def runMapper(self, dataSource, transform):
'''
Run the selected mapper
'''
self.dataSource = dataSource
nx = int(self.xDimTxt.text())
ny = int(self.yDimTxt.text())
nz = int(self.zDimTxt.text())
if self.outputFileName == "":
self.outputFileName = os.path.join(dataSource.projectDir, \
"%s.vti" %dataSource.projectName)
self.emit(qtCore.SIGNAL(SET_FILE_NAME_SIGNAL), self.outputFileName)
if os.access(os.path.dirname(self.outputFileName), os.W_OK):
self.mapper = QGridMapper(dataSource, \
self.outputFileName, \
nx=nx, ny=ny, nz=nz,
transform = transform,
appConfig=self.appConfig)
self.mapper.setProgressUpdater(self.updateProgress)
self.mapper.doMap()
else:
self.emit(qtCore.SIGNAL(PROCESS_ERROR_SIGNAL), \
"The specified directory \n" + \
str(os.path.dirname(self.outputFileName)) + \
"\nis not writable")
def runMapper(self, dataSource, transform):
'''
Run the selected mapper. Writer specific class should be specified
in the application specific subclass. A list of forms is provided in
dataSource classes.
'''
logger.debug ("Entering " + self.FORM_TITLE + " " + \
str(self.gridWriter))
self.dataSource = dataSource
nx = int(self.xDimTxt.text())
ny = int(self.yDimTxt.text())
nz = int(self.zDimTxt.text())
self.outputFileName = self.getOutputFileName()
if self.outputFileName == "":
self.outputFileName = os.path.join(dataSource.projectDir, \
"%s%s" %(dataSource.projectName,self.gridWriter.FILE_EXTENSION) )
self.setFileName.emit(self.outputFileName)
if os.access(os.path.dirname(self.outputFileName), os.W_OK):
self.mapper = QGridMapper(dataSource, \
self.outputFileName, \
self.outputType,\
nx=nx, ny=ny, nz=nz,
transform = transform,
gridWriter = self.gridWriter,
appConfig=self.appConfig)
self.mapper.setProgressUpdater(self._updateProgress)
self.mapper.doMap()
else:
self.processError.emit("The specified directory \n" + \
str(os.path.dirname(self.outputFileName)) + \
"\nis not writable")
logger.debug("Exit " + self.FORM_TITLE)
def runMapper(self, dataSource, transform, gridWriter=None):
'''
Run the selected mapper
'''
logger.debug(METHOD_ENTER_STR)
self.dataSource = dataSource
nx = int(self.xDimTxt.text())
ny = int(self.yDimTxt.text())
nz = int(self.zDimTxt.text())
logger.debug( "nx,ny,nz %d,%d,%d" % (nx, ny, nz))
outType = self.outputType
if self.outputFileName == "":
self.outputFileName = os.path.join(dataSource.projectDir, \
"%s.vti" %dataSource.projectName)
self.setFileName[str].emit(self.outputFileName)
if os.access(os.path.dirname(self.outputFileName), os.W_OK):
self.mapper = QGridMapper(dataSource, \
self.outputFileName, \
outType, \
nx=nx, ny=ny, nz=nz, \
transform = transform, \
gridWriter = gridWriter,
appConfig=self.appConfig)
self.mapper.setGridWriter(VTIGridWriter())
self.mapper.setProgressUpdater(self._updateProgress)
self.mapper.doMap()
else:
self.processError.emit("The specified directory \n" + \
str(os.path.dirname(self.outputFileName)) + \
"\nis not writable")
logger.debug(METHOD_EXIT_STR)
class AbstractGridOutputForm(AbstractOutputView):
'''
A mid level abstract class for output of grid data. This adds inputs for the output grid
dimensions. Subclasses will need to add to _createDataBox in order to provide application
level inputs
'''
FORM_TITLE = "AbstractOutputForm"
def __init__(self, **kwargs):
'''
Constructor
'''
super(AbstractGridOutputForm, self).__init__(**kwargs)
self.gridWriter = VTIGridWriter()
self.outputFileName = ""
def _createDataBox(self):
'''
Create Widgets to collect output info. This class adds parameters for the size of
the output grid. Subclasses will override this method (Super'ing the method) to add
application specific inputs.
