def insert_file(self,myfilestr=r'c:\sqltest\\mnl1p004.ng5'):
mydatareader=readncnr.datareader()
mydata=mydatareader.readbuffer(myfilestr)
print mydata.metadata['file_info']['filename']
#insert file into database
s='insert into catalog VALUES(NULL,?,NULL,0)'
splacevalues=(mydata.metadata['file_info']['filename'],)
file_id=sqlexecute(self.conn,s,splacevalues)
print 'catalog instantiated'
for tablename, tablevalues in mydata.data.iteritems():
s='insert into fields VALUES(NULL,?,?)'
sparams=(file_id, tablename)
field_id=sqlexecute(self.conn,s,sparams)
print 'inserted %s into field table'%(tablename,)
if isinstance(tablevalues,list):
for point_num in N.arange(len(tablevalues)):
if tablename=='detector':
s='insert into measurement VALUES (NULL,?,?,?,?,?)'
sparams=(file_id,field_id,point_num,tablevalues[point_num],N.sqrt(tablevalues[point_num]))
else:
s='insert into measurement VALUES (NULL,?,?,?,?,NULL)'
sparams=(file_id,field_id,point_num,tablevalues[point_num])
sqlexecute(self.conn,s,sparams)
self.create_meta_tables(mydata.metadata,file_id)
return
def insert_file(self, myfilestr=r'c:\sqltest\\mnl1p004.ng5'):
mydatareader = readncnr.datareader()
mydata = mydatareader.readbuffer(myfilestr)
print mydata.metadata['file_info']['filename']
#insert file into database
s = 'insert into catalog VALUES(NULL,?,NULL,0)'
splacevalues = (mydata.metadata['file_info']['filename'], )
file_id = sqlexecute(self.conn, s, splacevalues)
print 'catalog instantiated'
for tablename, tablevalues in mydata.data.iteritems():
s = 'insert into fields VALUES(NULL,?,?)'
sparams = (file_id, tablename)
field_id = sqlexecute(self.conn, s, sparams)
print 'inserted %s into field table' % (tablename, )
if isinstance(tablevalues, list):
for point_num in N.arange(len(tablevalues)):
if tablename == 'detector':
s = 'insert into measurement VALUES (NULL,?,?,?,?,?)'
sparams = (file_id, field_id, point_num,
tablevalues[point_num],
N.sqrt(tablevalues[point_num]))
else:
s = 'insert into measurement VALUES (NULL,?,?,?,?,NULL)'
sparams = (file_id, field_id, point_num,
tablevalues[point_num])
sqlexecute(self.conn, s, sparams)
self.create_meta_tables(mydata.metadata, file_id)
return
def read_order_files(flist):
# myfilebaseglob=myfilebase+'*.'+myend
# print myfilebaseglob
# flist = SU.ffind(mydirectory, shellglobs=(myfilebaseglob,))
#SU.printr(flist)
mydatareader=readncnr.datareader()
H=[]#N.array([])
I=[]#N.array([])
Ierr=[]#N.array([])
monlist=[]
count=0
mon0=5.0e4
a4list=[]
for currfile in flist:
#print currfile
mydata=mydatareader.readbuffer(currfile)
#if count==0:
# #mon0=mydata.header['count_info']['monitor']
# mon0=5.0e4
mon=mydata.metadata['count_info']['monitor']
if count==0:
mon0=mon
#print count, mon0,mon
#temp=N.concatenate((temp,N.array(mydata.data['temp'])))
H.append(N.array(mydata.data['magfield'],'float64'))
psd_detectors=mydata.metadata['count_info']['AnalyzerDetectorDevicesOfInterest'.lower()]
