def main():
log_format = "%(asctime)s %(message)s"
log_datefmt = "%m/%d/%Y %I:%M:%S %p"
parser = argparse.ArgumentParser()
parser.add_argument("input_file", help=".ipynb file to run")
parser.add_argument("output_file", nargs="?", help=".ipynb file to save cell output to")
parser.add_argument("--quiet", "-q", action="store_true", help="don't print anything unless things go wrong")
parser.add_argument(
"--overwrite", "-o", action="store_true", help="write notebook output back to original notebook"
)
parser.add_argument("--html", nargs="?", default=False, help="output an HTML snapshot of the notebook")
parser.add_argument("--pylab", action="store_true", help="start notebook with pylab enabled")
parser.add_argument(
"--skip-exceptions",
"-s",
action="store_true",
help="if an exception occurs in a cell, continue running the subsequent cells",
)
args = parser.parse_args()
if args.overwrite:
if args.output_file is not None:
print("Error: output_filename must not be provided if " "--overwrite (-o) given", file=stderr)
exit(1)
else:
args.output_file = args.input_file
if not args.quiet:
logging.basicConfig(level=logging.DEBUG, format=log_format, datefmt=log_datefmt)
nb_runner = NotebookRunner(args.input_file, args.pylab)
exit_status = 0
try:
nb_runner.run_notebook(skip_exceptions=args.skip_exceptions)
except NotebookError:
exit_status = 1
if args.output_file:
nb_runner.save_notebook(args.output_file)
if args.html is not False:
if args.html is None:
# if --html is given but no filename is provided,
# come up with a sane output name based on the
# input filename
if args.input_file.endswith(".ipynb"):
args.html = args.input_file[:-6] + ".html"
else:
args.html = args.input_file + ".ipynb"
logging.info("Saving HTML snapshot to %s" % args.html)
exporter = HTMLExporter()
output, resources = exporter.from_notebook_node(nb_runner.nb)
codecs.open(args.html, "w", encoding="utf-8").write(output)
if exit_status != 0:
logging.warning("Exiting with nonzero exit status")
exit(exit_status)
def evaluate_notebook(nb_path, dest_path=None):
# Create evaluated version and save it to the dest path.
nb_runner = NotebookRunner(nb_in=nb_path)
nb_runner.run_notebook()
if dest_path is None:
dest_path = 'temp_evaluated.ipynb'
nb_runner.save_notebook(dest_path)
ret = nb_to_html(dest_path)
if dest_path is 'temp_evaluated.ipynb':
os.remove(dest_path)
return ret
def evaluate_notebook(nb_path, dest_path=None):
# Create evaluated version and save it to the dest path.
nb_runner = NotebookRunner(nb_in=nb_path)
nb_runner.run_notebook()
if dest_path is None:
dest_path = 'temp_evaluated.ipynb'
nb_runner.save_notebook(dest_path)
ret = nb_to_html(dest_path)
if dest_path is 'temp_evaluated.ipynb':
os.remove(dest_path)
return ret
def evaluate_notebook(nb_path, dest_path=None, skip_exceptions=False):
# Create evaluated version and save it to the dest path.
# Always use --pylab so figures appear inline
# perhaps this is questionable?
nb_runner = NotebookRunner(nb_path, pylab=True)
nb_runner.run_notebook(skip_exceptions=skip_exceptions)
if dest_path is None:
dest_path = 'temp_evaluated.ipynb'
nb_runner.save_notebook(dest_path)
ret = nb_to_html(dest_path)
if dest_path is 'temp_evaluated.ipynb':
os.remove(dest_path)
return ret
def evaluate_notebook(nb_path, dest_path=None, skip_exceptions=False):
# Create evaluated version and save it to the dest path.
# Always use --pylab so figures appear inline
# perhaps this is questionable?
nb_runner = NotebookRunner(nb_in=nb_path, pylab=True)
nb_runner.run_notebook(skip_exceptions=skip_exceptions)
if dest_path is None:
dest_path = 'temp_evaluated.ipynb'
nb_runner.save_notebook(dest_path)
ret = nb_to_html(dest_path)
if dest_path is 'temp_evaluated.ipynb':
os.remove(dest_path)
return ret
def run(self):
# Now convert the lecture notes, problem sets, and practice problems to
# HTML notebooks.
from runipy.notebook_runner import NotebookRunner
start_dir = os.path.abspath('.')
