def test_person_form_event(self):
redi.logger.info("Running " + __name__ +
"#test_person_form_event() using xml: ")
string_1_xml = """
<person_form_event>
<person>
<study_id>100</study_id>
<all_form_events>
<form>
<name>cbc</name>
<event>
<name>1_arm_1</name>
<field>
<name>cbc_lbdtc</name>
<value>1905-10-01</value>
</field>
</event>
</form>
<form>
<name>inr</name>
<event>
<name>1_arm_1</name>
<field>
<name>cbc_lbdtc</name>
<value>1905-10-01</value>
</field>
</event>
</form>
</all_form_events>
</person>
<person>
<study_id>99</study_id>
<all_form_events>
<form>
<name>cbc</name>
<event>
<name>1_arm_1</name>
<field>
<name>cbc_lbdtc</name>
<value>1905-10-01</value>
</field>
<field>
<name>wbc_lborres</name>
<value>3.0</value>
</field>
<field>
<name>wbc_lbstat</name>
<value/>
</field>
<field>
<name>neut_lborres</name>
<value>500</value>
</field>
<field>
<name>neut_lbstat</name>
<value/>
</field>
</event>
</form>
<form>
<name>inr</name>
<event>
<name>1_arm_1</name>
<field>
<name>inr_lbdtc</name>
<value>1906-12-01</value>
</field>
<field>
<name>inr_lborres</name>
<value/>
</field>
<field>
<name>inr_lbstat</name>
<value>NOT_DONE</value>
</field>
</event>
</form>
</all_form_events>
</person>
<person>
<study_id>98</study_id>
<all_form_events>
<form>
<name>cbc</name>
<event>
<name>1_arm_1</name>
<field>
<name>cbc_lbdtc</name>
<value></value>
</field>
</event>
</form>
<form>
<name>inr</name>
<event>
<name>1_arm_1</name>
<field>
<name>cbc_lbdtc</name>
<value>1905-10-01</value>
</field>
</event>
</form>
</all_form_events>
</person>
</person_form_event>
"""
#date_format = "%Y-%m-%d"
#earliest_date = datetime.datetime.strptime('1905-10-01', date_format).date()
#latest_date = datetime.datetime.strptime('1906-10-01', date_format).date()
form_details = {'Total_cbc_Forms': 2, 'Total_inr_Forms': 3}
subject_details = {
'98': {
'Total_cbc_Forms': 0,
'Total_inr_Forms': 1
},
'99': {
'Total_cbc_Forms': 1,
'Total_inr_Forms': 1
},
'100': {
'Total_cbc_Forms': 1,
'Total_inr_Forms': 1
}
}
report_data = {
'total_subjects': 3,
'form_details': form_details,
'subject_details': subject_details,
'errors': []
}
redcap_settings = {
'rate_limiter_value_in_redcap': 500,
'redcap_uri': 'http://*****:*****@example.com',
'redcap_uri': 'http://*****:*****@example.com'
}
class MockDataRepository(object):
def store(self, data):
pass
etree_1 = etree.ElementTree(etree.fromstring(string_1_xml))
result = redi_lib.generate_output(etree_1, redcap_settings,
email_settings, MockDataRepository())
self.assertEqual(report_data['total_subjects'],
result['total_subjects'])
self.assertEqual(report_data['form_details'], result['form_details'])
self.assertEqual(report_data['subject_details'],
result['subject_details'])
self.assertEqual(report_data['errors'], result['errors'])
def test_person_form_event(self):
redi.logger.info("Running " + __name__ + "#test_person_form_event() using xml: ")
string_1_xml = """
<person_form_event>
<person>
<study_id>100</study_id>
<all_form_events>
<form>
<name>cbc</name>
<event>
<name>1_arm_1</name>
<field>
<name>cbc_lbdtc</name>
<value>1905-10-01</value>
</field>
</event>
</form>
<form>
<name>inr</name>
<event>
<name>1_arm_1</name>
<field>
<name>cbc_lbdtc</name>
<value>1905-10-01</value>
</field>
</event>
</form>
</all_form_events>
</person>
<person>
<study_id>99</study_id>
<all_form_events>
<form>
<name>cbc</name>
<event>
<name>1_arm_1</name>
<field>
<name>cbc_lbdtc</name>
<value>1905-10-01</value>
</field>
<field>
<name>wbc_lborres</name>
<value>3.0</value>
</field>
<field>
<name>wbc_lbstat</name>
<value/>
</field>
<field>
<name>neut_lborres</name>
<value>500</value>
</field>
<field>
<name>neut_lbstat</name>
<value/>
</field>
</event>
</form>
<form>
<name>inr</name>
<event>
<name>1_arm_1</name>
<field>
<name>inr_lbdtc</name>
<value>1906-12-01</value>
</field>
<field>
<name>inr_lborres</name>
<value/>
</field>
<field>
<name>inr_lbstat</name>
<value>NOT_DONE</value>
</field>
</event>
</form>
</all_form_events>
</person>
<person>
<study_id>98</study_id>
<all_form_events>
<form>
<name>cbc</name>
<event>
<name>1_arm_1</name>
<field>
<name>cbc_lbdtc</name>
<value></value>
</field>
</event>
</form>
<form>