psd_arr=[]
a4_center=[]
a4=N.array(mydata.data['a4'],'float64')
for psd in psd_detectors:
psd_arr.append(N.array(mydata.data[psd],'float64'))
a4_center.append(a4)
#print 'loop done'
psd_arr=N.array(psd_arr,'float64')
effs=N.tile(psd_channel_efficiency,(1,psd_arr.shape[1]))
Ierr.append(N.sqrt(psd_arr)*effs*mon0/mon)
#print 'psdarr shape ',psd_arr.shape
#print 'new shape ',N.tile(psd_channel_efficiency,(1,psd_arr.shape[1])).shape
psd_arr=psd_arr*effs*mon0/mon
a4_center_arr=N.array(a4_center)
#print psd_arr.shape
#print a4_center_arr.shape
#print psd_a4_offset
#print N.tile(psd_a4_offset,(1,a4.shape[0])).shape
a4_corrected=a4_center_arr+N.tile(psd_a4_offset,(1,a4.shape[0]))
#print a4_corrected
a4list.append(a4_corrected)
#It=N.array(N.array(mydata.data['detector']),'float64')
#Iterr=N.sqrt(It)
monlist.append(mon)
I.append(psd_arr)
#Ierr.append(N.sqrt(psd_arr))
count=count+1
return N.array(H),N.array(I),N.array(Ierr),N.array(monlist),N.array(a4list)
def readmeshfiles_direct(mydirectory,myfilebase,myend):
myfilebaseglob=myfilebase+'*.'+myend
print myfilebaseglob
flist = SU.ffind(mydirectory, shellglobs=(myfilebaseglob,))
#SU.printr(flist)
mydatareader=readncnr.datareader()
Qx=N.array([])
Qy=N.array([])
Qz=N.array([])
Counts=N.array([])
for currfile in flist:
print currfile
mydata=mydatareader.readbuffer(currfile)
Qx=N.concatenate((Qx,N.array(mydata.data['qx'])))
Qy=N.concatenate((Qy,N.array(mydata.data['qy'])))
Qz=N.concatenate((Qz,N.array(mydata.data['qz'])))
Counts=N.concatenate((Counts,N.array(mydata.data['counts'])))
#xa,ya,za=prep_data2(Qx,Qy,Counts);
return Qx,Qz,Counts
def readmeshfiles(mydirectory, myfilebase, myend):
myfilebaseglob = myfilebase + "*." + myend
print myfilebaseglob
flist = SU.ffind(mydirectory, shellglobs=(myfilebaseglob,))
# SU.printr(flist)
mydatareader = readncnr.datareader()
Qx = N.array([])
Qy = N.array([])
Qz = N.array([])
Counts = N.array([])
for currfile in flist:
print currfile
mydata = mydatareader.readbuffer(currfile)
Qx = N.concatenate((Qx, N.array(mydata.data["qx"])))
Qy = N.concatenate((Qy, N.array(mydata.data["qy"])))
Qz = N.concatenate((Qz, N.array(mydata.data["qz"])))
Counts = N.concatenate((Counts, N.array(mydata.data["detector"])))
xa, ya, za = prep_data2(Qx, Qy, Counts)
return xa, ya, za
def readmeshfiles_direct(mydirectory, myfilebase, myend):
myfilebaseglob = myfilebase + '*.' + myend
print myfilebaseglob
flist = SU.ffind(mydirectory, shellglobs=(myfilebaseglob, ))
#SU.printr(flist)
mydatareader = readncnr.datareader()
Qx = N.array([])
Qy = N.array([])
Qz = N.array([])
Counts = N.array([])
for currfile in flist:
print currfile
mydata = mydatareader.readbuffer(currfile)
Qx = N.concatenate((Qx, N.array(mydata.data['qx'])))
Qy = N.concatenate((Qy, N.array(mydata.data['qy'])))
Qz = N.concatenate((Qz, N.array(mydata.data['qz'])))
Counts = N.concatenate((Counts, N.array(mydata.data['counts'])))
#xa,ya,za=prep_data2(Qx,Qy,Counts);
