads = [qW.backward_matrix.to_host()]
if with_bias:
quagga_grads.append(qb.backward_matrix.to_host())
quagga_grads.append([e.backward_matrix.to_host() for e in qx])
seq_dot_layer = SequentialDotLayer(W, b if with_bias else None, reverse)
seq_sce_layer = SequentialSoftmaxLayer()
th_x = T.ftensor3()
th_true_labels = T.imatrix()
loss = seq_sce_layer.get_loss(seq_dot_layer.get_output_expr(th_x), th_true_labels)
wrt = [seq_dot_layer.W]
if with_bias:
wrt.append(seq_dot_layer.b)
wrt.append(th_x)
grads = T.grad(loss, wrt)
get_theano_grads = theano.function([th_x, th_true_labels], grads)
theano_grads = get_theano_grads(np.dstack(x[:sequence_len]), np.hstack(true_labels[:sequence_len]))
for quagga_grad, theano_grad in izip(quagga_grads[:-1], theano_grads[:-1]):
r.append(np.allclose(quagga_grad, theano_grad, atol=1e-5))
for i in xrange(theano_grads[-1].shape[-1]):
if not np.allclose(quagga_grads[-1][i], theano_grads[-1][..., i], atol=1e-5):
r.append(False)
break
else:
r.append(True)
self.assertEqual(sum(r), len(r))
def test_fprop(self):
"""
compare `fprop` results for cpu and gpu backends
"""
r = []
for i in xrange(self.N):
max_input_sequence_len = self.rng.random_integers(500)
sequence_len = max_input_sequence_len if i == 0 else self.rng.random_integers(
max_input_sequence_len)
batch_size = self.rng.random_integers(256)
input_dim, hidden_dim = self.rng.random_integers(1500, size=2)
x = [
self.rng.randn(batch_size, input_dim).astype(np.float32)
for _ in xrange(max_input_sequence_len)
]
mask = (self.rng.rand(batch_size, sequence_len) < 0.8).astype(
np.float32)
h_0 = self.rng.randn(batch_size, hidden_dim).astype(np.float32)
c_0 = self.rng.randn(batch_size, hidden_dim).astype(np.float32)
W_z = self.get_orthogonal_matrix(input_dim, hidden_dim)
W_i = self.get_orthogonal_matrix(input_dim, hidden_dim)
W_f = self.get_orthogonal_matrix(input_dim, hidden_dim)
W_o = self.get_orthogonal_matrix(input_dim, hidden_dim)
W = np.hstack((W_z, W_i, W_f, W_o))
R_z = self.get_orthogonal_matrix(hidden_dim, hidden_dim)
R_i = self.get_orthogonal_matrix(hidden_dim, hidden_dim)
R_f = self.get_orthogonal_matrix(hidden_dim, hidden_dim)
R_o = self.get_orthogonal_matrix(hidden_dim, hidden_dim)
R = np.hstack((R_z, R_i, R_f, R_o))
qh = {}
for reverse in [False, True]:
for with_mask in [False, True]:
for processor_type in ['gpu', 'cpu']:
quagga.processor_type = processor_type
context = Context()
qx = List([Connector(Matrix.from_npa(e)) for e in x])
qmask = Matrix.empty(batch_size, len(qx), 'float')
qh_0 = Connector(Matrix.from_npa(h_0))
qc_0 = Connector(Matrix.from_npa(c_0))
qW = Connector(Matrix.from_npa(W))
qR = Connector(Matrix.from_npa(R))
sequences = [qx]
if with_mask:
sequences.append(
List([
Connector(qmask[:, i])
for i in xrange(len(qx))
], len(qx)))
qmask.assign_npa(context, mask)
qmask = sequences[-1]
else:
sequences.append([None] * len(qx))
lstm = SequencerBlock(block_class=LstmBlock,
params=[qW, qR],
sequences=sequences,
output_names=['h'],
prev_names=['c', 'h'],
paddings=[qc_0, qh_0],
reverse=reverse)
qx.length = sequence_len
if with_mask:
qmask.fprop()
qx.fprop()
qh_0.fprop()
qc_0.fprop()
qW.fprop()
qR.fprop()
lstm.fprop()
qh[processor_type] = lstm.h.to_host()
for h_gpu, h_cpu in izip(qh['gpu'], qh['cpu']):
if not np.allclose(h_gpu, h_cpu, rtol=1e-7, atol=1e-3):
r.append(False)
break
else:
r.append(True)
self.assertEqual(sum(r), len(r))
def test_theano_grad(self):
quagga.processor_type = 'gpu'
r = []
for i in xrange(self.N):
max_input_sequence_len = self.rng.random_integers(300)
sequence_len = max_input_sequence_len if i == 0 else self.rng.random_integers(
max_input_sequence_len)
batch_size = self.rng.random_integers(128)
input_dim, hidden_dim, class_num = self.rng.random_integers(1500,
size=3)
x = [
self.rng.randn(batch_size, input_dim).astype(np.float32)
for _ in xrange(max_input_sequence_len)
]
true_labels = [
self.rng.randint(class_num,
size=(batch_size, 1)).astype(np.int32)
for _ in xrange(max_input_sequence_len)
]
mask = (self.rng.rand(batch_size, sequence_len) < 0.8).astype(
np.float32)
h_0 = self.rng.randn(batch_size, hidden_dim).astype(np.float32)
