def test_test_suites_prop(test_data_dir):
top_dir = test_data_dir / "ro-crate-galaxy-sortchangecase"
wf_path = top_dir / "sort-and-change-case.ga"
crate = ROCrate()
wf = crate.add(ComputationalWorkflow(crate, str(wf_path), wf_path.name))
crate.mainEntity = wf
suites = set()
assert not crate.test_suites
s1 = crate.add(TestSuite(crate, "s1"))
suites.add(s1)
crate.root_dataset["mentions"] = [s1]
assert suites == set(crate.test_suites)
s2 = crate.add(TestSuite(crate, "s2"))
crate.root_dataset["about"] = [s2]
suites.add(s2)
assert suites == set(crate.test_suites)
test_dir = crate.add_directory(dest_path="test")
assert crate.test_dir is test_dir
assert suites == set(crate.test_suites) # no "about" yet
s3 = crate.add(TestSuite(crate, "s3"))
suites.add(s3)
test_dir["about"] = [s3]
assert suites == set(crate.test_suites)
# check for duplicates
crate.root_dataset["about"] = [s1, s2]
assert sum(_ is s1 for _ in crate.test_suites) == 1
def test_add_test_suite(test_data_dir):
top_dir = test_data_dir / "ro-crate-galaxy-sortchangecase"
wf_path = top_dir / "sort-and-change-case.ga"
crate = ROCrate()
wf = crate.add(ComputationalWorkflow(crate, str(wf_path), wf_path.name))
crate.mainEntity = wf
suites = set()
assert not crate.test_suites
s1 = crate.add_test_suite()
assert s1["mainEntity"] is wf
suites.add(s1)
assert suites == set(crate.test_suites)
s2 = crate.add_test_suite(identifier="test1")
assert s2["mainEntity"] is wf
assert s2.id == "#test1"
suites.add(s2)
assert suites == set(crate.test_suites)
s3 = crate.add_test_suite(identifier="test2", name="Test 2")
assert s3["mainEntity"] is wf
assert s3.id == "#test2"
assert s3.name == "Test 2"
suites.add(s3)
assert suites == set(crate.test_suites)
wf2_path = top_dir / "README.md"
wf2 = crate.add(ComputationalWorkflow(crate, wf2_path, wf2_path.name))
s4 = crate.add_test_suite(identifier="test3", name="Foo", main_entity=wf2)
assert s4["mainEntity"] is wf2
assert s4.id == "#test3"
assert s4.name == "Foo"
suites.add(s4)
assert suites == set(crate.test_suites)
# check filtering in test_suites property
crate.root_dataset["mentions"] += [wf]
assert set(crate.root_dataset["mentions"]) > suites
assert suites == set(crate.test_suites)
def test_add_test_instance(test_data_dir):
top_dir = test_data_dir / "ro-crate-galaxy-sortchangecase"
wf_path = top_dir / "sort-and-change-case.ga"
crate = ROCrate()
wf = crate.add(ComputationalWorkflow(crate, str(wf_path), wf_path.name))
crate.mainEntity = wf
suite = crate.add_test_suite()
instances = set()
assert crate.dereference(JENKINS) is None
assert crate.dereference(TRAVIS) is None
i1 = crate.add_test_instance(suite, "http://example.com")
assert crate.dereference(JENKINS) is i1.service
assert crate.dereference(TRAVIS) is None
assert i1.url == "http://example.com"
instances.add(i1)
assert instances == set(suite.instance)
i2 = crate.add_test_instance(suite.id, "http://example.com")
assert i2.url == "http://example.com"
instances.add(i2)
assert instances == set(suite.instance)
i3 = crate.add_test_instance(suite, "http://example.com", resource="jobs")
assert i3.url == "http://example.com"
assert i3.resource == "jobs"
instances.add(i3)
assert instances == set(suite.instance)
i4 = crate.add_test_instance(suite, "http://example.com", service="travis")
assert i4.url == "http://example.com"
assert i4.service.id == TRAVIS
assert i4.service is crate.dereference(TRAVIS)
instances.add(i4)
assert instances == set(suite.instance)
i5 = crate.add_test_instance(suite,
"http://example.com",
identifier="test_1_1")
assert i5.url == "http://example.com"
assert i5.id == "#test_1_1"
instances.add(i5)
assert instances == set(suite.instance)
i6 = crate.add_test_instance(suite,
"http://example.com",
name="Test 1 Instance 1")
assert i6.url == "http://example.com"
assert i6.name == "Test 1 Instance 1"
instances.add(i6)
assert instances == set(suite.instance)
def test_add_test_definition(test_data_dir, engine, engine_version):
top_dir = test_data_dir / "ro-crate-galaxy-sortchangecase"
wf_path = top_dir / "sort-and-change-case.ga"
def_path = top_dir / "test" / "test1" / "sort-and-change-case-test.yml"
crate = ROCrate()
wf = crate.add(ComputationalWorkflow(crate, str(wf_path), wf_path.name))
crate.mainEntity = wf
suite = crate.add_test_suite()
assert crate.dereference(PLANEMO) is None
kwargs = {"source": def_path}
if engine:
kwargs["engine"] = engine
if engine_version:
kwargs["engine_version"] = engine_version
d = crate.add_test_definition(suite, **kwargs)
assert crate.dereference(PLANEMO) is d.engine
if engine_version:
assert d.engineVersion == engine_version
