def generate_reports(self, filename=None, label=None):
"""Generates the report files by calling the generate_report method
from Reports"""
if filename is None:
filename = tkFileDialog.askdirectory()
if label is None:
label = self.fluor_path.split("/")
label = label[len(label) - 1].split(".")
if len(label) > 2:
label = label[len(label) - 3] + "." + label[len(label) - 2]
else:
label = label[len(label) - 2]
if len(self.linescan_manager.lines.keys()) > 0:
self.linescan_manager.measure_fluorescence(
self.image_manager.fluor_image)
self.report_manager = ReportManager(self.parameters)
self.report_manager.generate_report(filename, label, self.cell_manager,
self.linescan_manager,
self.parameters)
if self.get_cell_images:
self.report_manager.get_cell_images(filename, label,
self.image_manager,
self.cell_manager,
self.parameters)
print "Reports Generated"
def run(self, args):
# First try to authenticate
if self.passboltServer.api.authenticate(
self.keyringManager.keyring,
self.configManager.user()['fingerprint'],
self.configManager.server()['fingerprint']):
resources = self.__fetchResources(args)
reportManager = ReportManager(self.configManager, args)
# Initialize a map that will contain the statistics of the renewal
renewalStats = {
'foundItems': 0,
'renewableItems': 0,
'items': {
'success': [], # Successfully renewed, no problem
'failures': [], # The service did not accept the renewal
'rollback':
[], # The password was renewed but not committed to passbolt, so it has been rollbacked
'errors': [
] # Everything failed, including the rollback of the password
}
}
# In the case where we are renewing resources that belong to a group, we will need
# to filter which resources are shared with edit rights, and which resources are not shared with
# this right
if not args.personal:
self.logger.info('Found [{}] resources available'.format(
len(resources)))
renewalStats['foundItems'] = len(resources)
resources = self.passboltServer.filterUpdatableResources(
resources)
self.logger.info('Found [{}] resources that can be renewed'.format(
len(resources)))
if args.limit != 0 and len(resources) >= args.limit:
self.logger.info(
'Limiting renewal to the first [{}] resources'.format(
args.limit))
resources = resources[:len(resources) - args.limit]
renewalStats['renewableItems'] = len(resources)
try:
for resource in resources:
self.__renewResource(resource, args, renewalStats)
except KeyboardInterrupt:
self.logger.info('Interrupted, sending report and exiting ...')
# At the end of the process, show and / or send a report
reportManager.sendReports(renewalStats)
else:
self.logger.error('Failed to authenticate to the Passbolt server.')
