import sys
sys.path.append('/Users/dsoto/current/swDataFlat/code')
import roxanne as rx
dataFile = open('../data/separated/039-converted.data','r')
rx.getHeader(dataFile)
data = rx.readDataFileArray(dataFile)
position = data['positionLateralMicron']
force = data['forceLateralMicroNewton']
position = map(float,position)
force = map(float,force)
import matplotlib.pyplot as plt
plt.plot(position,force)
plt.title('039 - SWS 12 Shear Bending')
plt.xlabel('Position (microns)')
plt.ylabel('Force (microNewtons)')
plt.grid()
plt.show()
plt.savefig('039-shearBending.pdf')
def main():
import sys
sys.path.append('/Users/dsoto/current/swDataFlat/roxanne')
import roxanne
import glob
import os.path
import numpy
parseFileIn = open('../037-sps06-ls/data/parsed.dat',
'r')
parseDict = roxanne.readDataFileArray(parseFileIn)
#print parseDict.keys()
fOut = open('analyzed.data','w')
fileNameList = glob.glob('../037-sps06-ls/data/separated/*.data')
outputList = ['fileName',
'pulloffAngle',
'forceMaxAdhesion',
'forceMaxShear',
'forcePreload']
# removed angle pulloff from output list
sep = '\t'
headerString = sep.join(outputList)
fOut.write(headerString)
fOut.write('\n')
for dataFileName in fileNameList:
print 'processing file : ' + dataFileName
# read in data file
fileIn = open(dataFileName)
headerDict = roxanne.getHeader(fileIn)
dataDict = roxanne.readDataFileArray(fileIn)
# this dataDict needs to be converted to floats
for key in dataDict.keys():
dataDict[key] = map(float, dataDict[key])
# angle value should be in headerDict
pulloffAngle = float(headerDict['pulloffAngle'])
# get indices from the parsed.data file
# get location of filename in parseDict
# and pull data from same index in the other arrays
parsedFileNames = parseDict['dataFileName']
dataFileNameNoPath = os.path.split(dataFileName)[1]
#fileNameNoPath = fileNames
indexFileName = parsedFileNames.index(dataFileNameNoPath)
indexContact = parseDict['indexContact'][indexFileName]
indexPreload = parseDict['indexMaxPreload'][indexFileName]
indexMaxAdhesion = parseDict['indexMaxAdhesion'][indexFileName]
indexContact = int(indexContact)
indexPreload = int(indexPreload)
indexMaxAdhesion = int(indexMaxAdhesion)
# pull force values at those indices
# data will be in dataDict
normalForceContactMuN = dataDict['forceNormalMicroNewton'][indexContact]
normalForcePreloadMuN = dataDict['forceNormalMicroNewton'][indexPreload]
normalForcePulloffMuN = dataDict['forceNormalMicroNewton'][indexMaxAdhesion]
shearForceContactMuN = dataDict['forceLateralMicroNewton'][indexContact]
shearForcePreloadMuN = dataDict['forceLateralMicroNewton'][indexPreload]
shearForcePulloffMuN = dataDict['forceLateralMicroNewton'][indexMaxAdhesion]
# correct for force at contact
# adhesion force = maxAdhesion - force at contact
maxAdhesionMuN = (normalForcePulloffMuN -
normalForceContactMuN)
# shear force = maxShear - force at contact
maxShearMuN = (shearForcePulloffMuN -
shearForceContactMuN)
# force at preload - force at contact = force of preload
forcePreload = normalForcePreloadMuN - normalForceContactMuN
fOut.write(dataFileNameNoPath + '\t')
fOut.write('% 5.1f\t' % pulloffAngle )
fOut.write('% 5.3f\t' % maxAdhesionMuN)
fOut.write('% 5.3f\t' % maxShearMuN)
fOut.write('% 5.3f\t' % forcePreload)
fOut.write('\n')
fOut.close()