def reduction_script(request, reduction_id, instrument_name):
"""
Display a script representation of a reduction process.
@param request: request object
@param reduction_id: pk of the ReductionProcess object
"""
logger.debug("Reduction: %s instrument_name=%s"%(inspect.stack()[0][3],instrument_name))
instrument_name_lowercase = str.lower(str(instrument_name))
instrument_forms = view_util.import_module_from_app(instrument_name_lowercase,'forms')
data = instrument_forms.ReductionOptions.data_from_db(request.user, reduction_id)
breadcrumbs = Breadcrumbs()
breadcrumbs.append_reduction(instrument_name_lowercase)
breadcrumbs.append("reduction %s"%reduction_id,".")
breadcrumbs.append("script")
template_values = {'reduction_name': data['reduction_name'],
'breadcrumbs': breadcrumbs,
'code': instrument_forms.ReductionOptions.as_mantid_script(data) }
template_values = reduction_server.view_util.fill_template_values(request, **template_values)
logger.debug(pprint.pformat(template_values))
return render_to_response('reduction/reduction_script.html', template_values,
context_instance=RequestContext(request))
def reduction_jobs(request, instrument_name):
"""
Return a list of the remote reduction jobs.
The jobs are those that are owned by the user and have an
entry in the database.
@param request: request object
"""
logger.debug("Reduction: %s instrument_name=%s"%(inspect.stack()[0][3],instrument_name))
instrument_name = str(instrument_name).lower()
jobs = RemoteJob.objects.filter(transaction__owner=request.user).filter(reduction__instrument__name=instrument_name )
status_data = []
for job in jobs:
if not job.transaction.is_active or job.reduction.get_config() is not None:
continue
j_data = {'remote_id': job.remote_id,
'id': job.pk,
'name': job.reduction.name,
'reduction_id': job.reduction.id,
'start_date': job.transaction.start_time,
'data': job.reduction.data_file,
'trans_id': job.transaction.trans_id,
'experiments': job.reduction.get_experiments()
}
status_data.append(j_data)
# Get config jobs
config_jobs = RemoteJobSet.objects.filter(transaction__owner=request.user).filter(configuration__instrument__name=instrument_name )
config_data = []
for job in config_jobs:
if not job.transaction.is_active:
continue
j_data = {'id': job.id,
'config_id': job.configuration.id,
'name': job.configuration.name,
'trans_id': job.transaction.trans_id,
'experiments': job.configuration.get_experiments()
}
config_data.append(j_data)
breadcrumbs = Breadcrumbs()
breadcrumbs.append_reduction(str.lower(str(instrument_name)))
breadcrumbs.append("jobs")
template_values = {'status_data': status_data,
'config_data': config_data,
'back_url': request.path,
'breadcrumbs': breadcrumbs,
'instrument' : instrument_name, }
template_values = reduction_server.view_util.fill_template_values(request, **template_values)
logger.debug(pprint.pformat(template_values))
return render_to_response('%s/reduction_jobs.html' % instrument_name,
template_values,
context_instance=RequestContext(request))
def reduction_submit(request, reduction_id, instrument_name):
"""
Submit a reduction script to Fermi.
@param request: request object
@param reduction_id: pk of the ReductionProcess object
"""
logger.debug("Reduction: %s instrument_name=%s"%(inspect.stack()[0][3],instrument_name))
instrument_name_lowercase = str.lower(str(instrument_name))
instrument_forms = view_util.import_module_from_app(instrument_name_lowercase,'forms')
# TODO: Make sure the submission errors are clearly reported
reduction_proc = get_object_or_404(ReductionProcess, pk=reduction_id, owner=request.user)
# Start a new transaction
transaction = remote.view_util.transaction(request, start=True)
if transaction is None:
breadcrumbs = Breadcrumbs()
breadcrumbs.append_reduction(instrument_name_lowercase)
breadcrumbs.append_reduction_options(instrument_name_lowercase, reduction_id)
messages.add_message(request, messages.ERROR, "Could not connect to Fermi and establish transaction.")
