def _createChildren(self):
self._pointsInBinStat = self._addChild(
CountPointStat(self._region, self._track))
self._pointsGloballyStat = self._addChild(
CountPointStat(self._globalSource, self._track))
self._binSizeStat = self._addChild(
BinSizeStat(self._region, self._track))
self._globalSizeStat = self._addChild(
BinSizeStat(self._globalSource, self._track))
def _createChildren(self):
#TODO: check solution!
#For the tests to work with multiple tracks we must send Track objects in extraTracks.
#Because of the Statistic.constructUniqueKey we must send in a tuple which is hashable.
MultipleRawDataStatistic._createChildren(self)
self._binSizeStat = self._addChild(
BinSizeStat(self._region, self._track2))
def _createChildren(self):
rawStat = self.getRawStatisticClass(self._kwArgs['rawStatistic'])
self._addChild(
rawStat(self._region, self._track,
self._track2 if hasattr(self, '_track2') else None,
**self._kwArgs))
self._addChild(BinSizeStat(self._region, self._track))
def _createChildren(self):
for track in self._tracks:
self._addChild(
RawDataStat(self._region, track, TrackFormatReq(dense=False),
**self._kwArgs))
self._binSizeStat = self._addChild(
BinSizeStat(self._region, self._tracks[0]))
def _createChildren(self):
self._addChild(CountStat(self._region, self._track))
self._addChild(SumStat(self._region, self._track2))
self._addChild(SumInsideStat(self._region, self._track, self._track2))
self._addChild(SumOfSquaresStat(self._region, self._track2))
self._addChild(
SumOfSquaresInsideStat(self._region, self._track, self._track2))
self._addChild(BinSizeStat(self._region, self._track))
def _createChildren(self):
#TODO: check solution!
#For the tests to work with multiple tracks we must send Track objects in extraTracks.
#Because of the Statistic.constructUniqueKey we must send in a tuple which is hashable.
if 'extraTracks' in self._kwArgs:
del self._kwArgs['extraTracks']
self._addChild(RawOverlapCodedEventsStat(self._region, self._track, self._track2, extraTracks = tuple(self._tracks[2:]), **self._kwArgs))
self._binSizeStat = self._addChild( BinSizeStat(self._region, self._track2))
def _createChildren(self):
rawDataStat = RawDataStat(self._region, self._track,
TrackFormatReq(dense=False, interval=False))
self._addChild(rawDataStat)
rawDataStat2 = RawDataStat(self._region, self._track2,
TrackFormatReq(dense=False, interval=True))
self._addChild(rawDataStat2)
self._binSizeStat = self._addChild(
BinSizeStat(self._region, self._track2))
def _createChildren(self):
self._addChild(
RawDataStat(self._region, self._track,
TrackFormatReq(dense=False)))
self._addChild(
RawDataStat(self._region, self._track2,
TrackFormatReq(dense=False)))
self._binSizeStat = self._addChild(
BinSizeStat(self._region, self._track2))
def _createChildren(self):
tracks = self._trackStructure.getQueryTrackList()
t1 = tracks[0]
t2 = tracks[1]
self._addChild(
RawOverlapCodedEventsStat(self._region,
t1,
t2,
extraTracks=tuple(tracks[2:]),
**self._kwArgs))
self._binSizeStat = self._addChild(BinSizeStat(self._region, t1))
def _createChildren(self):
#self._track: defines inside vs outside
#self._track2: provides values
self._addChild(
AggregateOfCoveredBpsInSegmentsStat(self._region,
self._track2,
self._track,
method='sum_of_sum'))
self._addChild(SumOverCoveredBpsStat(self._region, self._track2))
self._addChild(CountStat(self._region, self._track))
self._addChild(BinSizeStat(self._region, self._track))
self._addChild(RawOverlapStat(self._region, self._track, self._track2))
def _createChildren(self):
self._addChild(
CountElementStat(self._region, self._track, **self._kwArgs))
self._addChild(BinSizeStat(self._region, self._track))
def _createChildren(self):
from quick.statistic.StatFacades import TpRawOverlapStat
self._addChild(
TpRawOverlapStat(self._region, self._track, self._track2))
self._addChild(BinSizeStat(self._region, self._track))
def _createChildren(self):
#print self, self.__class__, self.__dict__
self._addChild( RawDataStat(self._region, self._track, TrackFormatReq(dense=False,val='tc')) )
self._addChild( RawDataStat(self._region, self._track2, TrackFormatReq(dense=False)) )
self._binSizeStat = self._addChild( BinSizeStat(self._region, self._track2))
def _createChildren(self):
self._addChild(
ThreeWayCoverageDepthStat(self._region, self._track, self._track2,
**self._kwArgs))
self._addChild(BinSizeStat(self._region, self._track))
def _createChildren(self):
self._addChild(SumOverCoveredBpsStat(self._region, self._track))
self._addChild(BinSizeStat(self._region, self._track))
def _createChildren(self):
# self._addChild( ThreeWayBpOverlapStat(self._region, self._track, self._track2, **self._kwArgs) )
self._addChild(
MultitrackBpOverlapStat(self._region, self._track, self._track2,
**self._kwArgs))
self._addChild(BinSizeStat(self._region, self._track))
def _createChildren(self):
self._addChild(CountPointStat(self._region, self._track))
self._addChild(BinSizeStat(self._region, self._track))
def _createChildren(self):
self._addChild(BinSizeStat(self._region, self._track))
self._addChild(
RawDataStat(self._region, self._track,
TrackFormatReq(val='number', dense=True)))
def _createChildren(self):
self._addChild(
ThreeWayExpectedBpOverlapStat(self._region, self._track,
self._track2, **self._kwArgs))
self._addChild(BinSizeStat(self._region, self._track))
def _createChildren(self):
self._addChild(
RawDataStat(self._region, self._track,
TrackFormatReq(interval=False, dense=False)))
self._addChild(BinSizeStat(self._region, self._track))
def _createChildren(self):
self._addChild(
MultitrackCoverageDepthStat(self._region, self._track,
self._track2, **self._kwArgs))
self._binSizeStat = self._addChild(
BinSizeStat(self._region, self._track))
def _createChildren(self):
self._addChild(
ThreeWayExpectedBpOverlapGivenBinPresenceAsWholeBpsStat(
self._region, self._track, self._track2, **self._kwArgs))
self._addChild(BinSizeStat(self._region, self._track))
def _createChildren(self):
self._addChild(
RawRipleysKStat(self._region, self._track, **self._kwArgs))
self._addChild(BinSizeStat(self._region, self._track))
def _createChildren(self):
self._addChild(
ThreeWayBpOverlapVegardAndKaiVersionWrapperStat(
self._region, self._track, self._track2, **self._kwArgs))
self._addChild(BinSizeStat(self._region, self._track))
def _createChildren(self):
self._addChild(BpCoverageByCatStat(self._region, self._track))
self._addChild(BinSizeStat(self._region, self._track))
def _createChildren(self):
self._addChild(
RawDataStat(self._region, self._track,
TrackFormatReq(dense=False, interval=False)))
self._addChild(BinSizeStat(self._region, self._track))
self._addChild(CountPointStat(self._globalSource, self._track))