'''
dataBox = super(AbstractGridOutputForm, self)._createDataBox()
layout = dataBox.layout()
row = layout.rowCount()
row += 1
self._createGridDimensionInput(layout, row)
return dataBox
def _createGridDimensionInput(self, layout, row):
'''
provide parameters for output grid size
'''
label = qtGui.QLabel("Grid Dimensions")
layout.addWidget(label, row, 0)
row += 1
label = qtGui.QLabel(X_STR)
layout.addWidget(label, row, 0)
self.xDimTxt = qtGui.QLineEdit()
self.xDimTxt.setText(str(INITIAL_DIM))
self.xDimValidator = qtGui.QIntValidator()
self.xDimTxt.setValidator(self.xDimValidator)
layout.addWidget(self.xDimTxt, row, 1)
row += 1
label = qtGui.QLabel(Y_STR)
layout.addWidget(label, row, 0)
self.yDimTxt = qtGui.QLineEdit()
self.yDimTxt.setText(str(INITIAL_DIM))
self.yDimValidator = qtGui.QIntValidator()
self.yDimTxt.setValidator(self.yDimValidator)
layout.addWidget(self.yDimTxt, row, 1)
row += 1
label = qtGui.QLabel(Z_STR)
layout.addWidget(label, row, 0)
self.zDimTxt = qtGui.QLineEdit()
self.zDimTxt.setText(str(INITIAL_DIM))
self.zDimValidator = qtGui.QIntValidator()
self.zDimTxt.setValidator(self.zDimValidator)
layout.addWidget(self.zDimTxt, row, 1)
def getOutputFileName(self):
'''
dummy method to return self.outputFileName. This is used by runMapper to
supply a filename for output files. If the Writer used needs a fileName,
then the the derived class should supply self.outputFileName before running
the mapper. Otherwise a filename will be constructed using the project name
and gridWriter supplied extension.
'''
return self.outputFileName
def runMapper(self, dataSource, transform):
'''
Run the selected mapper. Writer specific class should be specified
in the application specific subclass. A list of forms is provided in
dataSource classes.
'''
logger.debug ("Entering " + self.FORM_TITLE + " " + \
str(self.gridWriter))
self.dataSource = dataSource
nx = int(self.xDimTxt.text())
ny = int(self.yDimTxt.text())
nz = int(self.zDimTxt.text())
self.outputFileName = self.getOutputFileName()
if self.outputFileName == "":
self.outputFileName = os.path.join(dataSource.projectDir, \
"%s%s" %(dataSource.projectName,self.gridWriter.FILE_EXTENSION) )
self.setFileName.emit(self.outputFileName)
if os.access(os.path.dirname(self.outputFileName), os.W_OK):
self.mapper = QGridMapper(dataSource, \
self.outputFileName, \
self.outputType,\
nx=nx, ny=ny, nz=nz,
transform = transform,
gridWriter = self.gridWriter,
appConfig=self.appConfig)
self.mapper.setProgressUpdater(self._updateProgress)
self.mapper.doMap()
else:
self.processError.emit("The specified directory \n" + \
str(os.path.dirname(self.outputFileName)) + \
"\nis not writable")
logger.debug("Exit " + self.FORM_TITLE)
def stopMapper(self):
'''
Halt the mapping _process
'''
self.mapper.stopMap()
ds.setRangeBounds(ds.getOverallRanges())
imageToBeUsed = ds.getImageToBeUsed()
print("imageToBeUsed %s" % imageToBeUsed)
# wavelen = ENERGY_WAVELENGTH_CONVERT_FACTOR/ds.getIncidentEnergy()[scans[0]]
imageSize = np.prod(ds.getDetectorDimensions())
print scanRange[0]
for imageInScan in range(1, len(imageToBeUsed[scanRange[0]])+1):
print ("Scan Line %d" % imageInScan)
outputFileName = os.path.join(projectDir, specName + \
('_N%d.vti' % imageInScan))
gridWriter = VTIGridWriter()
tmpImageUsed = imageToBeUsed[scanRange[0]]
savImageUsed = imageToBeUsed[scanRange[0]]
tmpImageUsed[imageInScan] = False
ds.imageToBeUsed[scanRange[0]] = [not i for i in tmpImageUsed]
gridMapper = QGridMapper(ds,
outputFileName,
outputType=BINARY_OUTPUT,
transform=UnityTransform3D(),
gridWriter=gridWriter,
appConfig=appConfig,
nx=nx, ny=ny, nz=nz)
gridMapper.setProgressUpdater(updateMapperProgress)
gridMapper.doMap()
ds.imageToBeUsed[scanRange[0]] = savImageUsed
class ProcessScans(qtGui.QDialog):
'''
This class presents a form to select to start analysis. This display
allows switching between Grid map and pole figure.