template_values = {'back_url': reverse('reduction_options',
kwargs={'reduction_id' : reduction_id, 'instrument_name': instrument_name_lowercase}),
'breadcrumbs': breadcrumbs, }
template_values = reduction_server.view_util.fill_template_values(request, **template_values)
logger.debug(pprint.pformat(template_values))
return render_to_response('remote/failed_connection.html', template_values,
context_instance=RequestContext(request))
data = instrument_forms.ReductionOptions.data_from_db(request.user, reduction_id)
code = instrument_forms.ReductionOptions.as_mantid_script(data, transaction.directory)
jobID = remote.view_util.submit_job(request, transaction, code)
if jobID is not None:
job = RemoteJob(reduction=reduction_proc,
remote_id=jobID,
properties=reduction_proc.properties,
transaction=transaction)
job.save()
logger.debug("Created a RemoteJob: %s",job)
messages.add_message(request, messages.SUCCESS,
message="Job %s sucessfully submitted. <a href='%s' class='message-link'>Click to see the results this job </a>."%
(job.id, reverse('reduction_query', kwargs={'remote_job_id' : job.id, 'instrument_name' : instrument_name_lowercase})))
return redirect(reverse('reduction_options',
kwargs={'reduction_id' : reduction_id,
'instrument_name': instrument_name_lowercase}))
def experiment(request, ipts, instrument_name):
"""
List of reductions and configurations for a given experiment
@param request: request object
@param ipts: experiment name
#TODO create new reduction using a pre-existing one as a template
"""
logger.debug("Reduction: %s instrument_name=%s"%(inspect.stack()[0][3],instrument_name))
instrument_name_capitals = str.capitalize(str(instrument_name))
instrument_name_lowercase = str.lower(str(instrument_name))
# Get experiment object
uncategorized = Experiment.objects.get_uncategorized(instrument_name)
try:
experiment_obj = Experiment.objects.get(name=ipts)
except:
experiment_obj = uncategorized
IS_UNCATEGORIZED = experiment_obj.is_uncategorized()
#RIC: Don't understand this one!
reduction_start_form = forms.ReductionStart(request.GET)
icat_ipts = {}
if not IS_UNCATEGORIZED:
icat_ipts = get_ipts_info(str.capitalize(str(instrument_name)), ipts)
# Get all the user's reductions
red_list = []
if 'run_number' in request.GET:
red_list = ReductionProcess.objects.filter(owner=request.user,
data_file__contains=request.GET['run_number'])
if len(red_list) == 0:
create_url = reverse('reduction_options',
kwargs={'instrument_name': instrument_name_lowercase})
create_url += '?reduction_name=Reduction for r%s' % request.GET['run_number']
create_url += '&expt_id=%d' % experiment_obj.id
create_url += '&data_file=%s' % request.GET['run_number']
return redirect(create_url)
else:
for item in ReductionProcess.objects.filter(owner=request.user,
experiments=experiment_obj).order_by('data_file'):
if not item in red_list:
red_list.append(item)
reductions = []
for r in red_list:
data_dict = r.get_data_dict()
data_dict['id'] = r.id
data_dict['config'] = r.get_config()
