def test_import_tree_into_subfolder(self):
folder = self.api.create_folder("tree-root")
tree_dir = get_datafile("tree")
res = self.api.import_tree(tree_dir, parent_folder_id=folder["id"])
self.assertEqual("OK", res["status"])
## f, 2sf, and 3files in each sf
self.assertEqual(9, len(res["path2Id"].keys()))
def test_import_tree_summary_doc_only(self):
tree_dir = get_datafile("tree")
res = self.api.import_tree(
tree_dir, doc_creation=DocumentCreationStrategy.SUMMARY_DOC)
self.assertEqual("OK", res["status"])
## original folder + summary doc
self.assertEqual(2, len(res["path2Id"].keys()))
def test_import_tree_summary_doc_per_subfolder(self):
tree_dir = get_datafile("tree")
res = self.api.import_tree(
tree_dir, doc_creation=DocumentCreationStrategy.DOC_PER_SUBFOLDER)
self.assertEqual("OK", res["status"])
## original folder + 2 sf + 2 summary docs
self.assertEqual(5, len(res["path2Id"].keys()))
def test_upload_downloadfile(self):
file = get_datafile("fish_method.doc")
try:
with open(file, "rb") as to_upload:
rs_file = self.api.upload_file(to_upload)
rs_get = self.api.download_file(rs_file["id"], "out.doc")
finally:
os.remove(os.path.join(os.getcwd(), "out.doc"))
def test_post_retrieve_sample_template_icon(self):
t_json = (template_builder.TemplateBuilder("WithIcon",
"ml").text("Notes").number(
"pH", 7).build())
st = self.invapi.create_sample_template(t_json)
icon_file = base.get_datafile("antibodySample150.png")
with open(icon_file, "rb") as icon:
updated_template = self.invapi.set_sample_template_icon(
st["id"], icon)
self.assertTrue(updated_template["iconId"] > 0)
outfile = "downloaded.png"
try:
self.invapi.get_sample_template_icon(st["id"],
updated_template["iconId"],
outfile)
self.assertEqual(1600, os.path.getsize(outfile))
finally:
os.remove(os.path.join(os.getcwd(), outfile))
def test_import_tree_include_dot_files(self):
tree_dir = get_datafile("tree")
res = self.api.import_tree(tree_dir, ignore_hidden_folders=False)
self.assertEqual("OK", res["status"])
## f, 2sf, and 3files in each sf + hidden
self.assertTrue(len(res["path2Id"].keys()) > 10)
def test_import_tree(self):
tree_dir = get_datafile("tree")
res = self.api.import_tree(tree_dir)
self.assertEqual("OK", res["status"])
## f, 2sf, and 3files in each sf
self.assertEqual(9, len(res["path2Id"].keys()))
def setUp(self):
## a grid container with 7 rows and 3 columns, cotaining 10 subsamples.
path = base_test.get_datafile("container_by_id.json")
with open(path, "r") as container:
container_json = json.load(container)
self.container = GridContainer(container_json)