'''
def __init__(self, parent=None):
'''
Constructor - Layout widgets on the page & link up actions.
'''
super(ProcessScans, self).__init__(parent)
self.Mapper = None
layout = qtGui.QVBoxLayout()
self.dataBox = self._createDataBox()
controlBox = self._createControlBox()
layout.addWidget(self.dataBox)
layout.addWidget(controlBox)
self.setLayout(layout)
def _browseForOutputFile(self):
'''
Launch file browser to select the output file. Checks are done to make
sure the selected directory exists and that the selected file is
writable
'''
if self.outFileTxt.text() == "":
fileName = str(qtGui.QFileDialog.getSaveFileName(None, \
SAVE_FILE_STR, \
filter=VTI_FILTER_STR))
else:
inFileName = str(self.outFileTxt.text())
fileName = str(qtGui.QFileDialog.getSaveFileName(None,
SAVE_FILE_STR,
filter=VTI_FILTER_STR, \
directory = inFileName))
if fileName != "":
if os.path.exists(os.path.dirname(str(fileName))):
self.outFileTxt.setText(fileName)
self.outputFileName = fileName
self.outFileTxt.emit(qtCore.SIGNAL(EDIT_FINISHED_SIGNAL))
else:
message = qtGui.QMessageBox()
message.warning(self, \
WARNING_STR, \
"The specified directory does not exist")
self.outFileTxt.setText(fileName)
self.outputFileName = fileName
self.outFileTxt.emit(qtCore.SIGNAL(EDIT_FINISHED_SIGNAL))
if not os.access(os.path.dirname(fileName), os.W_OK):
message = qtGui.QMessageBox()
message.warning(self, \
WARNING_STR, \
"The specified file is not writable")
def _cancelProcess(self):
'''
Emit a signal to trigger the cancellation of processing.
'''
self.emit(qtCore.SIGNAL(CANCEL_PROCESS_SIGNAL))
def _createControlBox(self):
'''
Create box wih the GUI controls Run & Cancel
'''
controlBox = qtGui.QGroupBox()
controlLayout = qtGui.QGridLayout()
row = 0
self.progressBar = qtGui.QProgressBar()
controlLayout.addWidget(self.progressBar, row, 1)
self.runButton = qtGui.QPushButton(RUN_STR)
controlLayout.addWidget(self.runButton, row, 3)
self.cancelButton = qtGui.QPushButton(CANCEL_STR)
self.cancelButton.setDisabled(True)
controlLayout.addWidget(self.cancelButton, row, 4)
self.connect(self.runButton, \
qtCore.SIGNAL(CLICKED_SIGNAL), \
self._process)
self.connect(self.cancelButton, \
qtCore.SIGNAL(CLICKED_SIGNAL), \
self._cancelProcess)
self.connect(self, \
qtCore.SIGNAL(UPDATE_PROGRESS_SIGNAL), \
self.setProgress)
controlBox.setLayout(controlLayout)
return controlBox
def _createDataBox(self):
'''
Create Sub Layout for data gathering widgets
'''
dataBox = qtGui.QGroupBox()
dataLayout = qtGui.QGridLayout()
row = 0
label = qtGui.QLabel("Grid Dimensions")
dataLayout.addWidget(label, row, 0)
row += 1
label = qtGui.QLabel(X_STR)
dataLayout.addWidget(label, row, 0)
self.xDimTxt = qtGui.QLineEdit()
self.xDimTxt.setText("200")
self.xDimValidator = qtGui.QIntValidator()
self.xDimTxt.setValidator(self.xDimValidator)
dataLayout.addWidget(self.xDimTxt, row, 1)
row += 1
label = qtGui.QLabel(Y_STR)
dataLayout.addWidget(label, row, 0)
self.yDimTxt = qtGui.QLineEdit()
self.yDimTxt.setText("200")
self.yDimValidator = qtGui.QIntValidator()
self.yDimTxt.setValidator(self.yDimValidator)
dataLayout.addWidget(self.yDimTxt, row, 1)
row += 1
label = qtGui.QLabel(Z_STR)
dataLayout.addWidget(label, row, 0)
self.zDimTxt = qtGui.QLineEdit()
self.zDimTxt.setText("200")
self.zDimValidator = qtGui.QIntValidator()