# For this reduction_process (r) check if there more more jobs, if so get the most recent!
latest_job = view_util.get_latest_job(request, r)
if latest_job is not None:
data_dict['completed_job'] = reverse('reduction_query',
kwargs={'remote_job_id' : latest_job.pk,
'instrument_name': instrument_name_lowercase })
try:
run_id = int(data_dict['data_file'])
data_dict['webmon_url'] = "https://monitor.sns.gov/report/%s/%s/" %(instrument_name,run_id)
except:
pass
reductions.append(data_dict)
# Get all user configurations
config_list = ReductionConfiguration.objects.filter(owner=request.user,
experiments=experiment_obj).order_by('name')
configurations = []
for item in config_list:
data_dict = item.get_data_dict()
data_dict['id'] = item.id
latest_jobs = RemoteJobSet.objects.filter(configuration=item)
if len(latest_jobs) > 0:
latest_job = latest_jobs.latest('id')
data_dict['latest_job'] = latest_job.id
# data_dict['latest_job'] = reverse('eqsans.views.configuration_query', args=[latest_job.id])
configurations.append(data_dict)
breadcrumbs = Breadcrumbs()
breadcrumbs.append_reduction(instrument_name_lowercase)
breadcrumbs.append(ipts.lower())
template_values = {'reductions': reductions,
'configurations': configurations,
'title': '%s %s' % (instrument_name_capitals, ipts),
'breadcrumbs': breadcrumbs,
'ipts_number': ipts,
'back_url': reverse('reduction_experiment', kwargs={'ipts' : ipts, 'instrument_name': instrument_name_lowercase }),
'icat_info': icat_ipts,
'form': reduction_start_form,
'is_categorized': not IS_UNCATEGORIZED,
'instrument' : instrument_name_lowercase, }
if 'icat_error' in icat_ipts:
template_values['user_alert'] = [icat_ipts['icat_error']]
template_values = reduction_server.view_util.fill_template_values(request, **template_values)
# logger.debug(pprint.pformat(configurations))
# logger.debug(pprint.pformat(reductions))
logger.debug(pprint.pformat(template_values))
return render_to_response('%s/experiment.html' % instrument_name_lowercase,
template_values,
context_instance=RequestContext(request))
def configuration_options(request, instrument_name, config_id=None):
"""
Show the reduction properties for a given configuration,
along with all the reduction jobs associated with it.
Called when clicked Reduce->Batch Button, or new configuration
@param request: The request object
@param config_id: The ReductionConfiguration pk
"""
logger.debug("configuration_options: %s"%inspect.stack()[0][3])
# logger.debug("************************** POST")
# l = request.POST.items()
# l.sort()
# logger.debug(pprint.pformat(l))
# logger.debug("************************** GET")
# l = request.GET.items()
# l.sort()
# logger.debug(pprint.pformat(l))
instrument_name_capitals = str(instrument_name).upper()
instrument_name_lowercase = str(instrument_name).lower()
instrument_forms = view_util.import_module_from_app(instrument_name_lowercase,'forms')
template_values = {}
forms_handler = instrument_forms.ConfigurationFormHandler(request,config_id)
# The list of relevant experiments will be displayed on the page
expt_list = None
job_list = None
# Deal with data submission
if request.method == 'POST':
if forms_handler.are_forms_valid():
config_id = forms_handler.save_forms()
if config_id is not None:
return redirect(reverse('configuration_options',
kwargs={'config_id' : config_id,
'instrument_name' : instrument_name_lowercase}))
else:
# Deal with the case of creating a new configuration
if config_id is not None:
reduction_config = get_object_or_404(ReductionConfiguration, pk=config_id, owner=request.user)
expt_list = reduction_config.experiments.all()
job_list = RemoteJobSet.objects.filter(configuration=reduction_config)
breadcrumbs = Breadcrumbs()
breadcrumbs.append_reduction(instrument_name_lowercase)
if config_id is not None:
breadcrumbs.append("configuration %s" % config_id)
else:
breadcrumbs.append("new configuration")
# ICAT info url
icat_url = reverse('catalog_run_info', args=[instrument_name_capitals, '0000'])
icat_url = icat_url.replace('/0000', '')
# TODO: add New an Save-As functionality
template_values.update({'config_id': config_id,
'expt_list': expt_list,
'existing_job_sets': job_list,
'title': '%s Reduction' % instrument_name_capitals,
'breadcrumbs': breadcrumbs,
'icat_url': icat_url,
'instrument' : instrument_name, })
template_values.update( forms_handler.get_forms())
template_values = reduction_server.view_util.fill_template_values(request, **template_values)
logger.debug(pprint.pformat(template_values))
return render_to_response('%s/configuration_options.html' % instrument_name_lowercase,
template_values, context_instance=RequestContext(request))
def reduction_options(request, reduction_id=None, instrument_name=None):
"""
Display the reduction options form:
If reduction_id exists, it will populate the form with information from that reduction.