c_0 = self.rng.randn(batch_size, hidden_dim).astype(np.float32)
W_z = self.get_orthogonal_matrix(input_dim, hidden_dim)
W_i = self.get_orthogonal_matrix(input_dim, hidden_dim)
W_f = self.get_orthogonal_matrix(input_dim, hidden_dim)
W_o = self.get_orthogonal_matrix(input_dim, hidden_dim)
W = np.hstack((W_z, W_i, W_f, W_o))
R_z = self.get_orthogonal_matrix(hidden_dim, hidden_dim)
R_i = self.get_orthogonal_matrix(hidden_dim, hidden_dim)
R_f = self.get_orthogonal_matrix(hidden_dim, hidden_dim)
R_o = self.get_orthogonal_matrix(hidden_dim, hidden_dim)
R = np.hstack((R_z, R_i, R_f, R_o))
lr_W = self.get_orthogonal_matrix(hidden_dim, class_num)
lr_b = self.rng.rand(1, class_num).astype(dtype=np.float32)
device_id = 0
for reverse in [False, True]:
for with_mask in [False, True]:
for learn_inital_states in [False, True]:
# quagga model
context = Context()
qx = List([
Connector(Matrix.from_npa(e), device_id) for e in x
])
qtrue_labels = List([
Connector(Matrix.from_npa(e)) for e in true_labels
], qx.length)
qmask = Matrix.empty(batch_size, qx.length, 'float')
qmask_list = [
Connector(qmask[:, i]) for i in xrange(qmask.ncols)
]
qmask = Connector(qmask)
qh_0 = Connector(
Matrix.from_npa(h_0),
device_id if learn_inital_states else None)
qc_0 = Connector(
Matrix.from_npa(c_0),
device_id if learn_inital_states else None)
qW = Connector(Matrix.from_npa(W), device_id)
qR = Connector(Matrix.from_npa(R), device_id)
qlr_W = Connector(Matrix.from_npa(lr_W), device_id)
qlr_b = Connector(Matrix.from_npa(lr_b), device_id)
lstm = SequencerBlock(
block_class=LstmBlock,
params=[qW, qR],
sequences=[
qx,
qmask_list if with_mask else [None] * len(qx)
],
output_names=['h'],
prev_names=['c', 'h'],
paddings=[qc_0, qh_0],
reverse=reverse)
seq_dot_block = SequencerBlock(block_class=DotBlock,
params=[qlr_W, qlr_b],
sequences=[lstm.h],
output_names=['output'])
seq_sce_block = SequencerBlock(
block_class=SoftmaxCeBlock,
params=[],
sequences=[
seq_dot_block.output, qtrue_labels,
qmask_list if with_mask else [None] * len(qx)
])
qx.length = sequence_len
for e in qx:
e.fprop()
for e in qtrue_labels:
e.fprop()
qmask.assign_npa(context, mask)
qmask.fprop()
qlr_W.fprop()
qlr_b.fprop()
qh_0.fprop()
qc_0.fprop()
qW.fprop()
qR.fprop()
lstm.fprop()
seq_dot_block.fprop()
seq_sce_block.fprop()
seq_sce_block.bprop()
seq_dot_block.bprop()
lstm.bprop()
quagga_grads = [
qlr_b.backward_matrix.to_host(),
qlr_W.backward_matrix.to_host(),
qW.backward_matrix.to_host(),
qR.backward_matrix.to_host()
]
if learn_inital_states:
quagga_grads.append(qc_0.backward_matrix.to_host())
quagga_grads.append(qh_0.backward_matrix.to_host())
quagga_grads.append(
[e.backward_matrix.to_host() for e in qx])
del qx
del qlr_b
del qlr_W
del qW
del qR
del qmask
del lstm
del seq_dot_block
del seq_sce_block
# theano model
th_x = T.ftensor3()
th_true_labels = T.imatrix()
th_mask = T.fmatrix()
lstm_layer = LstmLayer(W, R, c_0, h_0, reverse=reverse)
th_h = lstm_layer.get_output_expr(
th_x, th_mask if with_mask else None)
seq_softmax_layer = SequentialSoftmaxLayer(
lr_W, lr_b, reverse)
loss = seq_softmax_layer.get_loss(
th_h, th_true_labels,
th_mask if with_mask else None)
wrt = [
seq_softmax_layer.b, seq_softmax_layer.W,
lstm_layer.W, lstm_layer.R
]
if learn_inital_states:
wrt.append(lstm_layer.c0)
wrt.append(lstm_layer.h0)
wrt.append(th_x)
grads = T.grad(loss, wrt)
if with_mask:
get_theano_grads = theano.function(
[th_x, th_true_labels, th_mask], grads)
theano_grads = get_theano_grads(
np.dstack(x[:sequence_len]),
np.hstack(true_labels[:sequence_len]),
mask[:, :sequence_len])
else:
get_theano_grads = theano.function(
[th_x, th_true_labels], grads)
theano_grads = get_theano_grads(
np.dstack(x[:sequence_len]),
np.hstack(true_labels[:sequence_len]))
for quagga_grad, theano_grad in izip(
quagga_grads[:-1], theano_grads[:-1]):
r.append(
np.allclose(quagga_grad,
theano_grad,
atol=1e-6))
for i in xrange(theano_grads[-1].shape[-1]):
if not np.allclose(quagga_grads[-1][i],
theano_grads[-1][..., i],
atol=1e-6):
r.append(False)
break
else:
r.append(True)
self.assertEqual(sum(r), len(r))