self.zDimTxt.setValidator(self.zDimValidator)
dataLayout.addWidget(self.zDimTxt, row, 1)
row += 1
label = qtGui.QLabel("Output File")
dataLayout.addWidget(label, row, 0)
self.outputFileName = ""
self.outFileTxt = qtGui.QLineEdit()
self.outFileTxt.setText(self.outputFileName)
dataLayout.addWidget(self.outFileTxt, row, 1)
self.outputFileButton = qtGui.QPushButton(BROWSE_STR)
dataLayout.addWidget(self.outputFileButton, row, 2)
self.connect(self.outputFileButton, \
qtCore.SIGNAL(CLICKED_SIGNAL),
self._browseForOutputFile)
self.connect(self.outputFileButton, \
qtCore.SIGNAL(EDIT_FINISHED_SIGNAL),
self._editFinishedOutputFile)
self.connect(self.outFileTxt, \
qtCore.SIGNAL(EDIT_FINISHED_SIGNAL), \
self._editFinishedOutputFile)
self.connect(self, qtCore.SIGNAL(SET_FILE_NAME_SIGNAL),
self.outFileTxt.setText)
dataBox.setLayout(dataLayout)
return dataBox
def _editFinishedOutputFile(self):
'''
When editing is finished the a check is done to make sure that the
directory exists and the file is writable
'''
fileName = str(self.outFileTxt.text())
if fileName != "":
if os.path.exists(os.path.dirname(fileName)):
self.outputFileName = fileName
else:
if os.path.dirname(fileName) == "":
curDir = os.path.realpath(os.path.curdir)
fileName = str(os.path.join(curDir, fileName))
else:
message = qtGui.QMessageBox()
message.warning(self, \
WARNING_STR, \
"The specified directory \n" + \
str(os.path.dirname(fileName)) + \
"\ndoes not exist")
# self.outputFileName = fileName
self.emit(qtCore.SIGNAL(SET_FILE_NAME_SIGNAL), fileName)
if not os.access(os.path.dirname(fileName), os.W_OK):
message = qtGui.QMessageBox()
message.warning(self, \
WARNING_STR, \
"The specified file is not writable")
def _process(self):
'''
Emit a signal to trigger the start of processing.
'''
self.emit(qtCore.SIGNAL(PROCESS_SIGNAL))
def runMapper(self, dataSource, transform):
'''
Run the selected mapper
'''
self.dataSource = dataSource
nx = int(self.xDimTxt.text())
ny = int(self.yDimTxt.text())
nz = int(self.zDimTxt.text())
if self.outputFileName == "":
self.outputFileName = os.path.join(dataSource.projectDir, \
"%s.vti" %dataSource.projectName)
self.emit(qtCore.SIGNAL(SET_FILE_NAME_SIGNAL), self.outputFileName)
if os.access(os.path.dirname(self.outputFileName), os.W_OK):
self.mapper = QGridMapper(dataSource, \
self.outputFileName, \
nx=nx, ny=ny, nz=nz,
transform = transform,
appConfig=self.appConfig)
self.mapper.setProgressUpdater(self.updateProgress)
self.mapper.doMap()
else:
self.emit(qtCore.SIGNAL(PROCESS_ERROR_SIGNAL), \
"The specified directory \n" + \
str(os.path.dirname(self.outputFileName)) + \
"\nis not writable")
def setCancelOK(self):
'''
If Cancel is OK the run button is disabled and the cancel button is
enabled
'''
self.runButton.setDisabled(True)
self.cancelButton.setDisabled(False)
self.dataBox.setDisabled(True)
def setOutFileName(self, name):
'''
Write a filename to the text widget and to the stored output file name
:param name: Name of output file
'''
self.outFileTxt.setText(name)
self.outputFileName = name
def setProgress(self, value):
'''
Set the value in the progress bar
:param value: value to write to the progress bar
'''
self.progressBar.setValue(value)
def setProgressLimits(self, progressMin, progressMax):
'''
Set the limits on the progress bar.