for notebook in (glob.glob('notebooks/*.ipynb')):
os.chdir(os.path.dirname(notebook))
r = NotebookRunner(os.path.basename(notebook), pylab=True)
r.run_notebook(skip_exceptions=True)
r.save_notebook(os.path.basename(notebook))
os.chdir(start_dir)
def run(self):
# Now convert the lecture notes, problem sets, and practice problems to
# HTML notebooks.
from runipy.notebook_runner import NotebookRunner
start_dir = os.path.abspath('.')
for notebook in glob.glob('*.ipynb'):
if os.path.dirname(notebook):
os.chdir(os.path.dirname(notebook))
r = NotebookRunner("./" + os.path.basename(notebook))
r.run_notebook(skip_exceptions=True)
r.save_notebook("./" + os.path.basename(notebook))
os.chdir(start_dir)
def run(self):
""" Run the tutorial notebooks so the line numbers make sense. """
from runipy.notebook_runner import NotebookRunner
current_directory = os.getcwd()
# walk through each directory in tutorials/ to find all .ipynb file
notebook_files = []
for root, dirs, files in os.walk(current_directory):
for filename in files:
base,ext = os.path.splitext(filename)
if ext.lower() == ".ipynb" and "checkpoint" not in base:
os.chdir(root)
r = NotebookRunner(filename, pylab=True)
r.run_notebook(skip_exceptions=True)
r.save_notebook(filename)
def run(self):
# Now convert the lecture notes, problem sets, and practice problems to
# HTML notebooks.
from runipy.notebook_runner import NotebookRunner
start_dir = os.path.abspath('.')
for notebook in (glob.glob('lectures/*.ipynb')
+ glob.glob('problems/*.ipynb')
+ glob.glob('practice/*.ipynb')):
if "Understanding" in notebook:
continue
os.chdir(os.path.dirname(notebook))
r = NotebookRunner(os.path.basename(notebook), pylab=True)
r.run_notebook(skip_exceptions=True)
r.save_notebook(os.path.basename(notebook))
os.chdir(start_dir)
def go(source_dir):
print os.listdir(source_dir)
if not os.path.exists(source_dir):
raise ValueError('source_dir doesnt exist')
print '----- starting NB Evaluation and Conversion'
logging.basicConfig(level=logging.DEBUG,
format=log_format,
datefmt=log_datefmt)
nb_files = recursive_find_by_filter(source_dir, '*.ipynb')
print 'source dir is %s' % source_dir
for nb_file in nb_files:
print nb_file
basename = os.path.basename(nb_file)
notebook_name = basename[:basename.rfind('.')]
build_directory = os.path.dirname(nb_file)
r = NotebookRunner(nb_file, pylab=True)
r.run_notebook()
r.save_notebook(nb_file)
exporter = RSTExporter()
writer = FilesWriter()
resources = {}
resources['output_files_dir'] = '%s_files' % notebook_name
output, resources = exporter.from_notebook_node(r.nb,
resources=resources)
writer.build_directory = build_directory
writer.write(output, resources, notebook_name=notebook_name)
rst_file = nb_file[:nb_file.rfind('.')] + '.' + exporter.file_extension
# this could be improved to only change the double quotes from
# cross references (ie :.*:``.*`` -> :.*:`.*`)
find_replace(rst_file, r'``', '`')
def go(source_dir):
print(os.listdir(source_dir))
if not os.path.exists(source_dir):
raise ValueError ('source_dir doesnt exist')
print('----- starting NB Evaluation and Conversion')
logging.basicConfig(level=logging.DEBUG, format=log_format, datefmt=log_datefmt)
nb_files = recursive_find_by_filter(source_dir, '*.ipynb')
print('source dir is %s'%source_dir)
for nb_file in nb_files:
print(nb_file)
basename = os.path.basename(nb_file)
notebook_name = basename[:basename.rfind('.')]