return Qx, Qz, Counts
def read_order_files(mydirectory,myfilebase,myend):
myfilebaseglob=myfilebase+'*.'+myend
# print myfilebaseglob
flist = SU.ffind(mydirectory, shellglobs=(myfilebaseglob,))
#SU.printr(flist)
mydatareader=readncnr.datareader()
temp=[]#N.array([])
I=[]#N.array([])
Ierr=[]#N.array([])
monlist=[]
count=0
mon0=5.0e4
for currfile in flist:
#print currfile
mydata=mydatareader.readbuffer(currfile)
#if count==0:
# #mon0=mydata.header['count_info']['monitor']
# mon0=5.0e4
mon=mydata.metadata['count_info']['monitor']
#print count, mon0,mon
#temp=N.concatenate((temp,N.array(mydata.data['temp'])))
temp.append(N.array(mydata.data['temp'],'float64'))
It=N.array(N.array(mydata.data['counts']),'float64')
Iterr=N.sqrt(It)
#It=It*mon0/mon
monlist.append(mon)
I.append(It)
Ierr.append(Iterr)
#Iterr=Iterr*mon0/mon
#I=N.concatenate((I,It))
#Ierr=N.concatenate((Ierr,Iterr))
#print I
#print Iterr
#xa,ya,za=prep_data2(Qx,Qy,Counts);
count=count+1
return temp,I,Ierr,monlist
def read_order_files(mydirectory, myfilebase, myend):
myfilebaseglob = myfilebase + '*.' + myend
# print myfilebaseglob
flist = SU.ffind(mydirectory, shellglobs=(myfilebaseglob, ))
#SU.printr(flist)
mydatareader = readncnr.datareader()
temp = [] #N.array([])
I = [] #N.array([])
Ierr = [] #N.array([])
monlist = []
count = 0
mon0 = 5.0e4
for currfile in flist:
#print currfile
mydata = mydatareader.readbuffer(currfile)
#if count==0:
# #mon0=mydata.header['count_info']['monitor']
# mon0=5.0e4
mon = mydata.metadata['count_info']['monitor']
#print count, mon0,mon
#temp=N.concatenate((temp,N.array(mydata.data['temp'])))
temp.append(N.array(mydata.data['temp'], 'float64'))
It = N.array(N.array(mydata.data['counts']), 'float64')
Iterr = N.sqrt(It)
#It=It*mon0/mon
monlist.append(mon)
I.append(It)
Ierr.append(Iterr)
#Iterr=Iterr*mon0/mon
#I=N.concatenate((I,It))
#Ierr=N.concatenate((Ierr,Iterr))
#print I
#print Iterr
#xa,ya,za=prep_data2(Qx,Qy,Counts);
count = count + 1
return temp, I, Ierr, monlist
mydirectory=r'c:\BiFeO3xtal\Oct9_2007'
myfilebase='bfo_spinflip_he3flip51585'
myfilebase2='bfo_spinflip51579'
myfilebase3='bfo_spinflip51583'
myend='bt7'
data={}
#pm
myfilebaseglob=myfilebase+'*.'+myend
print myfilebaseglob
flist = SU.ffind(mydirectory, shellglobs=(myfilebaseglob,))
myfilestr=flist[0]
Counts=N.array([],'float64')
monlist=[]
timestamp={}
mydatareader=readncnr.datareader()
mydata=mydatareader.readbuffer(myfilestr)
S1=N.array(mydata.data['a3'][1:])
S2=N.array(mydata.data['a4'][1:])
A2=N.array(mydata.data['a5'][1:])*2
M2=N.array(mydata.data['a2'][1:])
Counts_pm=N.concatenate((Counts,N.array(mydata.data['detector'][1:])))
H_pm,K_pm,L_pm,E_pm,Q_pm,Ei_pm,Ef_pm=mylattice.SpecWhere(myradians(M2),myradians(S1),myradians(S2),myradians(A2),setup)
monlist.append(mydata.data['monitor'][0])
Counts_pm=Counts_pm[:-1]
H_pm=H_pm[:-1]
K_pm=K_pm[:-1]
L_pm=L_pm[:-1]
E_pm=E_pm[:-1]
Q_pm=Q_pm[:-1]
Ei_pm=Ei_pm[:-1]