:param progressMin: Minimum value to store in the progress bar
:param progressMax: Maximum value to store in the progress bar
'''
self.progressBar.setMinimum(progressMin)
self.progressBar.setMaximum(progressMax)
def setRunOK(self):
'''
If Run is OK the load button is enabled and the cancel button is
disabled
'''
self.runButton.setDisabled(False)
self.cancelButton.setDisabled(True)
self.dataBox.setDisabled(False)
def _stopMapper(self):
'''
Halt the mapping _process
'''
self.mapper.stopMap()
def updateProgress(self, value):
'''
Send signal to update the progress bar.
:param value: value to be put on the progress bar.
'''
self.emit(qtCore.SIGNAL(UPDATE_PROGRESS_SIGNAL), value)
class ProcessVTIOutputForm(AbstractOutputView):
FORM_TITLE = "VTI Grid Output"
@staticmethod
def createInstance(parent=None, appConfig=None):
return ProcessVTIOutputForm(parent=parent, appConfig=appConfig)
def __init__(self, **kwargs):
super(ProcessVTIOutputForm, self).__init__(**kwargs)
logger.debug(METHOD_ENTER_STR)
self.mapper = None
layout = qtGui.QVBoxLayout()
self.dataBox = self._createDataBox()
controlBox = self._createControlBox()
layout.addWidget(self.dataBox)
layout.addWidget(controlBox)
self.setLayout(layout)
self.outputType = BINARY_OUTPUT
logger.debug(METHOD_EXIT_STR)
@Slot()
def _browseForOutputFile(self):
'''
Launch file browser to select the output file. Checks are done to make
sure the selected directory exists and that the selected file is
writable
'''
logger.debug(METHOD_ENTER_STR)
if self.outFileTxt.text() == EMPTY_STR:
fileName = str(qtGui.QFileDialog.getSaveFileName(None, \
SAVE_FILE_STR, \
filter=VTI_FILTER_STR))
else:
inFileName = str(self.outFileTxt.text())
fileName = str(qtGui.QFileDialog.getSaveFileName(None,
SAVE_FILE_STR,
filter=VTI_FILTER_STR, \
directory = inFileName))
if fileName != EMPTY_STR:
if os.path.exists(os.path.dirname(str(fileName))):
self.outFileTxt.setText(fileName)
self.outputFileName = fileName
self.outFileTxt.editingFinished.emit()
else:
message = qtGui.QMessageBox()
message.warning(self, \
WARNING_STR, \
"The specified directory does not exist")
self.outFileTxt.setText(fileName)
self.outputFileName = fileName
self.outFileTxt.editingFinished.emit()
if not os.access(os.path.dirname(fileName), os.W_OK):
message = qtGui.QMessageBox()
message.warning(self, \
WARNING_STR, \
"The specified file is not writable")
else:
self.outputFileName = EMPTY_STR
self.setOutFileText.emit(EMPTY_STR)
logger.debug(METHOD_EXIT_STR)