build_directory = os.path.dirname(nb_file)
r = NotebookRunner(nb_file, pylab=True)
r.run_notebook()
r.save_notebook(nb_file)
exporter = RSTExporter()
writer = FilesWriter()
resources={}
resources['output_files_dir'] = '%s_files' % notebook_name
output, resources = exporter.from_notebook_node(r.nb,
resources = resources)
writer.build_directory = build_directory
writer.write(output, resources, notebook_name=notebook_name)
rst_file = nb_file[:nb_file.rfind('.')]+'.'+exporter.file_extension
# this could be improved to only change the double quotes from
# cross references (ie :.*:``.*`` -> :.*:`.*`)
find_replace(rst_file,r'``','`')
def main():
log_format = '%(asctime)s %(message)s'
log_datefmt = '%m/%d/%Y %I:%M:%S %p'
parser = argparse.ArgumentParser()
parser.add_argument('input_file',
help='.ipynb file to run')
parser.add_argument('output_file', nargs='?',
help='.ipynb file to save cell output to')
parser.add_argument('--quiet', '-q', action='store_true',
help='don\'t print anything unless things go wrong')
parser.add_argument('--overwrite', '-o', action='store_true',
help='write notebook output back to original notebook')
parser.add_argument('--html', nargs='?', default=False,
help='output an HTML snapshot of the notebook')
parser.add_argument('--template', nargs='?', default=False,
help='template to use for HTML output')
parser.add_argument('--pylab', action='store_true',
help='start notebook with pylab enabled')
parser.add_argument('--matplotlib', action='store_true',
help='start notebook with matplotlib inlined')
parser.add_argument('--skip-exceptions', '-s', action='store_true',
help='if an exception occurs in a cell, continue running the subsequent cells')
args = parser.parse_args()
if args.overwrite:
if args.output_file is not None:
print('Error: output_filename must not be provided if '
'--overwrite (-o) given', file=stderr)
exit(1)
else:
args.output_file = args.input_file
if not args.quiet:
logging.basicConfig(level=logging.DEBUG, format=log_format, datefmt=log_datefmt)
nb_runner = NotebookRunner(args.input_file, args.pylab, args.matplotlib)
exit_status = 0
try:
nb_runner.run_notebook(skip_exceptions=args.skip_exceptions)
except NotebookError:
exit_status = 1
if args.output_file:
nb_runner.save_notebook(args.output_file)
if args.html is not False:
if args.html is None:
# if --html is given but no filename is provided,
# come up with a sane output name based on the
# input filename
if args.input_file.endswith('.ipynb'):
args.html = args.input_file[:-6] + '.html'
else:
args.html = args.input_file + '.ipynb'
if args.template is False:
exporter = HTMLExporter()
else:
exporter = HTMLExporter(config=Config({'HTMLExporter':{'default_template':args.template}}))
logging.info('Saving HTML snapshot to %s' % args.html)
output, resources = exporter.from_notebook_node(nb_runner.nb)
codecs.open(args.html, 'w', encoding='utf-8').write(output)
if exit_status != 0:
logging.warning('Exiting with nonzero exit status')
exit(exit_status)
def main():
# TODO: options:
# - output:
# - save HTML report (nbconvert)
print 'ko'
log_format = '%(asctime)s %(message)s'
log_datefmt = '%m/%d/%Y %I:%M:%S %p'
parser = argparse.ArgumentParser()
parser.add_argument('input_file',
help='.ipynb file to run')
parser.add_argument('output_file', nargs='?',
help='.ipynb file to save cell output to')
parser.add_argument('--quiet', '-q', action='store_true',
help='don\'t print anything unless things go wrong')
parser.add_argument('--overwrite', '-o', action='store_true',
help='write notebook output back to original notebook')
parser.add_argument('--html', nargs='?', default=False,