<name>inr</name>
<event>
<name>1_arm_1</name>
<field>
<name>cbc_lbdtc</name>
<value>1905-10-01</value>
</field>
</event>
</form>
</all_form_events>
</person>
</person_form_event>
"""
form_details = {"Total_cbc_Forms": 2, "Total_inr_Forms": 3}
subject_details = {
"98": {"Total_cbc_Forms": 0, "Total_inr_Forms": 1},
"99": {"Total_cbc_Forms": 1, "Total_inr_Forms": 1},
"100": {"Total_cbc_Forms": 1, "Total_inr_Forms": 1},
}
report_data = {
"total_subjects": 3,
"form_details": form_details,
"subject_details": subject_details,
"errors": [],
}
class MockDataRepository(object):
def store(self, data):
pass
class MockRedcapClient(RedcapClient):
def __init__(self):
self.project = TestGenerateOutput.dummyClass()
def get_data_from_redcap(
self,
records_to_fetch=None,
events_to_fetch=None,
fields_to_fetch=None,
forms_to_fetch=None,
return_format="xml",
):
raise NotImplementedError()
def send_data_to_redcap(self, data, overwrite=False):
return """Data sent"""
etree_1 = etree.ElementTree(etree.fromstring(string_1_xml))
result = redi_lib.generate_output(etree_1, MockRedcapClient(), 500, MockDataRepository())
self.assertEqual(report_data["total_subjects"], result["total_subjects"])
self.assertEqual(report_data["form_details"], result["form_details"])
self.assertEqual(report_data["subject_details"], result["subject_details"])
self.assertEqual(report_data["errors"], result["errors"])
def test_person_form_event(self):
redi.logger.info("Running " + __name__
+ "#test_person_form_event() using xml: " )
string_1_xml = """
<person_form_event>
<person>
<study_id>100</study_id>
<all_form_events>
<form>
<name>cbc</name>
<event>
<name>1_arm_1</name>
<field>
<name>cbc_lbdtc</name>
<value>1905-10-01</value>
</field>
</event>
</form>
<form>
<name>inr</name>
<event>
<name>1_arm_1</name>
<field>
<name>cbc_lbdtc</name>
<value>1905-10-01</value>
</field>
</event>
</form>
</all_form_events>
</person>
<person>
<study_id>99</study_id>
<all_form_events>
<form>
<name>cbc</name>
<event>
<name>1_arm_1</name>
<field>
<name>cbc_lbdtc</name>
<value>1905-10-01</value>
</field>
<field>
<name>wbc_lborres</name>
<value>3.0</value>
</field>
<field>
<name>wbc_lbstat</name>
<value/>
</field>
<field>
<name>neut_lborres</name>
<value>500</value>
</field>
<field>
<name>neut_lbstat</name>
<value/>
</field>
</event>
</form>
<form>
<name>inr</name>
<event>
<name>1_arm_1</name>
<field>
<name>inr_lbdtc</name>
<value>1906-12-01</value>
</field>
<field>
<name>inr_lborres</name>
<value/>
</field>
<field>
<name>inr_lbstat</name>
<value>NOT_DONE</value>
</field>
</event>
</form>
</all_form_events>
</person>
<person>
<study_id>98</study_id>
<all_form_events>
<form>
<name>cbc</name>
<event>
<name>1_arm_1</name>
<field>
<name>cbc_lbdtc</name>
<value></value>
</field>
</event>
</form>
<form>
<name>inr</name>
<event>
<name>1_arm_1</name>
<field>
<name>cbc_lbdtc</name>
<value>1905-10-01</value>
</field>
</event>
</form>
</all_form_events>
</person>
</person_form_event>
"""
#date_format = "%Y-%m-%d"
#earliest_date = datetime.datetime.strptime('1905-10-01', date_format).date()
#latest_date = datetime.datetime.strptime('1906-10-01', date_format).date()
form_details = {'Total_cbc_Forms': 2, 'Total_inr_Forms': 3}
subject_details = {
'98' : {'Total_cbc_Forms' : 0, 'Total_inr_Forms' : 1 },
'99' : {'Total_cbc_Forms' : 1, 'Total_inr_Forms' : 1 },
'100' : {'Total_cbc_Forms' : 1, 'Total_inr_Forms' : 1 }
}
report_data = {
'total_subjects' : 3,
'form_details' : form_details,
'subject_details' : subject_details,
'errors' : []
}
redcap_settings = {
'rate_limiter_value_in_redcap':500,
'redcap_uri':'http://*****:*****@example.com',
'redcap_uri': 'http://*****:*****@example.com'
}
class MockDataRepository(object):
def store(self, data):
pass
etree_1 = etree.ElementTree(etree.fromstring(string_1_xml))
result = redi_lib.generate_output(etree_1, redcap_settings, email_settings, MockDataRepository())
self.assertEqual(report_data['total_subjects'], result['total_subjects'])
self.assertEqual(report_data['form_details'], result['form_details'])
self.assertEqual(report_data['subject_details'], result['subject_details'])
self.assertEqual(report_data['errors'], result['errors'])