def testAppendConflictingEntities(oneImageBidsI):
differentBidsInc = BidsIncremental(oneImageBidsI.image,
oneImageBidsI.getImageMetadata())
differentBidsInc.setMetadataField("subject", "new-subject")
run = BidsRun()
run.appendIncremental(oneImageBidsI)
with pytest.raises(MetadataMismatchError):
run.appendIncremental(differentBidsInc)
def testAppendConflictingMetadata(oneImageBidsI):
bidsInc2 = BidsIncremental(oneImageBidsI.image,
oneImageBidsI.getImageMetadata())
bidsInc2.setMetadataField('subject', 'definitely_invalid_name')
run = BidsRun()
run.appendIncremental(oneImageBidsI)
with pytest.raises(MetadataMismatchError):
run.appendIncremental(bidsInc2)
# Append should work now with validateAppend turned off
numIncrementalsBefore = run.numIncrementals()
run.appendIncremental(bidsInc2, validateAppend=False)
assert run.numIncrementals() == (numIncrementalsBefore + 1)
def incrementAcquisitionValues(incremental: BidsIncremental) -> None:
"""
Increment the acquisition values in an image metadata dictionary to prepare
for append an incremental to an archive built with the same source image.
"""
trTime = incremental.getMetadataField("RepetitionTime")
trTime = 1.0 if trTime is None else float(trTime)
fieldToIncrement = {'AcquisitionTime': trTime, 'AcquisitionNumber': 1.0}
for field, increment in fieldToIncrement.items():
previousValue = incremental.getMetadataField(field)
if previousValue is None:
continue
else:
previousValue = float(previousValue)
incremental.setMetadataField(field, previousValue + increment)