help='output an HTML snapshot of the notebook')
parser.add_argument('--pylab', action='store_true',
help='start notebook with pylab enabled')
args = parser.parse_args()
if args.overwrite:
if args.output_file is not None:
print >> stderr, 'Error: output_filename must not be provided if '\
'--overwrite (-o) given'
exit(1)
else:
args.output_file = args.input_file
if not args.quiet:
logging.basicConfig(level=logging.DEBUG, format=log_format, datefmt=log_datefmt)
nb_runner = NotebookRunner(args.input_file, args.pylab)
exit_status = 0
try:
nb_runner.run_notebook()
except NotebookError:
exit_status = 1
if args.output_file:
nb_runner.save_notebook(args.output_file)
if args.html is not False:
if args.html is None:
# if --html is given but no filename is provided,
# come up with a sane output name based on the
# input filename
if args.input_file.endswith('.ipynb'):
args.html = args.input_file[:-6] + '.html'
else:
args.html = args.input_file + '.ipynb'
logging.info('Saving HTML snapshot to %s' % args.html)
exporter = HTMLExporter()
output, resources = exporter.from_notebook_node(nb_runner.nb)
codecs.open(args.html, 'w', encoding='utf-8').write(output)
if exit_status != 0:
logging.warning('Exiting with nonzero exit status')
exit(exit_status)
def main():
log_format = '%(asctime)s %(message)s'
log_datefmt = '%m/%d/%Y %I:%M:%S %p'
parser = argparse.ArgumentParser()
parser.add_argument('input_file', help='.ipynb file to run')
parser.add_argument('output_file',
nargs='?',
help='.ipynb file to save cell output to')
parser.add_argument('--quiet',
'-q',
action='store_true',
help='don\'t print anything unless things go wrong')
parser.add_argument('--overwrite',
'-o',
action='store_true',
help='write notebook output back to original notebook')
parser.add_argument('--html',
nargs='?',
default=False,
help='output an HTML snapshot of the notebook')
parser.add_argument('--template',
nargs='?',
default=False,
help='template to use for HTML output')
parser.add_argument('--pylab',
action='store_true',
help='start notebook with pylab enabled')
parser.add_argument('--matplotlib',
action='store_true',
help='start notebook with matplotlib inlined')
parser.add_argument(
'--skip-exceptions',
'-s',
action='store_true',
help=
'if an exception occurs in a cell, continue running the subsequent cells'
)
args = parser.parse_args()
if args.overwrite:
if args.output_file is not None:
print(
'Error: output_filename must not be provided if '
'--overwrite (-o) given',
file=stderr)
exit(1)
else:
args.output_file = args.input_file
if not args.quiet:
logging.basicConfig(level=logging.DEBUG,
format=log_format,
datefmt=log_datefmt)
nb_runner = NotebookRunner(args.input_file, args.pylab, args.matplotlib)
exit_status = 0
try:
nb_runner.run_notebook(skip_exceptions=args.skip_exceptions)
except NotebookError:
exit_status = 1
if args.output_file:
nb_runner.save_notebook(args.output_file)
if args.html is not False:
if args.html is None:
# if --html is given but no filename is provided,
# come up with a sane output name based on the
# input filename
if args.input_file.endswith('.ipynb'):
args.html = args.input_file[:-6] + '.html'
else:
args.html = args.input_file + '.ipynb'
if args.template is False:
exporter = HTMLExporter()
else:
exporter = HTMLExporter(config=Config(
{'HTMLExporter': {
'default_template': args.template
}}))
logging.info('Saving HTML snapshot to %s' % args.html)
output, resources = exporter.from_notebook_node(nb_runner.nb)
codecs.open(args.html, 'w', encoding='utf-8').write(output)
if exit_status != 0:
logging.warning('Exiting with nonzero exit status')
exit(exit_status)