@param request: request object
@param reduction_id: pk of reduction process object
"""
logger.debug("Reduction: %s instrument_name=%s"%(inspect.stack()[0][3],instrument_name))
instrument_name_capitals = str.capitalize(str(instrument_name))
instrument_name_lowercase = str.lower(str(instrument_name))
instrument_forms = view_util.import_module_from_app(instrument_name_lowercase,'forms')
template_values = {}
# Get reduction and configuration information
config_obj = None
if reduction_id is not None:
reduction_proc = get_object_or_404(ReductionProcess, pk=reduction_id, owner=request.user)
config_obj = reduction_proc.get_config()
if request.method == 'POST':
#logger.debug(pprint.pformat(request.POST.items()))
options_form = instrument_forms.ReductionOptions(request.POST)
# If the form is valid update or create an entry for it (if the data_file is different, a new entry is created!)
if options_form.is_valid():
new_reduction_id = options_form.to_db(request.user, reduction_id)
if new_reduction_id is not None:
messages.add_message(request, messages.SUCCESS, "Reduction parameters were sucessfully updated: " +
"old_reduction_id=%s :: new_reduction_id=%s"%(reduction_id,new_reduction_id) )
## Keep the new reduction attached to the same configuration of the old one!
# This is used for SEQ.
# TODO: Check if SANS guys want that!
if config_obj is not None:
reduction_proc = get_object_or_404(ReductionProcess, pk=new_reduction_id, owner=request.user)
config_obj.reductions.add(reduction_proc)
config_obj.save()
return redirect(reverse('reduction_options',
kwargs={'reduction_id' : new_reduction_id, 'instrument_name' : instrument_name}))
else:
messages.add_message(request, messages.ERROR, "The form is not valid. See errors above.")
else:
if reduction_id is not None:
initial_values = instrument_forms.ReductionOptions.data_from_db(request.user, reduction_id)
else:
initial_values = copy.deepcopy(request.GET)
if 'expt_name' in request.GET:
initial_values['experiment'] = request.GET['expt_name']
options_form = instrument_forms.ReductionOptions(initial=initial_values)
breadcrumbs = Breadcrumbs()
breadcrumbs.append_reduction(instrument_name_lowercase)
if config_obj is not None:
breadcrumbs.append_configuration(instrument_name_lowercase,config_obj.id)
template_values.update({"properties":config_obj.get_data_dict()});
if reduction_id is not None:
breadcrumbs.append("reduction %s" % reduction_id)
else:
breadcrumbs.append("new reduction")
# ICAT info url
icat_url = reverse('catalog_run_info', args=[instrument_name_capitals, '0000'])
icat_url = icat_url.replace('/0000', '')
# TODO: add New an Save-As functionality
template_values.update({'options_form': options_form,
'title': '%s Reduction' % instrument_name_capitals,
'breadcrumbs': breadcrumbs,
'reduction_id': reduction_id,
'icat_url': icat_url,
'instrument' : instrument_name_lowercase, })
# Get existing jobs for this reduction
if reduction_id is not None:
existing_jobs = RemoteJob.objects.filter(reduction=reduction_proc)
if len(existing_jobs) > 0:
template_values['existing_jobs'] = existing_jobs.order_by('id')
template_values['expt_list'] = reduction_proc.experiments.all()
template_values = reduction_server.view_util.fill_template_values(request, **template_values)
logger.debug(pprint.pformat(template_values))
return render_to_response('%s/reduction_options.html' % instrument_name_lowercase,
template_values,context_instance=RequestContext(request))