# @Slot()
# def _cancelProcess(self):
# '''
# Emit a signal to trigger the cancellation of processing.
# '''
# self.cancel.emit(qtCore.SIGNAL(CANCEL_PROCESS_SIGNAL))
def _createDataBox(self):
'''
Create Widgets to collect output info
'''
logger.debug(METHOD_ENTER_STR)
dataBox = super(ProcessVTIOutputForm, self)._createDataBox()
dataLayout = dataBox.layout()
row = dataLayout.rowCount()
label = qtGui.QLabel("Grid Dimensions")
dataLayout.addWidget(label, row,0)
row += 1
label = qtGui.QLabel(X_STR)
dataLayout.addWidget(label, row,0)
self.xDimTxt = qtGui.QLineEdit()
self.xDimTxt.setText("200")
self.xDimValidator = qtGui.QIntValidator()
self.xDimTxt.setValidator(self.xDimValidator)
dataLayout.addWidget(self.xDimTxt, row,1)
row += 1
label = qtGui.QLabel(Y_STR)
dataLayout.addWidget(label, row,0)
self.yDimTxt = qtGui.QLineEdit()
self.yDimTxt.setText("200")
self.yDimValidator = qtGui.QIntValidator()
self.yDimTxt.setValidator(self.yDimValidator)
dataLayout.addWidget(self.yDimTxt, row,1)
row += 1
label = qtGui.QLabel(Z_STR)
dataLayout.addWidget(label, row,0)
self.zDimTxt = qtGui.QLineEdit()
self.zDimTxt.setText("200")
self.zDimValidator = qtGui.QIntValidator()
self.zDimTxt.setValidator(self.zDimValidator)
dataLayout.addWidget(self.zDimTxt, row,1)
row += 1
label = qtGui.QLabel("Output File")
dataLayout.addWidget(label, row,0)
self.outputFileName = ""
self.outFileTxt = qtGui.QLineEdit()
self.outFileTxt.setText(self.outputFileName)
dataLayout.addWidget(self.outFileTxt, row,1)
self.outputFileButton = qtGui.QPushButton(BROWSE_STR)
dataLayout.addWidget(self.outputFileButton, row, 2)
row += 1
label = qtGui.QLabel("Output Type")
dataLayout.addWidget(label, row, 0)
self.outputTypeSelect = QComboBox()
self.outputTypeSelect.addItem(BINARY_OUTPUT)
self.outputTypeSelect.addItem(ASCII_OUTPUT)
dataLayout.addWidget(self.outputTypeSelect, row, 2)
self.outputFileButton.clicked.connect(self._browseForOutputFile)
# self.connect(self.outputFileButton, \
# qtCore.SIGNAL(EDIT_FINISHED_SIGNAL),
# self._editFinishedOutputFile)
self.outFileTxt.editingFinished.connect(self._editFinishedOutputFile)
self.setFileName[str].connect( self.setOutFileText)
self.outputTypeSelect.currentIndexChanged[str]. \
connect(self._selectedTypeChanged)
logger.debug(METHOD_EXIT_STR)
return dataBox
@Slot()
def _editFinishedOutputFile(self):
'''
When editing is finished the a check is done to make sure that the
directory exists and the file is writable
'''
logger.debug(METHOD_ENTER_STR)
fileName = str(self.outFileTxt.text())
if fileName != EMPTY_STR:
if os.path.exists(os.path.dirname(fileName)):
self.outputFileName = fileName
else:
if os.path.dirname(fileName) == EMPTY_STR:
curDir = os.path.realpath(os.path.curdir)
fileName = str(os.path.join(curDir, fileName))
else:
message = qtGui.QMessageBox()
message.warning(self, \
WARNING_STR, \
"The specified directory \n" + \
str(os.path.dirname(fileName)) + \
"\ndoes not exist")
# self.outputFileName = fileName
self.setFileName.emit(fileName)
if not os.access(os.path.dirname(fileName), os.W_OK):
message = qtGui.QMessageBox()
message.warning(self, \
WARNING_STR, \
"The specified file is not writable")
else:
self.outputFileName = EMPTY_STR
self.setOutFileText.emit(EMPTY_STR)
logger.debug(METHOD_EXIT_STR)
