def getAUIMapDict(self):
"""
Returns:
dict: {AUI: {'code': code, 'eng': ENG, 'cns': CNS)}
"""
ICD10_CNSGOV = readICD10_4Digit(DATA_PATH+'/thesaurus/cn/ICD-10/cn-gov/4位代码亚目表(ICD-10).xls')
ICD10CM_CNSTW = json.load(open(DATA_PATH+'/thesaurus/cn/ICD-10/cn-tw/CNSTW.json'))
ICD10CM_ENGCDC = readICD_ENSCDC_TXT(DATA_PATH+'/thesaurus/en/ICD10/CDC/icd10cm_order_2017.txt')
UMLSDataList = readUMLS_ENG(DATA_PATH+'/umlsMT/umls/MRCONSO.RRF')
mapDict = {}
for uTermDict in UMLSDataList:
if (uTermDict['SAB']== 'ICD10AM' or uTermDict['SAB'] == 'ICD10CM' or uTermDict['SAB'] == 'ICD10' or uTermDict['SAB'] == 'ICD10AMAE'):
AUI = uTermDict['AUI']
code = uTermDict['CODE']
ENG = uTermDict['STR']
CNS = None
if code in ICD10_CNSGOV: #优先采用ICD10_CNSGOV
if code in ICD10CM_ENGCDC: #能双保险验证则双保险验证
if sameTerm(ENG, ICD10CM_ENGCDC[code]):
CNS = ICD10_CNSGOV[code]
else:
CNS = ICD10_CNSGOV[code]
elif code in ICD10CM_CNSTW:
if sameTerm(ENG, ICD10CM_CNSTW[code]['eng']): #双保险
CNS = ICD10CM_CNSTW[code]['cns']
if CNS:
mapDict[AUI] = ({'code': code, 'eng': ENG, 'cns': CNS})
return mapDict
def getAUIMapDict(self):
"""
Returns:
dict: {AUI: {'code': code, 'eng': ENG, 'cns': CNS)}
"""
SNOMEDDataDict = readSNOMED_CNSCMIA_TXT(
DATA_PATH + '/thesaurus/cn/SNOMED/CMIA/英汉对照国际医学规范术语全集-精选本.txt')
UMLSDataList = readUMLS_ENG(DATA_PATH + '/umlsMT/umls/MRCONSO.RRF')
mapDict = {}
mapDict.update(self.getAUIMapDict1(SNOMEDDataDict, UMLSDataList))
mapDict.update(self.getAUIMapDict2(SNOMEDDataDict, UMLSDataList))
return mapDict
def getAUIMapDict(self):
"""
Returns:
dict: {AUI: {'code': code, 'eng': ENG, 'cns': CNS)}
"""
SNOMEDDataDict = readSNOMED_CNSBDWK_XLSX(
DATA_PATH + '/thesaurus/cn/SNOMED/BDWK/snomed对照表.xlsx')
UMLSDataList = readUMLS_ENG(DATA_PATH + '/umlsMT/umls/MRCONSO.RRF')
mapDict = {}
mapDict.update(self.getAUIMapDict1(SNOMEDDataDict, UMLSDataList))
mapDict.update(self.getAUIMapDict2(SNOMEDDataDict, UMLSDataList))
return mapDict
def getAUIMapDict(self):
"""
Returns:
dict: {AUI: {'code': code, 'eng': ENG, 'cns': CNS)}
"""
HPODataDict = readCHPO(DATA_PATH+'/thesaurus/cn/HPO/chpo.2016-10.xls')
UMLSDataList = readUMLS_ENG(DATA_PATH+'/umlsMT/umls/MRCONSO.RRF')
mapDict = {}
for uTermDict in UMLSDataList:
if uTermDict['SAB']== 'HPO' and uTermDict['CODE'] in HPODataDict:
AUI = uTermDict['AUI']
code = uTermDict['CODE']
ENG = uTermDict['STR']
CNS = HPODataDict[code]['cns']
assert AUI not in mapDict #检查是否有多个AUI映射到同一个hpo
mapDict[AUI] = ({'code': code, 'eng': ENG, 'cns': CNS})
return mapDict
def getAUIMapDict(self):
"""
Returns:
dict: {AUI: {'code': code, 'eng': ENG, 'cns': CNS)}
"""
MeSHDataDict = readMESH_CNSCHISC(
DATA_PATH+'/thesaurus/cn/MeSH/chisc/Mesh-医学主题词表.txt',
DATA_PATH+'/thesaurus/en/NLM/ascii/d2017.bin'
)
UMLSDataList = readUMLS_ENG(DATA_PATH+'/umlsMT/umls/MRCONSO.RRF')
mapDict = {}
for uTermDict in UMLSDataList:
if uTermDict['SAB']== 'MSH' and uTermDict['CODE'] in MeSHDataDict:
AUI = uTermDict['AUI']
code = uTermDict['CODE']
ENG = uTermDict['STR']
CNS = MeSHDataDict[code]
assert AUI not in mapDict #检查是否有多个AUI映射到同一个hpo
mapDict[AUI] = ({'code': code, 'eng': ENG, 'cns': CNS})
return mapDict
def getAUIMapDict(self):
"""
Returns:
dict: {AUI: {'code': code, 'eng': ENG, 'cns': CNS)}
"""
termCNSICIBA = json.load(
open(DATA_PATH + '/umlsMT/translate/termCNSICIBA.json'))
AUI = json.load(open(DATA_PATH + '/umlsMT/translate/AUI.json'))
UMLSDataList = readUMLS_ENG(DATA_PATH + '/umlsMT/umls/MRCONSO.RRF')
getContentFunc = self.getUsefulContent # getFullContent
UMLSDataDict = {termDict['AUI']: termDict for termDict in UMLSDataList}
mapDict = {}
for i in range(len(termCNSICIBA)):
CNS = getContentFunc(termCNSICIBA[i])
if CNS:
for aui in AUI[i]:
code = UMLSDataDict[aui]['CODE']
ENG = UMLSDataDict[aui]['STR']
mapDict[aui] = {'code': code, 'eng': ENG, 'cns': CNS}
return mapDict