# @Slot()
# def _process(self):
# '''
# Emit a signal to trigger the start of processing.
# '''
# self.emit(qtCore.SIGNAL(PROCESS_SIGNAL))
def runMapper(self, dataSource, transform, gridWriter=None):
'''
Run the selected mapper
'''
logger.debug(METHOD_ENTER_STR)
self.dataSource = dataSource
nx = int(self.xDimTxt.text())
ny = int(self.yDimTxt.text())
nz = int(self.zDimTxt.text())
logger.debug( "nx,ny,nz %d,%d,%d" % (nx, ny, nz))
outType = self.outputType
if self.outputFileName == "":
self.outputFileName = os.path.join(dataSource.projectDir, \
"%s.vti" %dataSource.projectName)
self.setFileName[str].emit(self.outputFileName)
if os.access(os.path.dirname(self.outputFileName), os.W_OK):
self.mapper = QGridMapper(dataSource, \
self.outputFileName, \
outType, \
nx=nx, ny=ny, nz=nz, \
transform = transform, \
gridWriter = gridWriter,
appConfig=self.appConfig)
self.mapper.setGridWriter(VTIGridWriter())
self.mapper.setProgressUpdater(self._updateProgress)
self.mapper.doMap()
else:
self.processError.emit("The specified directory \n" + \
str(os.path.dirname(self.outputFileName)) + \
"\nis not writable")
logger.debug(METHOD_EXIT_STR)
@Slot(str)
def _selectedTypeChanged(self, typeStr):
logger.debug(METHOD_ENTER_STR)
self.outputType = str(typeStr)
logger.debug(METHOD_EXIT_STR)
@Slot(str)
def setOutFileText(self, outFile):
logger.debug(METHOD_ENTER_STR)
self.outFileTxt.setText(outFile)
self.outFileTxt.editingFinished.emit()
def _stopMapper(self):
'''
Halt the mapping _process
'''
logger.debug(METHOD_ENTER_STR)
self.mapper.stopMap()
logger.debug(METHOD_EXIT_STR)
maxImageMemory = appConfig.getMaxImageMemory()
for scans in scanList1:
scanRange = srange(scans).list()
print ("scanRange %s" % scanRange)
print("specName, specExt: %s, %s" % (specName, specExt))
ds = Sector33SpecDataSource(projectDir, specName, specExt,
instConfigName, detectorConfigName, roi=roi,
pixelsToAverage=bin, scanList= scanRange,
badPixelFile=badPixelFile,
appConfig=appConfig)
ds.setCurrentDetector(detectorName)
ds.setProgressUpdater(updateDataSourceProgress)
ds.loadSource(mapHKL=mapHKL)
ds.setRangeBounds(ds.getOverallRanges())
imageToBeUsed = ds.getImageToBeUsed()
print("imageToBeUsed %s" % imageToBeUsed)
# wavelen = ENERGY_WAVELENGTH_CONVERT_FACTOR/ds.getIncidentEnergy()[scans[0]]
imageSize = np.prod(ds.getDetectorDimensions())
gridMapper = QGridMapper(ds,
outputFileName,
outputType=BINARY_OUTPUT,
transform=UnityTransform3D(),
gridWriter=VTIGridWriter(),
appConfig=appConfig)
gridMapper.setProgressUpdater(updateMapperProgress)
gridMapper.doMap()
print ' Q : ', coords_x_min, ' .... ', coords_x_max
print 'Resulting data set:'
print ' x_min: ', x_min
print ' x_max: ', x_max
print ' x_step: ', x_step
print ' nbins: ', nbins
print ''
print 'Starting the gridding process'
# Create a gridder object and initialize
gridder = xu.Gridder1D(int(nbins))
gridder.KeepData(True)
gridder.dataRange(x_min, x_max)
# Create the QGridMapper object
gm = QGridMapper(ds, 'dummy.vti')
# Run through all scans of the scan-set to perform the gridding
for scan in ds.getAvailableScans():
if verbose:
print "Scan number: ", scan
numImages = len(imageToBeUsed[scan])
if imageSize * 4 * numImages <= max_image_memory:
if verbose:
print " Only 1 pass required."
qx, qy, qz, intensity = ds.rawmap((scan, ),
mask=imageToBeUsed[scan])
Q = np.sqrt(qx**2 + qy**2 + qz**2)
if data_coordinate is 'tth':
coords_x = np.rad2deg(
np.arcsin((Q * wavelen) / (4.0 * np.pi)) * 2.0)